Research Output per year
Research Output 1961 2020
- 1 - 50 out of 106 results
- Publication Year, Title (descending)
2020
Oligonucleotide Enrichment of HSV-1 Genomic DNA from Clinical Specimens for Use in High-Throughput Sequencing
Shipley, M. M., Rathbun, M. M. & Szpara, M. L., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 199-217 19 p. (Methods in Molecular Biology; vol. 2060).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Viral DNA
Human Herpesvirus 1
Oligonucleotides
High-Throughput Nucleotide Sequencing
Human Herpesvirus 2
2019
1
Citation
(Scopus)
Bimolecular Fluorescence Complementation (BiFC) in Tissue Culture and in Developing Tissues of Drosophila to Study Protein-Protein Interactions
Matsui, Y. & Lai, Z. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 75-85 11 p. (Methods in Molecular Biology; vol. 1893).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Drosophila
Fluorescence
Proteins
Artifacts
1
Citation
(Scopus)
Biosynthesis of chlorophylls and bacteriochlorophylls in green bacteria
Thweatt, J. L., Canniffe, D. P. & Bryant, D. A., 2019, Advances in Botanical Research. Grimm, B. (ed.). Academic Press Inc., p. 35-89 55 p. (Advances in Botanical Research; vol. 90).Research output: Chapter in Book/Report/Conference proceeding › Chapter
biosynthesis
chlorophyll
bacteria
Acidobacteria
chlorins
CryoEM reconstruction approaches to resolve asymmetric features
Goetschius, D. J., Lee, H. & Hafenstein, S., 2019, Advances in Virus Research. Rey, F. A. (ed.). Academic Press Inc., p. 73-91 19 p. (Advances in Virus Research; vol. 105).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Viruses
Capsid
Life Cycle Stages
Genome
Proteins
Information-Theoretic Inference of an Optimal Dictionary of Protein Supersecondary Structures
Konagurthu, A. S., Subramanian, R., Allison, L., Abramson, D., de la Banda, M. G., Stuckey, P. J. & Lesk, A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 123-131 9 p. (Methods in Molecular Biology; vol. 1958).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Amino Acid Motifs
Data Compression
Protein Folding
Patient Selection
In Vivo Genome-Wide RNA Structure Probing with Structure-seq
Ritchey, L. E., Su, Z., Assmann, S. M. & Bevilacqua, P. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 305-341 37 p. (Methods in Molecular Biology; vol. 1933).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Genome
RNA
Glyoxal
Transcriptome
Bacteria
2018
15
Citations
(Scopus)
Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug and Play” Domain
Holliday, G. L., Akiva, E., Meng, E. C., Brown, S. D., Calhoun, S., Pieper, U., Sali, A., Booker, S. J. & Babbitt, P. C., Jan 1 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 1-71 71 p. (Methods in Enzymology; vol. 606).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Atlases
Nucleic Acids
Databases
Enzymes
Metabolism
2
Citations
(Scopus)
Biochemical Approaches for Understanding Iron–Sulfur Cluster Regeneration in Escherichia coli Lipoyl Synthase During Catalysis
McCarthy, E. L. & Booker, S. J., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 217-239 23 p. (Methods in Enzymology; vol. 606).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Catalysis
Escherichia coli
Regeneration
S-Adenosylmethionine
Sulfur
Chemical Tools for Studying the Impact of cis/trans Prolyl Isomerization on Signaling: A Case Study on RNA Polymerase II Phosphatase Activity and Specificity
Burkholder, N. T., Medellin, B., Irani, S., Matthews, W., Showalter, S. A. & Zhang, Y. J., Jan 1 2018, Methods in Enzymology. Allen, K. N. (ed.). Academic Press Inc., p. 269-297 29 p. (Methods in Enzymology; vol. 607).Research output: Chapter in Book/Report/Conference proceeding › Chapter
RNA Polymerase II
Isomerization
