Biochemistry & Molecular Biology

  • United States

Organization profile

Organization profile

Research Interests

Fingerprint Dive into the research topics where Biochemistry & Molecular Biology is active. These topic labels come from the works of this organization's members. Together they form a unique fingerprint.

Genes Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genome Medicine & Life Sciences
DNA Medicine & Life Sciences
RNA Medicine & Life Sciences
Photosystem I Protein Complex Medicine & Life Sciences
Enzymes Medicine & Life Sciences
Escherichia coli Medicine & Life Sciences

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Profiles

No photo of Sarah Ellen Ades

Sarah Ellen Ades

Person: Academic

19902019
No photo of Benjamin D. Allen

Benjamin D. Allen

Person: Academic

20032019
No photo of John Alumasa

John Alumasa

Person: Academic

20082019
No photo of Jamie Jon Arnold

Jamie Jon Arnold

Person: Academic

19962018
No photo of Paul Lee Babitzke
19892022
No photo of Lu Bai

Lu Bai

Person: Academic

20042021
No photo of Carol Sue Baker

Carol Sue Baker

Person: Academic

19942018
No photo of Emily Bell

Emily Bell

Person: Academic

20122019
No photo of Igor Berezin

Igor Berezin

Person: Academic

20062018

Research Output 1961 2019

Adaptive Shape Ripening and Interparticle Bridging of L-Arginine-Stabilized Silica Nanoparticles during Evaporative Colloidal Crystal Assembly

Russell, J. L., Tran, N. L. L. & Mallouk, T. E., Jan 30 2019, In : ACS Applied Materials and Interfaces. 11, 4, p. 4568-4577 10 p.

Research output: Contribution to journalArticle

Arginine
Silicon Dioxide
Colloids
Silica
Nanoparticles

A machine-learning approach for accurate detection of copy number variants from exome sequencing

Pounraja, V. K., Jayakar, G., Jensen, M., Kelkar, N. & Girirajan, S., Jan 1 2019, In : Genome research. 29, 7, p. 1134-1143 10 p.

Research output: Contribution to journalArticle

Open Access
Exome
Inborn Genetic Diseases
Base Composition
Machine Learning

Analysis of RNA Methylation by Phylogenetically Diverse Cfr Radical S-Adenosylmethionine Enzymes Reveals an Iron-Binding Accessory Domain in a Clostridial Enzyme

Gumkowski, J. D., Martinie, R. J., Corrigan, P. S., Pan, J., Bauerle, M. R., Almarei, M., Booker, S. J., Silakov, A., Krebs, C. & Boal, A. K., Jun 27 2019, In : Biochemistry. 58, 29, p. 3169-3184 16 p.

Research output: Contribution to journalArticle

Bacteriology
tRNA Methyltransferases
S-Adenosylmethionine
Clostridium
Methylation

Analysis of RNAPII complexes

Reese, J. C., Apr 15 2019, In : Methods. 159-160, p. 1-3 3 p.

Research output: Contribution to journalEditorial

1 Citation (Scopus)

A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases

Rajakovich, L. J., Pandelia, M. E., Mitchell, A. J., Chang, W. C., Zhang, B., Boal, A. K., Krebs, C. & Bollinger, Jr., J. M., Mar 26 2019, In : Biochemistry. 58, 12, p. 1627-1647 21 p.

Research output: Contribution to journalArticle

Organophosphonates
Oxygenases
Iron
Degradation
gamma-Butyrobetaine Dioxygenase
1 Citation (Scopus)

An interaction-based model for neuropsychiatric features of copy-number variants

Jensen, M. & Girirajan, S., Jan 1 2019, In : PLoS genetics. 15, 1, e1007879.

Research output: Contribution to journalArticle

phenotype
Phenotype
gene
Genes
genes
5 Citations (Scopus)

An N-nitrosating metalloenzyme constructs the pharmacophore of streptozotocin

Ng, T. L., Rohac, R., Mitchell, A. J., Boal, A. K. & Balskus, E. P., Feb 7 2019, In : Nature. 566, 7742, p. 94-99 6 p.

Research output: Contribution to journalLetter

Streptozocin
Iron
Synthetic Chemistry Techniques
Guanidine
Enzymes

An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes

Bevilacqua, P. C., Harris, M. E., Piccirilli, J. A., Gaines, C., Ganguly, A., Kostenbader, K., Ekesan, Ş. & York, D. M., Jun 21 2019, In : ACS chemical biology. 14, 6, p. 1068-1076 9 p.

Research output: Contribution to journalReview article

RNA Cleavage
Catalytic RNA
Ontology
RNA
Enzymes

An optimal O(nm) algorithm for enumerating all walks common to all closed edge-covering walks of a graph

Cairo, M., Medvedev, P., Acosta, N. O., Rizzi, R. & Tomescu, A. I., Jul 1 2019, In : ACM Transactions on Algorithms. 15, 4, 48.

Research output: Contribution to journalArticle

Open Access
Walk
Covering
Closed
Graph in graph theory

A review of analytical platforms for accurate bile acid measurement

Dutta, M., Cai, J., Gui, W. & Patterson, A. D., Jul 19 2019, In : Analytical and Bioanalytical Chemistry. 411, 19, p. 4541-4549 9 p.

Research output: Contribution to journalReview article

Bile Acids and Salts
Clinical laboratories
Intestinal Diseases
Molecules
Liquid chromatography

Projects 1980 2023

Implementing the Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Nekrutenko, A., Taylor, J. P., Leek, J. T., Waldron, L. D., Carey, V. J., Morgan, M., Schatz, M. & Goecks, J.

National Institutes of Health

9/21/186/30/23

Project: Research project

Visualization
Application programming interfaces (API)
Space platforms
Costs
Natural sciences computing
Histone Code
Chromatin
Nucleosomes
Enzymes
Cryoelectron Microscopy
quorum sensing
Vibrio fischeri
infection
bioluminescence
squid
Education
Genes
Molecular Biology
Genomics
Computational Biology
Infant, Newborn, Diseases
Infection
Human Herpesvirus 2
Human Herpesvirus 1
Genomics
Iron
Enzymes
Biosynthesis
S-Adenosylmethionine
Glutarates
RNA Folding
Biophysics
Genomics
Catalysis
Catalytic RNA
Human Herpesvirus 1
Genetic Testing
Virulence
Viral Proteins
Virus Diseases
Regulator Genes
Genome
Proteins
Multiprotein Complexes
Distillation
Scaffolds
RNA
Proteins
Imaging techniques
Molecules