Biochemistry & Molecular Biology

  • United States

Research Output 1961 2020

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Review article
2013
351 Citations (Scopus)

Small power: Autonomous nano- and micromotors propelled by self-generated gradients

Wang, W., Duan, W., Ahmed, S., Mallouk, T. E. & Sen, A., Jan 1 2013, In : Nano Today. 8, 5, p. 531-554 24 p.

Research output: Contribution to journalReview article

Micromotors
Physics
Eukaryotic Cells
Acoustics
Hot Temperature
26 Citations (Scopus)

The control of elongation by the yeast Ccr4-Not complex

Reese, J. C., Jan 1 2013, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1829, 1, p. 127-133 7 p.

Research output: Contribution to journalReview article

RNA Polymerase II
Yeast
Elongation
Yeasts
Transcription
302 Citations (Scopus)

The Electronic Medical Records and Genomics (eMERGE) Network: Past, present, and future

Gottesman, O., Kuivaniemi, H., Tromp, G., Faucett, W. A., Li, R., Manolio, T. A., Sanderson, S. C., Kannry, J., Zinberg, R., Basford, M. A., Brilliant, M., Carey, D. J., Chisholm, R. L., Chute, C. G., Connolly, J. J., Crosslin, D., Denny, J. C., Gallego, C. J., Haines, J. L., Hakonarson, H. & 11 others, Harley, J., Jarvik, G. P., Kohane, I., Kullo, I. J., Larson, E. B., McCarty, C., Ritchie, M. D., Roden, D. M., Smith, M. E., Böttinger, E. P. & Williams, M. S., Oct 1 2013, In : Genetics in Medicine. 15, 10, p. 761-771 11 p.

Research output: Contribution to journalReview article

Electronic Health Records
Genomics
Research
National Human Genome Research Institute (U.S.)
Medicine
7 Citations (Scopus)

The potential of trans-translation inhibitors as antibiotics

Keiler, K. C. & Alumasa, J. N., Oct 1 2013, In : Future microbiology. 8, 10, p. 1235-1237 3 p.

Research output: Contribution to journalReview article

Bacterial RNA
Pyrazinamide
Protein Biosynthesis
Drug Discovery
Anti-Bacterial Agents
2012
31 Citations (Scopus)

A genetic model for neurodevelopmental disease

Coe, B. P., Girirajan, S. & Eichler, E. E., Oct 1 2012, In : Current Opinion in Neurobiology. 22, 5, p. 829-836 8 p.

Research output: Contribution to journalReview article

Genetic Models
Genes
Technology
83 Citations (Scopus)

Ccr4-Not complex: The control freak of eukaryotic cells

Miller, J. E. & Reese, J. C., Jul 1 2012, In : Critical Reviews in Biochemistry and Molecular Biology. 47, 4, p. 315-333 19 p.

Research output: Contribution to journalReview article

Catabolite Repression
Eukaryotic Cells
Carbon
Gene expression
Messenger RNA
35 Citations (Scopus)

Cellulose synthase complexes: Composition and regulation

Lei, L., Li, S. & Gu, Y., Apr 17 2012, In : Frontiers in Plant Science. 3, APR, 75.

Research output: Contribution to journalReview article

cellulose synthase
microtubules
cellulose
cytoskeleton
actin
3 Citations (Scopus)
Nucleosomes
Chromosomes, Human, Pair 1
Chromosomes
Chromatin
Condensation
120 Citations (Scopus)

Genomic approaches towards finding cis-regulatory modules in animals

Hardison, R. C. & Taylor, J., Jul 1 2012, In : Nature Reviews Genetics. 13, 7, p. 469-483 15 p.

Research output: Contribution to journalReview article

Histone Code
Gene Expression
Cell Differentiation
Transcription Factors
Binding Sites
26 Citations (Scopus)

Human mitochondrial RNA polymerase: Structure-function, mechanism and inhibition

Arnold, J. J., Smidansky, E. D., Moustafa, I. & Cameron, C. E., Sep 1 2012, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1819, 9-10, p. 948-960 13 p.

Research output: Contribution to journalReview article

Mitochondrial Genome
Human Genome
DNA-Directed RNA Polymerases
Transcription
DNA Primase
50 Citations (Scopus)

Identification and function of auxiliary iron-sulfur clusters in radical SAM enzymes

Lanz, N. D. & Booker, S. J., Nov 1 2012, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1824, 11, p. 1196-1212 17 p.