Phosphoric Monoester Hydrolases
Proline
Conformations
Predicting Off-Target Effects of Therapeutic Antiviral Ribonucleosides: Inhibition of Mitochondrial RNA Transcription
Arnold, J. J. & Cameron, C. E., Feb 21 2018, Mitochondrial Dysfunction Caused by Drugs and Environmental Toxicants. wiley, Vol. 1-2. p. 407-417 11 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Ribonucleosides
Therapeutic Uses
Transcription
Antiviral Agents
Viruses
2
Citations
(Scopus)
The biochemistry and physiology of respiratory-driven reversed methanogenesis
Nazem-Bokaee, H., Yan, Z., Maranas, C. D. & Ferry, J. G., Jun 20 2018, Methane Biocatalysis: Paving the Way to Sustainability. Springer International Publishing, p. 183-197 15 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Respiratory Physiological Phenomena
Biochemistry
Physiology
The Use of 13C Direct-Detect NMR to Characterize Flexible and Disordered Proteins
Cook, E. C., Usher, G. A. & Showalter, S. A., Jan 1 2018, Methods in Enzymology. Rhoades, E. (ed.). Academic Press Inc., p. 81-100 20 p. (Methods in Enzymology; vol. 611).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Intrinsically Disordered Proteins
Nuclear magnetic resonance
Nuclear magnetic resonance spectroscopy
Magnetic Resonance Spectroscopy
Proteins
2
Citations
(Scopus)
Using Peptide Mimics to Study the Biosynthesis of the Side-Ring System of Nosiheptide
Wang, B., LaMattina, J. W., Badding, E. D., Gadsby, L. K., Grove, T. L. & Booker, S. J., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 241-268 28 p. (Methods in Enzymology; vol. 606).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Biosynthesis
S-Adenosylmethionine
Peptides
Pharmacokinetics
Antimalarials
2017
Anaerobic metabolism of aromatic compounds
Haddock, J. D. & Ferry, J. G., Jan 1 2017, Bioprocessing and Biotreatment of Coal. CRC Press, p. 393-416 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
metabolism
degradation
carbon
amino acid
microorganism
22
Citations
(Scopus)
A panoply of phototrophs: An Overview of the thermophilic chlorophototrophs of the microbial mats of Alkaline siliceous hot springs in Yellowstone National Park, WY, USA
Tank, M., Thiel, V., Ward, D. M. & Bryant, D. A., Apr 18 2017, Modern Topics in the Phototrophic Prokaryotes: Environmental and Applied Aspects. Springer International Publishing, p. 87-137 51 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Hot Springs
hot springs
microbial mat
autotrophs
Chlorophyll
Biopiracy
Satheeshkumar, P. K. & Narayanan, A., May 10 2017, Status and Strategies for Exploration. Springer Singapore, Vol. 1. p. 185-204 20 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Intellectual Property
Internationality
Intellectual property
Inventors
Nimodipine
DNA analysis
Weedn, V. W., Lee, D. A., Roby, R. K. & Holland, M. M., Jan 1 2017, Handbook of Analytical Therapeutic Drug Monitoring and Toxicology. CRC Press, p. 35-49 15 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
DNA
Textbooks
6
Citations
(Scopus)
Mechanism and Role of Globin-Coupled Sensor Signalling
Walker, J. A., Rivera, S. & Weinert, E. E., Jan 1 2017, Advances in Microbial Physiology. Academic Press, p. 133-169 37 p. (Advances in Microbial Physiology; vol. 71).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Globins
Oxygen
Proteins
Heme
Protein Kinases
1
Citation
(Scopus)
Mechanism-Based Strategies for Structural Characterization of Radical SAM Reaction Intermediates
Davis, K. M. & Boal, A. K., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 331-359 29 p. (Methods in Enzymology; vol. 595).Research output: Chapter in Book/Report/Conference proceeding › Chapter
S-Adenosylmethionine
Reaction intermediates
Enzymes
Substrate Specificity
Crystal structure
6
Citations
(Scopus)
