Biochemistry & Molecular Biology

  • United States

Research Output 1961 2020

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Review article
2016
68 Citations (Scopus)

Genome-Wide Analysis of RNA Secondary Structure

Bevilacqua, P. C., Ritchey, L. E., Su, Z. & Assmann, S. M., Nov 23 2016, In : Annual Review of Genetics. 50, p. 235-266 32 p.

Research output: Contribution to journalReview article

Genome
RNA
Base Pairing
RNA Splicing
RNA Probes
2215 Citations (Scopus)

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

Klionsky, D. J., Abdelmohsen, K., Abe, A., Abedin, M. J., Abeliovich, H., Arozena, A. A., Adachi, H., Adams, C. M., Adams, P. D., Adeli, K., Adhihetty, P. J., Adler, S. G., Agam, G., Agarwal, R., Aghi, M. K., Agnello, M., Agostinis, P., Aguilar, P. V., Aguirre-Ghiso, J., Airoldi, E. M. & 2,442 others, Ait-Si-Ali, S., Akematsu, T., Akporiaye, E. T., Al-Rubeai, M., Albaiceta, G. M., Albanese, C., Albani, D., Albert, M. L., Aldudo, J., Algül, H., Alirezaei, M., Alloza, I., Almasan, A., Almonte-Beceril, M., Alnemri, E. S., Alonso, C., Altan-Bonnet, N., Altieri, D. C., Alvarez, S., Alvarez-Erviti, L., Alves, S., Amadoro, G., Amano, A., Amantini, C., Ambrosio, S., Amelio, I., Amer, A. O., Amessou, M., Amon, A., An, Z., Anania, F. A., Andersen, S. U., Andley, U. P., Andreadi, C. K., Andrieu-Abadie, N., Anel, A., Ann, D. K., Anoopkumar-Dukie, S., Antonioli, M., Aoki, H., Apostolova, N., Aquila, S., Aquilano, K., Araki, K., Arama, E., Aranda, A., Araya, J., Arcaro, A., Arias, E., Arimoto, H., Ariosa, A. R., Armstrong, J. L., Arnould, T., Arsov, I., Asanuma, K., Askanas, V., Asselin, E., Atarashi, R., Atherton, S. S., Atkin, J. D., Attardi, L. D., Auberger, P., Auburger, G., Aurelian, L., Autelli, R., Avagliano, L., Avantaggiati, M. L., Avrahami, L., Azad, N., Awale, S., Bachetti, T., Backer, J. M., Bae, D. H., Bae, J. S., Bae, O. N., Bae, S. H., Baehrecke, E. H., Baek, S. H., Baghdiguian, S., Bagniewska-Zadworna, A., Bai, H., Bai, J., Bai, X. Y., Bailly, Y., Balaji, K. N., Balduini, W., Ballabio, A., Balzan, R., Banerjee, R., Bánhegyi, G., Bao, H., Barbeau, B., Barrachina, M. D., Barreiro, E., Bartel, B., Bartolomé, A., Bassham, D. C., Bassi, M. T., Bast, R. C., Basu, A., Batista, M. T., Batoko, H., Battino, M., Bauckman, K., Baumgarner, B. L., Bayer, K. U., Beale, R., Beaulieu, J. F., Beck, G. R., Becker, C., Beckham, J. D., Bédard, P. A., Bednarski, P. J., Begley, T. J., Behl, C., Behrends, C., Behrens, G. M. N., Behrns, K. E., Bejarano, E., Belaid, A., Belleudi, F., Bénard, G., Berchem, G., Bergamaschi, D., Bergami, M., Berkhout, B., Berliocchi, L., Bernard, A., Bernard, M., Bernassola, F., Bertolotti, A., Bess, A. S., Besteiro, S., Bettuzzi, S., Bhalla, S., Bhattacharyya, S., Bhutia, S. K., Biagosch, C., Bianchi, M. W., Biard-Piechaczyk, M., Billes, V., Bincoletto, C., Bingol, B., Bird, S. W., Bitoun, M., Bjedov, I., Blackstone, C., Blanc, L., Blanco, G. A., Blomhoff, H. K., Boada-Romero, E., Böckler, S., Boes, M., Boesze-Battaglia, K., Boise, L. H., Bolino, A., Boman, A., Bonaldo, P., Bordi, M., Bosch, J., Botana, L. M., Botti, J., Bou, G., Bouché, M., Bouchecareilh, M., Boucher, M. J., Boulton, M. E., Bouret, S. G., Boya, P., Boyer-Guittaut, M., Bozhkov, P. V., Brady, N., Braga, V. M. M., Brancolini, C., Braus, G. H., Bravo-San-Pedro, J. M., Brennan, L. A., Bresnick, E. H., Brest, P., Bridges, D., Bringer, M. A., Brini, M., Brito, G. C., Brodin, B., Brookes, P. S., Brown, E. J., Brown, K., Broxmeyer, H. E., Bruhat, A., Brum, P. C., Brumell, J. H., Brunetti-Pierri, N., Bryson-Richardson, R. J., Buch, S., Buchan, A. M., Budak, H., Bulavin, D. V., Bultman, S. J., Bultynck, G., Bumbasirevic, V., Burelle, Y., Burke, R. E., Burmeister, M., Bütikofer, P., Caberlotto, L., Cadwell, K., Cahova, M., Cai, D., Cai, J., Cai, Q., Calatayud, S., Camougrand, N., Campanella, M., Campbell, G. R., Campbell, M., Campello, S., Candau, R., Caniggia, I., Cantoni, L., Cao, L., Caplan, A. B., Caraglia, M., Cardinali, C., Cardoso, S. M., Carew, J. S., Carleton, L. A., Carlin, C. R., Carloni, S., Carlsson, S. R., Carmona-Gutierrez, D., Carneiro, L. A. M., Carnevali, O., Carra, S., Carrier, A., Carroll, B., Casas, C., Casas, J., Cassinelli, G., Castets, P., Castro-Obregon, S., Cavallini, G., Ceccherini, I., Cecconi, F., Cederbaum, A. I., Ceña, V., Cenci, S., Cerella, C., Cervia, D., Cetrullo, S., Chaachouay, H., Chae, H. J., Chagin, A. S., Chai, C. Y., Chakrabarti, G., Chamilos, G., Chan, E. Y. W., Chan, M. T. V., Chandra, D., Chandra, P., Chang, C. P., Chang, R. C. C., Chang, T. Y., Chatham, J. C., Chatterjee, S., Chauhan, S., Che, Y., Cheetham, M. E., Cheluvappa, R., Chen, C. J., Chen, G., Chen, G. C., Chen, G., Chen, H., Chen, J. W., Chen, J. K., Chen, M., Chen, M., Chen, P., Chen, Q., Chen, Q., Chen, S. D., Chen, S., Chen, S. S. L., Chen, W., Chen, W. J., Chen, W. Q., Chen, W., Chen, X., Chen, Y. H., Chen, Y. G., Chen, Y., Chen, Y., Chen, Y., Chen, Y. J., Chen, Y. Q., Chen, Y., Chen, Z., Chen, Z., Cheng, A., Cheng, C. H. K., Cheng, H., Cheong, H., Cherry, S., Chesney, J., Cheung, C. H. A., Chevet, E., Chi, H. C., Chi, S. G., Chiacchiera, F., Chiang, H. L., Chiarelli, R., Chiariello, M., Chieppa, M., Chin, L. S., Chiong, M., Chiu, G. N. C., Cho, D. H., Cho, S. G., Cho, W. C., Cho, Y. Y., Cho, Y. S., Choi, A. M. K., Choi, E. J., Choi, E. K., Choi, J., Choi, M. E., Choi, S. I., Chou, T. F., Chouaib, S., Choubey, D., Choubey, V., Chow, K. C., Chowdhury, K., Chu, C. T., Chuang, T. H., Chun, T., Chung, H., Chung, T., Chung, Y. L., Chwae, Y. J., Cianfanelli, V., Ciarcia, R., Ciechomska, I. A., Ciriolo, M. R., Cirone, M., Claerhout, S., Clague, M. J., Clària, J., Clarke, P. G. H., Clarke, R., Clementi, E., Cleyrat, C., Cnop, M., Coccia, E. M., Cocco, T., Codogno, P., Coers, J., Cohen, E. E. W., Colecchia, D., Coletto, L., Coll, N. S., Colucci-Guyon, E., Comincini, S., Condello, M., Cook, K. L., Coombs, G. H., Cooper, C. D., Cooper, J. M., Coppens, I., Corasaniti, M. T., Corazzari, M., Corbalan, R., Corcelle-Termeau, E., Cordero, M. D., Corral-Ramos, C., Corti, O., Cossarizza, A., Costelli, P., Costes, S., Cotman, S. L., Coto-Montes, A., Cottet, S., Couve, E., Covey, L. R., Cowart, L. A., Cox, J. S., Coxon, F. P., Coyne, C. B., Cragg, M. S., Craven, R. J., Crepaldi, T., Crespo, J. L., Criollo, A., Crippa, V., Cruz, M. T., Cuervo, A. M., Cuezva, J. M., Cui, T., Cutillas, P. R., Czaja, M. J., Czyzyk-Krzeska, M. F., Dagda, R. K., Dahmen, U., Dai, C., Dai, W., Dai, Y., Dalby, K. N., Valle, L. D., Dalmasso, G., D'amelio, M., Damme, M., Darfeuille-Michaud, A., Dargemont, C., Darley-Usmar, V. M., Dasarathy, S., Dasgupta, B., Dash, S., Dass, C. R., Davey, H. M., Davids, L. M., Dávila, D., Davis, R. J., Dawson, T. M., Dawson, V. L., Daza, P., de Belleroche, J., de Figueiredo, P., de Figueiredo, R. C. B. Q., de la Fuente, J., De Martino, L., De Matteis, A., De Meyer, G. R. Y., De Milito, A., De Santi, M., de Souza, W., De Tata, V., De Zio, D., Debnath, J., Dechant, R., Decuypere, J. P., Deegan, S., Dehay, B., Del Bello, B., Del Re, D. P., Delage-Mourroux, R., Delbridge, L. M. D., Deldicque, L., Delorme-Axford, E., Deng, Y., Dengjel, J., Denizot, M., Dent, P., Der, C. J., Deretic, V., Derrien, B., Deutsch, E., Devarenne, T. P., Devenish, R. J., Di Bartolomeo, S., Di Daniele, N., Di Domenico, F., Di Nardo, A., Di Paola, S., Di Pietro, A., Di Renzo, L., Di Antonio, A., Díaz-Araya, G., Díaz-Laviada, I., Diaz-Meco, M. T., Diaz-Nido, J., Dickey, C. A., Dickson, R. C., Diederich, M., Digard, P., Dikic, I., Dinesh-Kumar, S. P., Ding, C., Ding, W. X., Ding, Z., Dini, L., Distler, J. H. W., Diwan, A., Djavaheri-Mergny, M., Dmytruk, K., Dobson, R. C. J., Doetsch, V., Dokladny, K., Dokudovskaya, S., Donadelli, M., Dong, X. C., Dong, X., Dong, Z., Donohue, T. M., Donohue-Jr, T. M., Doran, K. S., D'orazi, G., Dorn, G. W., Dosenko, V., Dridi, S., Drucker, L., Du, J., Du, L. L., Du, L., du