Biochemistry & Molecular Biology

  • United States

Research Output 1961 2019

Filter
Conference article
2018
4 Citations (Scopus)

Evaluation of predixcan for prioritizing GWAS associations and predicting gene expression

Li, B., Verma, S. S., Veturi, Y. C., Verma, A., Bradford, Y., Haas, D. W. & Ritchie, M. D., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 448-459 12 p.

Research output: Contribution to journalConference article

Genome-Wide Association Study
Gene expression
Genes
Gene Expression
Quantitative Trait Loci
3 Citations (Scopus)

How powerful are summary-based methods for identifying expression-trait associations under different genetic architectures?

Veturi, Y. & Ritchie, M. D., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 228-239 12 p.

Research output: Contribution to journalConference article

Transcriptome
Genome-Wide Association Study
Genes
Gene Expression
Gene expression
2017
3 Citations (Scopus)

Identifying genetic associations with variability in metabolic health and blood count laboratory values: Diving into the quantitative traits by leveraging longitudinal data from an EHR

Verma, S. S., Lucas, A. M., Lavage, D. R., Leader, J. B., Metpally, R., Krishnamurthy, S., Dewey, F., Borecki, I., Lopez, A., Overton, J., Penn, J., Reid, J., Pendergrass, S. A., Breitwieser, G. & Ritchie, M. D., Jan 1 2017, In : Pacific Symposium on Biocomputing. 0, 212679, p. 533-544 12 p.

Research output: Contribution to journalConference article

Diving
Electronic Health Records
Health
International Classification of Diseases
Single Nucleotide Polymorphism
2016
2 Citations (Scopus)

Biofilter as a functional annotation pipeline for common and rare copy number burden

Kim, D., Lucas, A., Glessner, J., Verma, S. S., Bradford, Y., Li, R., Frase, A. T., Hakonarson, H., Peissig, P., Brilliant, M. & Ritchie, M. D., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. 357-368 12 p.

Research output: Contribution to journalConference article

Biofilters
Pipelines
Genes
Phenotype
Gene Ontology
8 Citations (Scopus)

Integrating clinical laboratory measures and ICD-9 code diagnoses in phenome-wide association studies

Verma, A., Leader, J. B., Verma, S. S., Frase, A., Wallace, J., Dudek, S., Lavage, D. R., Van Hout, C. V., Dewey, F. E., Penn, J., Lopez, A., Overton, J. D., Carey, D. J., Ledbetter, D. H., Kirchner, H. L., Ritchie, M. D. & Pendergrass, S. A., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. 168-179 12 p.

Research output: Contribution to journalConference article

Clinical laboratories
Electronic Health Records
International Classification of Diseases
Health
Genome-Wide Association Study
2 Citations (Scopus)

Phenome-wide interaction study (PheWIS) in aids clinical trials group data (ACTG)

Verma, S. S., Frase, A. T., Verma, A., Pendergrass, S. A., Mahony, S. A., Haas, D. W. & Ritchie, M. D., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. 57-68 12 p.

Research output: Contribution to journalConference article

Genes
Clinical Trials
Phenotype
Nucleotides
Polymorphism
2015
10 Citations (Scopus)

Binning somatic mutations based on biological knowledge for predicting survival: An application in renal cell carcinoma

Kim, D., Li, R., Dudek, S. M., Wallace, J. R. & Ritchie, M. D., Jan 1 2015, In : Pacific Symposium on Biocomputing. p. 96-107 12 p.

Research output: Contribution to journalConference article

Renal Cell Carcinoma
Genes
Cells
Mutation
Survival
2014
20 Citations (Scopus)

Environment-wide association study (EWAS) for type 2 diabetes in the Marshfield Personalized Medicine Research Project Biobank

Hall, M., Dudek, S. M., Goodloe, R., Crawford, D. C., Pendergrass, S. A., Peissig, P., Brilliant, M., McCarty, C. A. & Ritchie, M. D., Jan 1 2014, In : Pacific Symposium on Biocomputing. p. 200-211 12 p.

Research output: Contribution to journalConference article

Precision Medicine
Nutrition
Medical problems
Type 2 Diabetes Mellitus
Nutrition Surveys
1 Citation (Scopus)
Bioinformatics
Genomics
Computational Biology
Autistic Disorder
Communication
2013
16 Citations (Scopus)

ATHENA: A tool for meta-dimensional analysis applied to genotypes and gene expression data to predict HDL cholesterol levels

Holzinger, E. R., Dudek, S. M., Frase, A. T., Krauss, R. M., Medina, M. W. & Ritchie, M. D., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 385-396 12 p.