Molecular biology of lignin peroxidases from Phanerochaete chrysosporium
Holzbaur, E. L. F., Andrawis, A. & Tien, M., Jan 1 2017, Molecular Industrial Mycology: Systems and Applications for Filamentous Fungi. CRC Press, p. 197-223 27 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
lignin peroxidase
Phanerochaete
Phanerochaete chrysosporium
Lignin
biodegradation
The role of iron-sulfur clusters in the biosynthesis of the lipoyl cofactor
Lanz, N. D. & Booker, S. J., Aug 21 2017, Characterization, Properties and Applications. Walter de Gruyter GmbH, Vol. 1. p. 327-358 32 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Biosynthesis
Sulfur
Iron
7
Citations
(Scopus)
TsrM as a Model for Purifying and Characterizing Cobalamin-Dependent Radical S-Adenosylmethionine Methylases
Blaszczyk, A. J., Wang, R. X. & Booker, S. J., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 303-329 27 p. (Methods in Enzymology; vol. 595).Research output: Chapter in Book/Report/Conference proceeding › Chapter
S-Adenosylmethionine
Vitamin B 12
Enzymes
Proteins
Biosynthesis
2016
2
Citations
(Scopus)
A High-Throughput Biological Calorimetry Core: Steps to Startup, Run, and Maintain a Multiuser Facility
Yennawar, N., Fecko, J. A., Showalter, S. A. & Bevilacqua, P. C., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 435-460 26 p. (Methods in Enzymology; vol. 567).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Calorimetry
Throughput
Chemical Engineering
Ligands
Bioengineering
4
Citations
(Scopus)
Assessing Coupled Protein Folding and Binding Through Temperature-Dependent Isothermal Titration Calorimetry
Sahu, D., Bastidas, M., Lawrence, C. W., Noid, W. G. & Showalter, S. A., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 23-45 23 p. (Methods in Enzymology; vol. 567).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Protein folding
Calorimetry
Protein Folding
Titration
Protein Binding
Expression and purification of mitochondrial RNA polymerase and transcription factor a from drosophila melanogaster
Gajewski, J. P., Arnold, J. J., Salminen, T. S., Kaguni, L. S. & Cameron, C. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 199-210 12 p. (Methods in Molecular Biology; vol. 1351).Research output: Chapter in Book/Report/Conference proceeding › Chapter
DNA-Directed RNA Polymerases
Drosophila melanogaster
Transcription Factors
Mitochondrial Genes
Small Ubiquitin-Related Modifier Proteins
1
Citation
(Scopus)
Induction and purification of c. Difficile phage tail-like particles
Hegarty, J. P., Sangster, W., Ashley, R. E., Myers, R., Hafenstein, S. & Stewart, D. B., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 167-175 9 p. (Methods in Molecular Biology; vol. 1476).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Bacteriophages
Bacteriocins
Viral Genome
Capsid
Infection
Microbial cellulose synthesis
Nagachar, N. & McManus, J., Jan 1 2016, Microbial Factories: Biofuels, Waste treatment: Volume 1. Springer India, p. 203-216 14 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Cellulose
cellulose
synthesis
feedstocks
Carbon
3
Citations
(Scopus)
Polymerase mechanism-based method of viral attenuation
Lee, C. A., August, A., Arnold, J. J. & Cameron, C. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 83-104 22 p. (Methods in Molecular Biology; vol. 1349).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Vaccines
Viruses
Lysine
RNA Viruses
Mutation
4
Citations
(Scopus)
Preparation, Crystallization, and Structure Determination of Chromatin Enzyme/Nucleosome Complexes
McGinty, R. K., Makde, R. D. & Tan, S., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 43-65 23 p. (Methods in Enzymology; vol. 573).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Nucleosomes
Crystallization