Toit, A., Dua, P., Duan, L., Duann, P., Dubey, V. K., Duchen, M. R., Duchosal, M. A., Duez, H., Dugail, I., Dumit, V. I., Duncan, M. C., Dunlop, E. A., Dunn, W. A., Dupont, N., Dupuis, L., Durán, R. V., Durcan, T. M., Duvezin-Caubet, S., Duvvuri, U., Eapen, V., Ebrahimi-Fakhari, D., Echard, A., Eckhart, L., Edelstein, C. L., Edinger, A. L., Eichinger, L., Eisenberg, T., Eisenberg-Lerner, A., Eissa, N. T., El-Deiry, W. S., El-Khoury, V., Elazar, Z., Eldar-Finkelman, H., Elliott, C. J. H., Emanuele, E., Emmenegger, U., Engedal, N., Engelbrecht, A. M., Engelender, S., Enserink, J. M., Erdmann, R., Erenpreisa, J., Eri, R., Eriksen, J. L., Erman, A., Escalante, R., Eskelinen, E. L., Espert, L., Esteban-Martínez, L., Evans, T. J., Fabri, M., Fabrias, G., Fabrizi, C., Facchiano, A., Færgeman, N. J., Faggioni, A., Fairlie, W. D., Fan, C., Fan, D., Fan, J., Fang, S., Fanto, M., Fanzani, A., Farkas, T., Faure, M., Favier, F. B., Fearnhead, H., Federici, M., Fei, E., Felizardo, T. C., Feng, H., Feng, Y., Feng, Y., Ferguson, T. A., Fernández, Á. F., Fernandez-Barrena, M. G., Fernandez-Checa, J. C., Fernández-López, A., Fernandez-Zapico, M. E., Feron, O., Ferraro, E., Ferreira-Halder, C. V., Fesus, L., Feuer, R., Fiesel, F. C., Filippi-Chiela, E. C., Filomeni, G., Fimia, G. M., Fingert, J. H., Finkbeiner, S., Finkel, T., Fiorito, F., Fisher, P. B., Flajolet, M., Flamigni, F., Florey, O., Florio, S., Floto, R. A., Folini, M., Follo, C., Fon, E. A., Fornai, F., Fortunato, F., Fraldi, A., Franco, R., Francois, A., François, A., Frankel, L. B., Fraser, I. D. C., Frey, N., Freyssenet, D. G., Frezza, C., Friedman, S. L., Frigo, D. E., Fu, D., Fuentes, J. M., Fueyo, J., Fujitani, Y., Fujiwara, Y., Fujiya, M., Fukuda, M., Fulda, S., Fusco, C., Gabryel, B., Gaestel, M., Gailly, P., Gajewska, M., Galadari, S., Galili, G., Galindo, I., Galindo, M. F., Galliciotti, G., Galluzzi, L., Galluzzi, L., Galy, V., Gammoh, N., Gandy, S., Ganesan, A. K., Ganesan, S., Ganley, I. G., Gannagé, M., Gao, F. B., Gao, F., Gao, J. X., Nannig, L. G., Véscovi, E. G., Garcia-Macía, M., Garcia-Ruiz, C., Garg, A. D., Garg, P. K., Gargini, R., Gassen, N. C., Gatica, D., Gatti, E., Gavard, J., Gavathiotis, E., Ge, L., Ge, P., Ge, S., Gean, P. W., Gelmetti, V., Genazzani, A. A., Geng, J., Genschik, P., Gerner, L., Gestwicki, J. E., Gewirtz, D. A., Ghavami, S., Ghigo, E., Ghosh, D., Giammarioli, A. M., Giampieri, F., Giampietri, C., Giatromanolaki, A., Gibbings, D. J., Gibellini, L., Gibson, S. B., Ginet, V., Giordano, A., Giorgini, F., Giovannetti, E., Girardin, S. E., Gispert, S., Giuliano, S., Gladson, C. L., Glavic, A., Gleave, M., Godefroy, N., Gogal, R. M., Gokulan, K., Goldman, G. H., Goletti, D., Goligorsky, M. S., Gomes, A. V., Gomes, L. C., Gomez, H., Gomez-Manzano, C., Gómez-Sánchez, R., Gonçalves, D. A. P., Goncu, E., Gong, Q., Gongora, C., Gonzalez, C. B., Gonzalez-Alegre, P., Gonzalez-Cabo, P., González-Polo, R. A., Goping, I. S., Gorbea, C., Gorbunov, N. V., Goring, D. R., Gorman, A. M., Gorski, S. M., Goruppi, S., Goto-Yamada, S., Gotor, C., Gottlieb, R. A., Gozes, I., Gozuacik, D., Graba, Y., Graef, M., Granato, G. E., Grant, G. D., Grant, S., Gravina, G. L., Green, D. R., Greenhough, A., Greenwood, M. T., Grimaldi, B., Gros, F., Grose, C., Groulx, J. F., Gruber, F., Grumati, P., Grune, T., Guan, J. L., Guan, K. L., Guerra, B., Guillen, C., Gulshan, K., Gunst, J., Guo, C., Guo, L., Guo, M., Guo, W., Guo, X. G., Gust, A. A., Gustafsson, Å. B., Gutierrez, E., Gutierrez, M. G., Gwak, H. S., Haas, A., Haber, J. E., Hadano, S., Hagedorn, M., Hahn, D. R., Halayko, A. J., Hamacher-Brady, A., Hamada, K., Hamai, A., Hamann, A., Hamasaki, M., Hamer, I., Hamid, Q., Hammond, E. M., Han, F., Han, W., Handa, J. T., Hanover, J. A., Hansen, M., Harada, M., Harhaji-Trajkovic, L., Harper, J. W., Harrath, A. H., Harris, A. L., Harris, J., Hasler, U., Hasselblatt, P., Hasui, K., Hawley, R. G., Hawley, T. S., He, C., He, C. Y., He, F., He, G., He, R. R., He, X. H., He, Y. W., He, Y. Y., Heath, J. K., Hébert, M. J., Heinzen, R. A., Helgason, G. V., Hensel, M., Henske, E. P., Her, C., Herman, P. K., Hernández, A., Hernandez, C., Hernández-Tiedra, S., Hetz, C., Hiesinger, P. R., Higaki, K., Hilfiker, S., Hill, B. G., Hill, J. A., Hill, W. D., Hino, K., Hofius, D., Hofman, P., Höglinger, G. U., Höhfeld, J., Holz, M. K., Hong, Y., Hood, D. A., Hoozemans, J. J. M., Hoppe, T., Hsu, C., Hsu, C. Y., Hsu, L. C., Hu, D., Hu, G., Hu, H. M., Hu, H., Hu, M. C., Hu, Y. C., Hu, Z. W., Hua, F., Hua, Y., Huang, C., Huang, H. L., Huang, K. H., Huang, K. Y., Huang, S., Huang, S., Huang, W. P., Huang, Y. R., Huang, Y., Huang, Y., Huber, T. B., Huebbe, P., Huh, W. K., Hulmi, J. J., Hur, G. M., Hurley, J. H., Husak, Z., Hussain, S. N. A., Hussain, S., Hwang, J. J., Hwang, S., Hwang, T. I. S., Ichihara, A., Imai, Y., Imbriano, C., Inomata, M., Into, T., Iovane, V., Iovanna, J. L., Iozzo, R. V., Ip, N. Y., Irazoqui, J. E., Iribarren, P., Isaka, Y., Isakovic, A. J., Ischiropoulos, H., Isenberg, J. S., Ishaq, M., Ishida, H., Ishii, I., Ishmael, J. E., Isidoro, C., Isobe, K. I., Isono, E., Issazadeh-Navikas, S., Itahana, K., Itakura, E., Ivanov, A. I., Iyer, A. K. V., Izquierdo, J. M., Izumi, Y., Izzo, V., Jäättelä, M., Jaber, N., Jackson, D. J., Jackson, W. T., Jacob, T. G., Jacques, T. S., Jagannath, C., Jain, A., Jana, N. R., Jang, B. K., Jani, A., Janji, B., Jannig, P. R., Jansson, P. J., Jean, S., Jendrach, M., Jeon, J. H., Jessen, N., Jeung, E. B., Jia, K., Jia, L., Jiang, H., Jiang, H., Jiang, L., Jiang, T., Jiang, X., Jiang, X., Jiang, Y., Jiang, Y., Jiménez, A., Jin, C., Jin, H., Jin, L., Jin, M., Jin, S., Jinwal, U. K., Jo, E. K., Johansen, T., Johnson, D. E., Johnson, G. V. W., Johnson, J. D., Jonasch, E., Jones, C., Joosten, L. A. B., Jordan, J., Joseph, A. M., Joseph, B., Joubert, A. M., Ju, D., Ju, J., Juan, H. F., Juenemann, K., Juhász, G., Jung, H. S., Jung, J. U., Jung, Y. K., Jungbluth, H., Justice, M. J., Jutten, B., Kaakoush, N. O., Kaarniranta, K., Kaasik, A., Kabuta, T., Kaeffer, B., Kågedal, K., Kahana, A., Kajimura, S., Kakhlon, O., Kalia, M., Kalvakolanu, D. V., Kamada, Y., Kambas, K., Kaminskyy, V. O., Kampinga, H. H., Kandouz, M., Kang, C., Kang, R., Kang, T. C., Kanki, T., Kanneganti, T. D., Kanno, H., Kanthasamy, A. G., Kantorow, M., Kaparakis-Liaskos, M., Kapuy, O., Karantza, V., Karim, M. R., Karmakar, P., Kaser, A., Kaushik, S., Kawula, T., Kaynar, A. M., Ke, P. Y., Ke, Z. J., Kehrl, J. H., Keller, K. E., Kemper, J. K., Kenworthy, A. K., Kepp, O., Kern, A., Kesari, S., Kessel, D., Ketteler, R., Kettelhut, I. D. C., Khambu, B., Khan, M. M., Khandelwal, V. K. M., Khare, S., Kiang, J. G., Kiger, A. A., Kihara, A., Kim, A. L., Kim, C. H., Kim, D. R., Kim, D. H., Kim, E. K., Kim, H. Y., Kim, H. R., Kim, J. S., Kim, J. H., Kim, J. C., Kim, J. H., Kim, K. W., Kim, M. D., Kim, M. M., Kim, P. K., Kim, S. W., Kim, S. Y., Kim, Y. S., Kim, Y., Kimchi, A., Kimmelman, A. C., Kimura, T., King, J. S., Kirkegaard, K., Kirkin, V., Kirshenbaum, L. A., Kishi, S., Kitajima, Y., Kitamoto, K., Kitaoka, Y., Kitazato, K., Kley, R. A., Klimecki, W. T., Klinkenberg, M., Klucken, J., Knævelsrud, H., Knecht, E., Knuppertz, L., Ko, J. L., Kobayashi, S., Koch, J. C., Koechlin-Ramonatxo, C., Koenig, U., Koh, Y. H., Köhler, K., Kohlwein, S. D., Koike, M., Komatsu, M., Kominami, E., Kong, D., Kong, H. J., Konstantakou, E. G., Kopp, B. T., Korcsmaros, T., Korhonen, L., Korolchuk, V. I., Koshkina, N. V., Kou, Y., Koukourakis, M. I., Koumenis, C., Kovács, A. L., Kovács, T., Kovacs, W. J., Koya, D., Kraft, C., Krainc, D., Kramer, H., Kravic-Stevovic, T., Krek, W., Kretz-Remy, C., Krick, R., Krishnamurthy, M., Kriston-Vizi, J., Kroemer, G., Kruer, M. C., Kruger, R., Ktistakis, N. T., Kuchitsu, K., Kuhn, C., Kumar, A. P., Kumar, A., Kumar, A., Kumar, D., Kumar, D., Kumar, R., Kumar, S., Kundu, M., Kung, H. J., Kuno, A., Kuo, S. H., Kuret, J., Kurz, T., Kwok, T., Kwon, T. K., Kwon, Y. T., Kyrmizi, I., La Spada, A. R., Lafont, F., Lahm, T., Lakkaraju, A., Lam, T., Lamark, T., Lancel, S., Landowski, T. H., Lane, D. J. R., Lane, J. 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D., Zhang, F., Zhang, G., Zhang, G. C., Zhang, H., Zhang, H., Zhang, H., Zhang, J., Zhang, J., Zhang, J., Zhang, J. P., Zhang, L., Zhang, L., Zhang, L., Zhang, M. Y., Zhang, X., Zhang, X. D., Zhang, Y., Zhang, Y., Zhang, Y., Zhang, Y., Zhang, Y., Zhao, M., Zhao, W. L., Zhao, X., Zhao, Y. G., Zhao, Y., Zhao, Y., Zhao, Y. X., Zhao, Z., Zhao, Z. J., Zheng, D., Zheng, X. L., Zheng, X., Zhivotovsky, B., Zhong, Q., Zhou, G. Z., Zhou, G., Zhou, H., Zhou, S. F., Zhou, X. J., Zhu, H., Zhu, H., Zhu, W. G., Zhu, W., Zhu, X. F., Zhu, Y., Zhuang, S. M., Zhuang, X., Ziparo, E., Zois, C. E., Zoladek, T., Zong, W. X., Zorzano, A. & Zughaier, S. M., Jan 21 2016, In : Autophagy. 12, 1, p. 1-222 222 p.