Research output: Contribution to journalReview article

Sulfur
Iron
Enzymes
Biosynthesis
Ions
22 Citations (Scopus)

Integrating heterogeneous high-throughput data for meta-dimensional pharmacogenomics and disease-related studies

Holzinger, E. R. & Ritchie, M. D., Jan 1 2012, In : Pharmacogenomics. 13, 2, p. 213-222 10 p.

Research output: Contribution to journalReview article

Genetic Research
Systems Biology
Pharmacogenetics
Medical Genetics
Computer Simulation
45 Citations (Scopus)

Malaria parasite pre-erythrocytic infection: Preparation meets opportunity

Lindner, S. E., Miller, J. L. & Kappe, S. H. I., Mar 1 2012, In : Cellular Microbiology. 14, 3, p. 316-324 9 p.

Research output: Contribution to journalReview article

Malaria
Parasites
Sporozoites
Liver
Infection
16 Citations (Scopus)

Morphogenesis of the vulva and the vulval-uterine connection.

Gupta, B. P., Hanna-Rose, W. & Sternberg, P. W., Dec 1 2012, In : WormBook : the online review of C. elegans biology. p. 1-20 20 p.

Research output: Contribution to journalReview article

Vulva
Morphogenesis
Uterus
Cell Polarity
Gene Regulatory Networks
168 Citations (Scopus)

Next-generation sequencing data interpretation: Enhancing reproducibility and accessibility

Nekrutenko, A. & Taylor, J., Sep 1 2012, In : Nature Reviews Genetics. 13, 9, p. 667-672 6 p.

Research output: Contribution to journalReview article

Precision Medicine
Biological Science Disciplines
Ecology
Research Personnel
Technology
66 Citations (Scopus)

Shedding light on bioluminescence regulation in Vibrio fischeri

Miyashiro, T. & Ruby, E. G., Jun 1 2012, In : Molecular Microbiology. 84, 5, p. 795-806 12 p.

Research output: Contribution to journalReview article

Aliivibrio fischeri
Light
Quorum Sensing
Decapodiformes
Symbiosis
48 Citations (Scopus)
Precision Medicine
Genome-Wide Association Study
Pharmacogenetics
Genetic Association Studies
Medical Genetics

Transmembrane electric potential difference in the protein-pigment complex of photosystem 2

Mamedov, M. D., Kurashov, V. N., Petrova, I. O. & Semenov, A. Y., Sep 1 2012, In : Biochemistry (Moscow). 77, 9, p. 947-955 9 p.

Research output: Contribution to journalReview article

Pigments
Membrane Potentials
Protons
Solar Energy
Electrons
2011
15 Citations (Scopus)

Bifunctional transfer-messenger RNA

Keiler, K. C. & Ramadoss, N. S., Nov 1 2011, In : Biochimie. 93, 11, p. 1993-1997 5 p.

Research output: Contribution to journalReview article

Transfer RNA
Messenger RNA
Bacteria
RNA
Gene Expression Regulation
44 Citations (Scopus)

Central carbon metabolism of Plasmodium parasites

Olszewski, K. L. & Llinas, M., Feb 1 2011, In : Molecular and biochemical parasitology. 175, 2, p. 95-103 9 p.

Research output: Contribution to journalReview article

Plasmodium
Parasites
Carbon
Malaria
Carbon Cycle
57 Citations (Scopus)
Alkanes
Biosynthesis
Ferritins
Ribonucleotide Reductases
Iron
58 Citations (Scopus)

Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass

Ferry, J. G., Jun 1 2011, In : Current Opinion in Biotechnology. 22, 3, p. 351-357 7 p.

Research output: Contribution to journalReview article

formic acid
Methanogens
Biomass
Acetates
Bioconversion
109 Citations (Scopus)

High-resolution genome-wide mapping of the primary structure of chromatin

Zhang, Z. & Pugh, B. F., Jan 21 2011, In : Cell. 144, 2, p. 175-186 12 p.

Research output: Contribution to journalReview article

Chromosome Mapping
Chromatin
Genes
Nucleosomes
High-Throughput Nucleotide Sequencing
60 Citations (Scopus)

Neuroendocrine-immune interactions and responses to exercise

Fragala, M. S., Kraemer, W. J., Denegar, C. R., Maresh, C. M., Mastro, A. M. & Volek, J. S., Jul 29 2011, In : Sports Medicine. 41, 8, p. 621-639 19 p.