Chromatin
Enzymes
Cryoelectron Microscopy
2015
1
Citation
(Scopus)
Carbonic Anhydrases of Environmentally and Medically Relevant Anaerobic Prokaryotes
Ferry, J. G., Jan 8 2015, Carbonic Anhydrases as Biocatalysts: From Theory to Medical and Industrial Applications. Elsevier Inc., p. 325-336 12 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Carbonic anhydrase
Carbonic Anhydrases
Carbon Dioxide
Carbon dioxide
Mammals
32
Citations
(Scopus)
Mechanisms of 2-oxoglutarate-dependent oxygenases: The hydroxylation paradigm and beyond
Bollinger, Jr., J. M., Chang, W. C., Matthews, M. L., Martinie, R. J., Boal, A. K. & Krebs, C., Jan 1 2015, 2-Oxoglutarate-Dependent Oxygenases. Hausinger, R. P. & Schofield, C. J. (eds.). 3 ed. Royal Society of Chemistry, p. 95-122 28 p. (RSC Metallobiology; vol. 2015-January, no. 3).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Oxygenases
Hydroxylation
Dehydrogenation
Halogenation
Alkenes
Reconstitution of factor-dependent, promoter proximal pausing in Drosophila nuclear extracts
Li, J. & Gilmour, D. S., Feb 9 2015, Bacterial Transcriptional Control: Methods and Protocols. Springer New York, p. 133-152 20 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Drosophila
RNA
RNA Polymerase II
Transcription
Oligonucleotides
1
Citation
(Scopus)
Re-routing redox chains for directed photocatalysis
Lubner, C. E., Applegate, A. M. & Golbeck, J. H., Jan 1 2015, Biohydrogen. Walter de Gruyter GmbH, p. 239-264 26 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Photocatalysis
Oxidation-Reduction
Selenium and Cancer Metastasis
Chen, Y. C. & Mastro, A. M., 2015, Betaine: Chemistry, Analysis, Function and Effects. 9 ed. Royal Society of Chemistry, Vol. 2015-January. p. 408-427 20 p. (Food and Nutritional Components in Focus; vol. 2015-January, no. 9).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Selenium
metastasis
selenium
Neoplasm Metastasis
neoplasms
Techniques Analyzing Chromatin Modifications at Specific Single Loci
Chen, X. A., Sun, J. & Wang, Y., Jun 17 2015, Epigenetic Technological Applications. Elsevier Inc., p. 79-100 22 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Histone Code
Chromatin
Histones
DNA
Lysine
2014
1
Citation
(Scopus)
Applying UV crosslinking to study RNA-protein interactions in multicomponent ribonucleoprotein complexes
Krasilnikov, A. S., 2014, RNA Folding: Methods and Protocols. Humana Press Inc., p. 193-207 15 p. (Methods in Molecular Biology; vol. 1086).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Ribonucleoproteins
RNA
His-His-His-His-His-His
Ribonuclease P
Proteins
2
Citations
(Scopus)
Bosnia and Herzegovina: Forensic Archaeology in Support of National and International Organisations Undertaking Criminal Investigations and Identifying the Missing from 1996 to 2013
Hanson, I., Rizviç, A. & Parsons, T. J., Jan 1 2014, Forensic Archaeology: A Global Perspective. Wiley-Blackwell, p. 19-31 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Bosnia and Herzegovina
archaeology
war crime
Yugoslavia
prosecution
26
Citations
(Scopus)
Experimental approaches for measuring pKa's in RNA and DNA
Thaplyal, P. & Bevilacqua, P. C., 2014, Methods in Enzymology. C ed. Academic Press Inc., p. 189-219 31 p. (Methods in Enzymology; vol. 549, no. C).Research output: Chapter in Book/Report/Conference proceeding › Chapter
RNA
DNA
Nucleic Acids
Hydroxides
RNA Folding
5
Citations
(Scopus)
Finding the epistasis needles in the genome-wide haystack
Ritchie, M. D., Nov 17 2014, Epistasis: Methods and Protocols. Springer New York, p. 19-33 15 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Genome-Wide Association Study
Needles
Genes
Genome
Single Nucleotide Polymorphism
3
Citations
(Scopus)
Histone, nucleosome, and chromatin structure