Research output: Contribution to journalReview article

5 Citations (Scopus)

NMR-Based Metabolomics and Its Application in Drug Metabolism and Cancer Research

Zhang, L., Hatzakis, E. & Patterson, A. D., Oct 1 2016, In : Current Pharmacology Reports. 2, 5, p. 231-240 10 p.

Research output: Contribution to journalReview article

Metabolomics
Metabolism
Nuclear magnetic resonance
Research
Pharmaceutical Preparations
4 Citations (Scopus)

Omics Approaches to Probe Microbiota and Drug Metabolism Interactions

Nichols, R. G., Hume, N. E., Smith, P. B., Peters, J. M. & Patterson, A. D., Dec 19 2016, In : Chemical Research in Toxicology. 29, 12, p. 1987-1997 11 p.

Research output: Contribution to journalReview article

Microbiota
Drug Interactions
Metabolism
Pharmaceutical Preparations
Metabolites
33 Citations (Scopus)

Recognition of the nucleosome by chromatin factors and enzymes

McGinty, R. K. & Tan, S., Apr 1 2016, In : Current Opinion in Structural Biology. 37, p. 54-61 8 p.

Research output: Contribution to journalReview article

Nucleosomes
Chromatin
Enzymes
Genome
Arginine
11 Citations (Scopus)

Single-particle cryo-EM data acquisition by using direct electron detection camera

Wu, S., Armache, J-P. & Cheng, Y., Feb 1 2016, In : Microscopy (Oxford, England). 65, 1, p. 35-41 7 p.

Research output: Contribution to journalReview article

Open Access
data acquisition
Data acquisition
Cameras
cameras
Electrons
15 Citations (Scopus)

The enzymatic conversion of major algal and cyanobacterial carbohydrates to bioethanol

Al Abdallah, Q., Nixon, B. T. & Fortwendel, J. R., Jan 1 2016, In : Frontiers in Energy Research. 4, NOV, 36.

Research output: Contribution to journalReview article

Bioethanol
Polysaccharides
Carbohydrates
Glucose
Food storage
2015
14 Citations (Scopus)

Acetate metabolism in anaerobes from the domain Archaea

Ferry, J. G., Jun 9 2015, In : Life. 5, 2, p. 1454-1471 18 p.

Research output: Contribution to journalReview article

anaerobes
Archaea
metabolism
Hydrothermal Vents
Metabolism
54 Citations (Scopus)

Adaptive and acclimative responses of cyanobacteria to far-red light

Gan, F. & Bryant, D. A., Oct 1 2015, In : Environmental microbiology. 17, 10, p. 3450-3465 16 p.

Research output: Contribution to journalReview article

far-red light
Cyanobacteria
cyanobacterium
Light
chlorophyll
39 Citations (Scopus)

Auxiliary iron-sulfur cofactors in radical SAM enzymes

Lanz, N. D. & Booker, S. J., Jun 1 2015, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1853, 6, p. 1316-1334 19 p.