Research output: Contribution to journalConference article

Genome-Wide Association Study
HDL Cholesterol
Single Nucleotide Polymorphism
Meta-Analysis
Genotype
5 Citations (Scopus)

Characterization of the metabochip in diverse populations from the International HapMap Project in the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) Project

Crawford, D. C., Goodloe, R., Brown-Gentry, K., Wilson, S., Roberson, J., Gillani, N. B., Ritchie, M. D., Dilks, H. H. & Bush, W. S., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 188-199 12 p.

Research output: Contribution to journalConference article

HapMap Project
Genome-Wide Association Study
Genes
Genomics
Quality Control
11 Citations (Scopus)

Enabling high-throughput genotype-phenotype associations in the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) project as part of the Population Architecture using Genomics and Epidemiology (PAGE) study

Bush, W. S., Boston, J., Pendergrass, S. A., Dumitrescu, L., Goodloe, R., Brown-Gentry, K., Wilson, S., McClellan, B., Torstenson, E., Basford, M. A., Spencer, K. L., Ritchie, M. D. & Crawford, D. C., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 373-384 12 p.

Research output: Contribution to journalConference article

Epidemiology
Genetic Association Studies
Genomics
Genes
Throughput
15 Citations (Scopus)

Next-generation analysis of cataracts: Determining knowledge driven gene-gene interactions using biofilter, and gene-environment interactions using the PhenX Toolkit

Pendergrass, S. A., Verma, S. S., Hall, M., Holzinger, E. R., Moore, C. B., Wallace, J. R., Dudek, S. M., Huggins, W., Kitchner, T., Waudby, C., Berg, R., McCarty, C. A. & Ritchie, M. D., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 147-158 12 p.

Research output: Contribution to journalConference article

Gene-Environment Interaction
Cataract
Single Nucleotide Polymorphism
Electronic Health Records
Genes
1 Citation (Scopus)

Statistical inference of protein "LEGO bricks"

Konagurthu, A. S., Allison, L., Abramson, D., Stuckey, P. J. & Lesk, A., Dec 1 2013, In : Proceedings - IEEE International Conference on Data Mining, ICDM. p. 1091-1096 6 p., 6729603.

Research output: Contribution to journalConference article

Glossaries
Brick
Proteins
Protein folding
Biomolecules
14 Citations (Scopus)

Using biobin to explore rare variant population stratification

Moore, C. B., Wallace, J. R., Frase, A. T., Pendergrass, S. A. & Ritchie, M. D., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 332-343 12 p.

Research output: Contribution to journalConference article

Nucleic Acid Regulatory Sequences
Population
Regulator Genes
Protein Binding
Primates
2012

Systems pharmacogenomics-bridging the gap

Ritchie, M. D., Cox, N., Cheng, C., Weiss, S., Klein, T. & Altman, R., Jan 1 2012, In : Pacific Symposium on Biocomputing. 1 p.

Research output: Contribution to journalConference article

Pharmacogenetics
2011

Progress and problems in visible light water splitting

Zhao, Y., Hernandez-Pagan, E. A., Vargas-Barbosa, N. M., Lee, S. H. A., Youngblood, W. J., Smotkin, E. S., Mallouk, T. E., Moore, A. L., Moore, T. A. & Gust, D., Dec 1 2011, In : ACS National Meeting Book of Abstracts.

Research output: Contribution to journalConference article

Water
Protons
Coloring Agents
Dyes
Photoelectrochemical cells
2010

Dye-sensitized semiconductor photoelectrochemical cells for overall water splitting

Lee, S. H. A., Youngblood, W. J., Blasdel, L. K., Mallouk, T. E., Moore, T. A., Moore, A. L. & Gust, D., Dec 1 2010, In : ACS National Meeting Book of Abstracts.

Research output: Contribution to journalConference article

Photoelectrochemical cells
Coloring Agents
Dyes
Semiconductor materials
Water

Optimizing electron and proton transfer in water splitting dye-sensitized solar cells

Lee, S. H. A., Youngblood, W. J., Blasdel, L., Jellison, L., Lentz, D., Moore, T. A., Moore, A. L., Gust, D. & Mallouk, T. E., Dec 1 2010, In : ACS National Meeting Book of Abstracts.

Research output: Contribution to journalConference article

Proton transfer
Quantum yield
Oxides
Electrons
Water
2006

The design and control of catalytic motors: Manipulating colloids and fluids with self-generated forces

Kline, T. R., Iwata, J., Lammert, P. E., Velegol, D., Mallouk, T. E. & Sen, A., Dec 1 2006, In : Materials Research Society Symposium Proceedings. 944, p. 14-21 8 p.