McGinty, R. K. & Tan, S., May 1 2014, Fundamentals of Chromatin. Springer New York, p. 1-28 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Nucleosomes
Histones
Chromatin
DNA
Cell Nucleus
Metabolomics
Belton, B. R., Correll, J. B. & Patterson, A. D., Jan 1 2014, Applications of High-Resolution Mass Spectrometry in Drug Discovery and Development. Future Medicine Ltd., p. 106-118 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Tissue Extracts
Plasmas
Molecules
Metabolomics
10
Citations
(Scopus)
Prioritized Sampling of Bone and Teeth for DNA Analysis in Commingled Cases
Hines, D. Z. C., Vennemeyer, M., Amory, S., Huel, R. L. M., Hanson, I., Katzmarzyk, C. & Parsons, T. J., Jun 17 2014, Commingled Human Remains: Methods in Recovery, Analysis, and Identification. Elsevier Inc., p. 275-305 31 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
genetic test
human being
Yugoslavia
experience
costs
Reducing Dimensionality in the Search for Gene-Gene Interactions
Ritchie, M. D., Jan 1 2014, Between the Lines of Genetic Code: Genetic Interactions in Understanding Disease and Complex Phenotypes. Elsevier Inc., p. 25-37 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Genes
Data Mining
Explosions
Sample Size
Data mining
5
Citations
(Scopus)
The role of iron-sulfur clusters in the biosynthesis of the lipoyl cofactor
Lanz, N. D. & Booker, S. J., Jan 1 2014, Iron-Sulfur Clusters in Chemistry and Biology. Walter de Gruyter GmbH, p. 211-238 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Biosynthesis
Sulfur
Iron
1
Citation
(Scopus)
Using the split-ubiquitin yeast two-hybrid system to test protein-protein interactions of transmembrane proteins
Bashline, L. & Gu, Y., Nov 18 2014, Plant Cell Expansion: Methods and Protocols. Springer New York, p. 143-158 16 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
two hybrid system techniques
Two-Hybrid System Techniques
transmembrane proteins
protein-protein interactions
ubiquitin
2013
6
Citations
(Scopus)
Analytical Methodology of POPs
Reiner, E. J., Jobst, K. J., Megson, D., Dorman, F. L. & Focant, J. F., Dec 1 2013, Environmental Forensics for Persistent Organic Pollutants. Elsevier B.V., p. 59-139 81 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Organic pollutants
Flame Retardants
Environmental Pollutants
Poisons
Flame retardants
12
Citations
(Scopus)
An integrated picture of HDV ribozyme catalysis
Golden, B. L., Hammes-Schiffer, S., Carey, P. R. & Bevilacqua, P. C., Jan 1 2013, Biophysics of RNA Folding. Springer New York, p. 135-167 33 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Hepatitis Delta Virus
Catalytic RNA
Catalysis
Viruses
Crystallography
Biomonitoring for POPs
Patterson, D. G., Aylward, L. L., Covaci, A. & Franzblau, A., Dec 1 2013, Environmental Forensics for Persistent Organic Pollutants. Elsevier B.V., p. 163-197 35 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Beef
Metabolism
Dust
Clay
Contamination
1
Citation
(Scopus)
Electron paramagnetic resonance spectroscopy
Golbeck, J. H. & van der Est, A., Jan 1 2013, Molecular Biophysics for the Life Sciences. Springer New York, p. 175-213 39 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
electron paramagnetic resonance spectroscopy
Electron Spin Resonance Spectroscopy
Paramagnetic resonance
Spectrum Analysis
Spectroscopy
6
Citations
(Scopus)
Extraction of hydrophilic metabolites from plasmodium falciparum -infected erythrocytes for metabolomic analysis
Olszewski, K. L. & Llinás, M., 2013, Malaria: Methods and Protocols. Humana Press Inc., p. 259-266 8 p. (Methods in Molecular Biology; vol. 923).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Metabolomics
Plasmodium falciparum
Parasites
Erythrocytes
Metabolic Networks and Pathways