Research output: Contribution to journalReview article

Sulfur
Methionine
Iron
Enzymes
Protein S
29 Citations (Scopus)

Halogenated indigo dyes: A likely source of 1,3,6,8-tetrabromocarbazole and some other halogenated carbazoles in the environment

Parette, R., McCrindle, R., McMahon, K. S., Pena-Abaurrea, M., Reiner, E., Chittim, B., Riddell, N., Voss, G., Dorman, F. L. & Pearson, W. N., May 1 2015, In : Chemosphere. 127, p. 18-26 9 p.

Research output: Contribution to journalReview article

Carbazoles
Indigo Carmine
dye
Sediments
Coloring Agents
68 Citations (Scopus)

Mechanisms of ribosome rescue in bacteria

Keiler, K. C., May 24 2015, In : Nature Reviews Microbiology. 13, 5, p. 285-297 13 p.

Research output: Contribution to journalReview article

Ribosomes
Bacteria
Physiological Phenomena
Messenger RNA
Amino Acid Motifs
81 Citations (Scopus)

Mechanistic diversity of radical S-adenosylmethionine (SAM)-dependent methylation

Bauerle, M. R., Schwalm, E. L. & Booker, S. J., Feb 13 2015, In : Journal of Biological Chemistry. 290, 7, p. 3995-4002 8 p.

Research output: Contribution to journalReview article

S-Adenosylmethionine
Methylation
Carbon
Atoms
Enzymes
355 Citations (Scopus)

Methods of integrating data to uncover genotype-phenotype interactions

Ritchie, M. D., Holzinger, E. R., Li, R., Pendergrass, S. A. & Kim, D., Jan 1 2015, In : Nature Reviews Genetics. 16, 2, p. 85-97 13 p.

Research output: Contribution to journalReview article

Metabolomics
Genomics
Biomarkers
Genotype
Genome
14 Citations (Scopus)

Microtubules and cellulose biosynthesis: The emergence of new players

Li, S., Lei, L., Yingling, Y. G. & Gu, Y., Dec 1 2015, In : Current Opinion in Plant Biology. 28, p. 76-82 7 p.

Research output: Contribution to journalReview article

microtubules
cellulose
biosynthesis
cellulose synthase
plasma membrane
39 Citations (Scopus)

Mössbauer spectroscopy of Fe/S proteins

Pandelia, M. E., Lanz, N. D., Booker, S. J. & Krebs, C., Jun 1 2015, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1853, 6, p. 1395-1405 11 p.

Research output: Contribution to journalReview article

Protein S
Spectrum Analysis
Hydrogenase
Electron Spin Resonance Spectroscopy
Sulfur
26 Citations (Scopus)

Neuronal polarity: An evolutionary perspective

Rolls, M. M. & Jegla, T. J., Feb 15 2015, In : Journal of Experimental Biology. 218, 4, p. 572-580 9 p.

Research output: Contribution to journalReview article

axons
Axons
Dendrites
dendrites
vertebrate
119 Citations (Scopus)

Nucleosome structure and function

McGinty, R. K. & Tan, S., Mar 25 2015, In : Chemical Reviews. 115, 6, p. 2255-2273 19 p.

Research output: Contribution to journalReview article

Nucleosomes
Chromatin
Histone Acetyltransferases
Crystallization
Anchors
24 Citations (Scopus)

Protein-DNA binding in high-resolution

Mahony, S. & Pugh, B. F., Jul 4 2015, In : Critical Reviews in Biochemistry and Molecular Biology. 50, 4, p. 269-283 15 p.

Research output: Contribution to journalReview article

Chromatin Immunoprecipitation
DNA-Binding Proteins
Chromatin
Protein Footprinting
Exonucleases
241 Citations (Scopus)

Recent functional insights into the role of (p)ppGpp in bacterial physiology

Hauryliuk, V., Atkinson, G. C., Murakami, K., Tenson, T. & Gerdes, K., May 24 2015, In : Nature Reviews Microbiology. 13, 5, p. 298-309 12 p.

Research output: Contribution to journalReview article

Bacterial Physiological Phenomena
Guanosine Pentaphosphate
Guanosine Tetraphosphate
Guanosine Triphosphate
Bacteria
69 Citations (Scopus)

Sexual development in Plasmodium parasites: Knowing when it's time to commit

Josling, G. A. & Llinas, M., Aug 14 2015, In : Nature Reviews Microbiology. 13, 9, p. 573-587 15 p.

Research output: Contribution to journalReview article

Sexual Development
Plasmodium
Parasites
Sex Differentiation
Culicidae
41 Citations (Scopus)

Structural biology of bacterial RNA polymerase

Murakami, K. S., May 11 2015, In : Biomolecules. 5, 2, p. 848-864 17 p.

Research output: Contribution to journalReview article

Bacterial RNA
DNA-Directed RNA Polymerases
Transcription
X ray crystallography
X Ray Crystallography
66 Citations (Scopus)

Synthetic Nano- and Micromachines in Analytical Chemistry: Sensing, Migration, Capture, Delivery, and Separation

Duan, W., Wang, W., Das, S., Yadav, V., Mallouk, T. E. & Sen, A., Jul 22 2015, In : Annual Review of Analytical Chemistry. 8, p. 311-333 23 p.

Research output: Contribution to journalReview article

Micromotors
Chemical analysis
Flow of fluids
Pumps
75 Citations (Scopus)

The effects of chromatin organization on variation in mutation rates in the genome

Makova, K. D. & Hardison, R. C., Apr 19 2015, In : Nature Reviews Genetics. 16, 4, p. 213-223 11 p.