Research output: Contribution to journalConference article

Electroosmosis
Microfabrication
Colloids
Electrophoresis
Silver
2005
6 Citations (Scopus)

Can neural network constraints in GP provide power to detect genes associated with human disease?

Bush, W. S., Motsinger, A. A., Dudek, S. M. & Ritchie, M. D., Sep 19 2005, In : Lecture Notes in Computer Science. 3449, p. 44-53 10 p.

Research output: Contribution to journalConference article

Genes
Neural Networks
Gene
Neural networks
Gene-environment Interaction

Directed sorting method for synthesis of supported metal catalysts for methylcyclohexane dehydrogenation

Ramanathan, R., Chan, B. C., Salvitti, M. A., Mallouk, T. E., Falih, F. M., Galloway, D. B., Bare, S. R. & Willis, R. R., Dec 1 2005, In : ACS National Meeting Book of Abstracts. 230

Research output: Contribution to journalConference article

Dehydrogenation
Sorting
Metals
Catalysts
Aluminum Oxide
17 Citations (Scopus)

Electro-optical and nonlinear optical properties of semiconductor nanorod doped liquid crystals

Williams, Y., Chan, K., Park, J. H., Khoo, I., Lewis, B. & Mallouk, T. E., Dec 1 2005, In : Proceedings of SPIE - The International Society for Optical Engineering. 5936, p. 1-6 6 p., 593613.

Research output: Contribution to journalConference article

Liquid Crystals
Nanorods
doped crystals
Liquid Crystal
Liquid crystals
2004

Basic research needs in hydrogen production for a hydrogen energy economy

Mallouk, T. E. & Mets, L., Mar 1 2004, In : ACS Division of Fuel Chemistry, Preprints. 49, 1

Research output: Contribution to journalConference article

Hydrogen production
Hydrogen
Costs
89 Citations (Scopus)

Dielectrophoretic assembly and integration of nanowire devices with functional CMOS operating circuitry

Evoy, S., DiLello, N., Deshpande, V., Narayanan, A., Liu, H., Riegelman, M., Martin, B. R., Hailer, B., Bradley, J. C., Weiss, W., Mayer, T. S., Gogotsi, Y., Bau, H. H., Mallouk, T. E. & Raman, S., Jul 1 2004, In : Microelectronic Engineering. 75, 1, p. 31-42 12 p.

Research output: Contribution to journalConference article

Nanowires
CMOS
nanowires
assembly
Nanosensors

Increased efficiency of dye sensitized solar cells through the localization of light

Abrams, N. M., Halaoui, L. I. & Mallouk, T. E., Jan 1 2004, In : ACS National Meeting Book of Abstracts. 228, 1

Research output: Contribution to journalConference article

Scattering
Tuning
Multiple scattering
Photonic crystals
Coloring Agents
2 Citations (Scopus)

Nanoassembly of immobilized ligninolytic enzymes for biocatalysis, bioremediation and biosensing

Kuila, D., Tien, M., Lvov, Y., McShane, M., Aithal, R., Singh, S., Potluri, A., Kaul, S., Patel, D. & Krishna, G., Dec 1 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5593, p. 267-276 10 p., 41.

Research output: Contribution to journalConference article

Biosensing
Immobilized Enzymes
Peroxidase
lignin
Bioremediation

Osteoblast adhesion of breast cancer cells with scanned image microscopy

Miyasaka, C., Tittmann, B. R., Mercer, R. R. & Mastro, A. M., Oct 26 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5394, p. 273-279 7 p.

Research output: Contribution to journalConference article

osteoblasts
multiple docking adapters
Osteoblasts
Adhesion
Breast Cancer

Zero-valent metal nanoparticles for soil and groundwater remediation

Hydutsky, B. W., Bishop, E. J., Schrick, B., Blough, J. L. & Mallouk, T. E., Jan 1 2004, In : ACS National Meeting Book of Abstracts. 228, 1

Research output: Contribution to journalConference article

carbopol 940
Metal nanoparticles
Remediation
Groundwater
Iron

Zero-valent metal nanoparticles for soil and groundwater remediation

Hydutsky, B. W., Bishop, E. J., Schrick, B., Blough, J. L. & Mallouk, T. E., Dec 1 2004, In : ACS, Division of Environmental Chemistry - Preprints of Extended Abstracts. 44, 2, p. 163-164 2 p.

Research output: Contribution to journalConference article

Metal nanoparticles
Remediation
Groundwater
Iron
Soils
2003

Using nanoporous carbon membranes in fuel cells

Ramnarayanan, R., Rajagopalan, R., Mallouk, T. E. & Foley, H. C., Jan 1 2003, In : Materials Research Society Symposium - Proceedings. 801, p. 185-190 6 p.