Research output: Contribution to journalReview article

Mutation Rate
Chromatin
Genome
Mutation
Germ-Line Mutation
67 Citations (Scopus)

The RNA structurome: Transcriptome-wide structure probing with next-generation sequencing

Kwok, C. K., Tang, Y., Assmann, S. M. & Bevilacqua, P. C., Jan 1 2015, In : Trends in Biochemical Sciences. 40, 4, p. 221-232 12 p.

Research output: Contribution to journalReview article

Transcriptome
RNA
Cells
Polyadenylation
Physiology
2014
271 Citations (Scopus)

Aryl hydrocarbon receptor ligands in cancer: Friend and foe

Murray, I. A., Patterson, A. D. & Perdew, G. H., Nov 24 2014, In : Nature Reviews Cancer. 14, 12, p. 801-814 14 p.

Research output: Contribution to journalReview article

Aryl Hydrocarbon Receptors
Ligands
Neoplasms
Carcinogenesis
Dioxins
60 Citations (Scopus)

Cell wall, cytoskeleton, and cell expansion in higher plants

Bashline, L., Lei, L., Li, S. & Gu, Y., Apr 2014, In : Molecular plant. 7, 4, p. 586-600 15 p.

Research output: Contribution to journalReview article

cytoskeleton
Cytoskeleton
Cell Wall
cell walls
Plant Cells
344 Citations (Scopus)

Defining functional DNA elements in the human genome

Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R. & 10 others, Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J. A., Weng, Z., White, K. P. & Hardison, R. C., Apr 29 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 17, p. 6131-6138 8 p.

Research output: Contribution to journalReview article

Human Genome
Genome
DNA
Encyclopedias
Genomics
23 Citations (Scopus)

Dissecting the molecular mechanism underlying the intimate relationship between cellulose microfibrils and cortical microtubules

Lei, L., Li, S., Bashline, L. & Gu, Y., Mar 13 2014, In : Frontiers in Plant Science. 5, MAR, 90.

Research output: Contribution to journalReview article

microtubules
cellulose
cellulose synthase
cell walls
cells
47 Citations (Scopus)

EMERGEing progress in genomics-the first seven years

Crawford, D. C., Crosslin, D. R., Tromp, G., Kullo, I. J., Kuivaniemi, H., Hayes, M. G., Denny, J. C., Bush, W. S., Haines, J. L., Roden, D. M., McCarty, C. A., Jarvik, G. P. & Ritchie, M. D., Jan 1 2014, In : Frontiers in Genetics. 5, JUN, 184.

Research output: Contribution to journalReview article

Electronic Health Records
Genomics
National Human Genome Research Institute (U.S.)
Clinical Decision Support Systems
Genome
13 Citations (Scopus)

Genomic architecture of pharmacological efficacy and adverse events

Chhibber, A., Kroetz, D. L., Tantisira, K. G., Mcgeachie, M., Cheng, C., Plenge, R., Stahl, E., Sadee, W., Ritchie, M. D. & Pendergrass, S. A., Dec 1 2014, In : Pharmacogenomics. 15, 16, p. 2025-2048 24 p.

Research output: Contribution to journalReview article

Pharmacology
Pharmacological Biomarkers
Biomarkers
Genes
Pharmacogenetics
19 Citations (Scopus)

Imaging Plasmodium immunobiology in the liver, brain, and lung

Frevert, U., Nacer, A., Cabrera, M., Movila, A. & Leberl, M., Feb 1 2014, In : Parasitology International. 63, 1, p. 171-186 16 p.

Research output: Contribution to journalReview article

Plasmodium
Parasites
Lung
Liver
Brain
27 Citations (Scopus)

Microbial determinants of biochemical individuality and their impact on toxicology and pharmacology

Patterson, A. D. & Turnbaugh, P. J., Nov 4 2014, In : Cell Metabolism. 20, 5, p. 761-768 8 p.

Research output: Contribution to journalReview article

Precision Medicine
Individuality
Toxicology
Research Design
Pharmacology
25 Citations (Scopus)

NusG/Spt5: Are there common functions of this ubiquitous transcription elongation factor?

Yakhnin, A. V. & Babitzke, P., Apr 2014, In : Current Opinion in Microbiology. 18, 1, p. 68-71 4 p.

Research output: Contribution to journalReview article

Peptide Elongation Factors
DNA-Directed RNA Polymerases
Transcription Factors
DNA
RNA
8 Citations (Scopus)

Osteogenesis imperfecta – Više-sustavna, doživotna bolesti i njen utjecaj na obitelj

Translated title of the contribution: Osteogenesis imperfecta – Multi-systemic and life-long disease that affects whole familyPrimorac, D., Antičević, D., Barišić, I., Hudetz, D. & Ivković, A., Jan 1 2014, In : Collegium Antropologicum. 38, 2, p. 767-772 6 p.

Research output: Contribution to journalReview article

Osteogenesis Imperfecta
Disease
Capillary Fragility
Tooth
Joint Instability
31 Citations (Scopus)

The trafficking of the cellulose synthase complex in higher plants

Bashline, L., Li, S. & Gu, Y., Oct 1 2014, In : Annals of botany. 114, 6, p. 1059-1067 9 p.

Research output: Contribution to journalReview article

cellulose synthase
cellulose
cell walls
plasma membrane
biosynthesis
2013
20 Citations (Scopus)

Competence and natural transformation in vibrios

Sun, Y., Bernardy, E. E., Hammer, B. K. & Miyashiro, T., Aug 1 2013, In : Molecular Microbiology. 89, 4, p. 583-595 13 p.

Research output: Contribution to journalReview article

Vibrionaceae
Vibrio cholerae
Vibrio
Mental Competency
Bacterial Transformation
362 Citations (Scopus)

Design and development of photoanodes for water-splitting dye-sensitized photoelectrochemical cells

Swierk, J. R. & Mallouk, T. E., Mar 21 2013, In : Chemical Society Reviews. 42, 6, p. 2357-2387 31 p.

Research output: Contribution to journalReview article

Photoelectrochemical cells
Coloring Agents
Water
Oxidation
Catalysts
878 Citations (Scopus)

Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation

Appel, A. M., Bercaw, J. E., Bocarsly, A. B., Dobbek, H., Dubois, D. L., Dupuis, M., Ferry, J. G., Fujita, E., Hille, R., Kenis, P. J. A., Kerfeld, C. A., Morris, R. H., Peden, C. H. F., Portis, A. R., Ragsdale, S. W., Rauchfuss, T. B., Reek, J. N. H., Seefeldt, L. C., Thauer, R. K. & Waldrop, G. L., Aug 14 2013, In : Chemical Reviews. 113, 8, p. 6621-6658 38 p.

Research output: Contribution to journalReview article

Biological systems
Catalysis
Energy security
Chemical bonds
Energy conversion

Future virology: A mitochondriac's perspective

Cameron, C. E., Oct 1 2013, In : Future Virology. 8, 10, p. 933-935 3 p.

Research output: Contribution to journalReview article

Virology
Immunity
Mitochondria
62 Citations (Scopus)

Is selenium a potential treatment for cancer metastasis?

Chen, Y. C., Sandeep Prabhu, K. & Mastro, A. M., Apr 8 2013, In : Nutrients. 5, 4, p. 1149-1168 20 p.

Research output: Contribution to journalReview article

Selenium
metastasis
Selenoproteins
selenium
Neoplasm Metastasis
12 Citations (Scopus)

Metabolomics: An essential tool to understand the function of peroxisome proliferator-activated receptor alpha

Montanez, J. E., Peters, J. M., Correll, J. B., Gonzalez, F. J. & Patterson, A. D., Feb 1 2013, In : Toxicologic Pathology. 41, 2, p. 410-418 9 p.

Research output: Contribution to journalReview article

PPAR alpha
Peroxisome Proliferator-Activated Receptors
Metabolomics
Toxicity
Chemical and Drug Induced Liver Injury
20 Citations (Scopus)

Mutual regulation between Hippo signaling and actin cytoskeleton

Matsui, Y. & Lai, Z. C., Dec 1 2013, In : Protein and Cell. 4, 12, p. 904-910 7 p.

Research output: Contribution to journalReview article

Actin Cytoskeleton
Actins
Animal Behavior
Behavior Control
Cell Differentiation
14 Citations (Scopus)

Novel approaches for the accumulation of oxygenated intermediates to multi-millimolar concentrations

Krebs, C., Dassama, L. M. K., Matthews, M. L., Jiang, W., Price, J. C., Korboukh, V., Li, N. & Bollinger, Jr., J. M., Jan 1 2013, In : Coordination Chemistry Reviews. 257, 1, p. 234-243 10 p.

Research output: Contribution to journalReview article

chlorite dismutase
Enzymes
Oxygenases
Oxygenation
Molecular oxygen
75 Citations (Scopus)

On the essentiality of lipopolysaccharide to Gram-negative bacteria

Zhang, G., Meredith, T. C. & Kahne, D., Dec 1 2013, In : Current Opinion in Microbiology. 16, 6, p. 779-785 7 p.

Research output: Contribution to journalReview article

Gram-Negative Bacteria
Lipopolysaccharides
Membranes
Moraxella (Branhamella) catarrhalis
Acinetobacter baumannii
112 Citations (Scopus)

Peptidylarginine deiminases in citrullination, gene regulation, health and pathogenesis

Wang, S. & Wang, Y., Oct 1 2013, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1829, 10, p. 1126-1135 10 p.

Research output: Contribution to journalReview article

Gene expression
Arginine
Health
Enzymes
Genes

Primjena forenzične DNA analize: Interdisciplinarna perspektiva

Translated title of the contribution: Forensic DNA application: An interdisciplinary perspectiveProjić, P., Lauc, G. & Primorac, D., Oct 1 2013, In : Paediatria Croatica. 57, 4, p. 301-311 11 p.

Research output: Contribution to journalReview article

Single Nucleotide Polymorphism
DNA
Forensic Genetics
Population Genetics
Human Trafficking
34 Citations (Scopus)

Quorum sensing in the squid-Vibrio symbiosis.

Verma, S. C. & Miyashiro, T., 2013, In : International journal of molecular sciences. 14, 8, p. 16386-16401 16 p.

Research output: Contribution to journalReview article

symbiosis
Aliivibrio fischeri
Quorum Sensing
Decapodiformes
Vibrio
37 Citations (Scopus)

Regulated proteolysis: control of the Escherichia coli σ(E)-dependent cell envelope stress response.

Barchinger, S. E. & Ades, S. E., Jan 1 2013, In : Sub-Cellular Biochemistry. 66, p. 129-160 32 p.

Research output: Contribution to journalReview article

Proteolysis
Escherichia coli
Sigma Factor
Signal transduction
Peptide Hydrolases

Review of forensic DNA biology: A laboratory manual

Roy, R., Oct 8 2013, In : Journal of Chemical Education. 90, 10, p. 1265-1266 2 p.

Research output: Contribution to journalReview article

biology
DNA