Research output: Contribution to journalConference article

fuel cells
Fuel cells
Carbon
membranes
Membranes
2001
15 Citations (Scopus)

Electrochemical synthesis of multi-material nanowires as building blocks for functional nanostructures

Pena, D. J., Razavi, B., Smith, P. A., Mbindyo, J. K., Natan, M. J., Mayer, T. S., Mallouk, T. E. & Keating, C. D., Jan 1 2001, In : Materials Research Society Symposium - Proceedings. 636

Research output: Contribution to journalConference article

electrochemical synthesis
Nanowires
Nanostructures
nanowires
polycarbonate

Mechanistic and lifetime investigation of zero valent nanoparticles for the remediation of chlorinated hydrocarbons

Schrick, B., Blough, J. L., Jones, A. D. & Mallouk, T. E., Dec 1 2001, In : ACS National Meeting Book of Abstracts. 41, 2, p. 64-66 3 p.

Research output: Contribution to journalConference article

Dehalogenation
Chlorinated Hydrocarbons
Remediation
Nanoparticles
Trichloroethylene

Mechanistic and lifetime investigation of zero valent nanoparticles for the remediation of chlorinated hydrocarbons

Schrick, B., Blough, J. L., Jones, A. D. & Mallouk, T. E., Dec 1 2001, In : ACS Division of Environmental Chemistry, Preprints. 41, 2, p. 64-66 3 p.

Research output: Contribution to journalConference article

Dehalogenation
Chlorinated Hydrocarbons
Trichloroethylene
Nickel
Remediation
2000
50 Citations (Scopus)

Ultrathin nanoparticle ZnS and ZnS: Mn films: Surface sol-gel synthesis, morphology, photophysical properties

Kovtyukhova, N. I., Buzaneva, E. V., Waraksa, C. C. & Mallouk, T. E., Jan 14 2000, In : Materials Science and Engineering B: Solid-State Materials for Advanced Technology. 69, p. 411-417 7 p.

Research output: Contribution to journalConference article

Film growth
Sol-gels
gels
Nanoparticles
Adsorption
1999
15 Citations (Scopus)

Combinatorial screening of anode and cathode electrocatalysts for direct methanol fuel cells

Reddington, E., Yu, J. S., Sapienza, A., Chan, B. C., Gurau, B., Viswanathan, R., Liu, R., Smotkin, E. S., Sarangapani, S. & Mallouk, T. E., Jan 1 1999, In : Materials Research Society Symposium - Proceedings. 549, p. 231-236 6 p.

Research output: Contribution to journalConference article

Direct methanol fuel cells (DMFC)
electrocatalysts
Electrocatalysts
fuel cells
Methanol
8 Citations (Scopus)

Ferragels: A new family of materials for remediation of aqueous metal ion solutions

Ponder, S. M., Ford, J. R., Darab, J. G. & Mallouk, T. E., Dec 1 1999, In : Materials Research Society Symposium - Proceedings. 556, p. 1269-1276 8 p.

Research output: Contribution to journalConference article

Remediation
Metal ions
metal ions
Iron
iron
1997
2 Citations (Scopus)

Assembly of thin film dielectrics by sequential adsorption reactions of unilamellar inorganic colloids

Fang, M., Kim, C. H., Sutorik, A. C., Kaschak, D. M. & Mallouk, T. E., Jan 1 1997, In : Materials Research Society Symposium - Proceedings. 446, p. 377-381 5 p.

Research output: Contribution to journalConference article

Colloids
colloids
assembly
Adsorption
cations
1995
6 Citations (Scopus)

Synthesis of porous transition metal oxides by the salt-gel method

Stein, A., Fendorf, M., Jarvie, T. P., Mueller, K. T., Garcia, M. E. & Mallouk, T. E., Jan 1 1995, In : Materials Research Society Symposium - Proceedings. 371, p. 69-79 11 p.

Research output: Contribution to journalConference article

Oxides
Transition metals
metal oxides
Silicates
Gels
1989
4 Citations (Scopus)

Computational analysis of protein structures: Sources, methods, systems and results

Lesk, A. & Tramontano, A., Jan 1 1989, In : Journal of research of the National Bureau of Standards. 94, 1, p. 85-93 9 p.

Research output: Contribution to journalConference article

Proteins
Genes
Molecular biology
Information retrieval systems
Nucleic acids
1988

Quantification of toxic chemicals in selected human populations

Holler, J. S., Patterson, D. G. J. & Smith, S. J., Jan 1 1988, In : Journal of research of the National Bureau of Standards. 93, 3, p. 412-413 2 p.

Research output: Contribution to journalConference article

Disease control
Lead compounds
Volatile organic compounds
Potable water
Gas chromatography