Research output: Contribution to journalReview article

Immune System
Neurosecretory Systems
Physiological Stress
Adaptive Immunity
Exercise
90 Citations (Scopus)

New target for inhibition of bacterial RNA polymerase: 'switch region'

Srivastava, A., Talaue, M., Liu, S., Degen, D., Ebright, R. Y., Sineva, E., Chakraborty, A., Druzhinin, S. Y., Chatterjee, S., Mukhopadhyay, J., Ebright, Y. W., Zozula, A., Shen, J., Sengupta, S., Niedfeldt, R. R., Xin, C., Kaneko, T., Irschik, H., Jansen, R., Donadio, S. & 2 others, Connell, N. & Ebright, R. H., Oct 1 2011, In : Current Opinion in Microbiology. 14, 5, p. 532-543 12 p.

Research output: Contribution to journalReview article

Bacterial RNA
DNA-Directed RNA Polymerases
Anti-Bacterial Agents
Drug Discovery
Binding Sites
26 Citations (Scopus)

Nucleosomes and the accessibility problem

Wang, X., Bai, L., Bryant, G. O. & Ptashne, M., Dec 1 2011, In : Trends in Genetics. 27, 12, p. 487-492 6 p.

Research output: Contribution to journalReview article

Nucleosomes
Nucleic Acid Regulatory Sequences
DNA-Binding Proteins
Protein Binding
Yeasts
87 Citations (Scopus)

Nucleosome structural studies

Tan, S. & Davey, C. A., Feb 1 2011, In : Current Opinion in Structural Biology. 21, 1, p. 128-136 9 p.

Research output: Contribution to journalReview article

Nucleosomes
Chromatin
Genetic Epigenesis
Nuclear Proteins
Metals
46 Citations (Scopus)

Promoter proximal pausing and the control of gene expression

Li, J. & Gilmour, D. S., Apr 1 2011, In : Current Opinion in Genetics and Development. 21, 2, p. 231-235 5 p.

Research output: Contribution to journalReview article

Gene Expression
Genes
DNA-Binding Proteins
Drosophila
Chromatin
85 Citations (Scopus)

Regulation of innate immunity through RNA structure and the protein kinase PKR

Nallagatla, S. R., Toroney, R. & Bevilacqua, P. C., Feb 1 2011, In : Current Opinion in Structural Biology. 21, 1, p. 119-127 9 p.

Research output: Contribution to journalReview article

eIF-2 Kinase
Innate Immunity
RNA
Double-Stranded RNA
Eukaryotic Initiation Factor-2
29 Citations (Scopus)

RNA localization in bacteria

Keiler, K. C., Apr 1 2011, In : Current Opinion in Microbiology. 14, 2, p. 155-159 5 p.

Research output: Contribution to journalReview article

RNA
Bacteria
Bacterial Physiological Phenomena
RNA-Binding Proteins
Gene Expression Regulation
42 Citations (Scopus)

S-RNase-based self-incompatibility in Petunia inflata

Meng, X., Sun, P. & Kao, T. H., Sep 1 2011, In : Annals of botany. 108, 4, p. 637-646 10 p.

Research output: Contribution to journalReview article

Petunia integrifolia
Solanaceae
Plantaginaceae
Rosaceae
pollen
7 Citations (Scopus)

Statistical Optimization Of Pharmacogenomics Association Studies: Key Considerations from Study Design to Analysis

Grady, B. J. & Ritchie, M. D., Mar 23 2011, In : Current Pharmacogenomics and Personalized Medicine. 9, 1, p. 41-66 26 p.

Research output: Contribution to journalReview article

Pharmacogenetics
Quality Control
Public Health Practice
Technology
Precision Medicine
40 Citations (Scopus)

Targeting the NS5A protein of HCV: An emerging option

Cordek, D. G., Bechtel, J. T., Maynard, A. T., Kazmierski, W. M. & Cameron, C. E., Sep 2011, In : Drugs of the Future. 36, 9, p. 691-711 21 p.

Research output: Contribution to journalReview article

Protein C
Hepacivirus
Genotype
Ribavirin
Phosphoproteins
111 Citations (Scopus)

The Apicomplexan AP2 family: Integral factors regulating Plasmodium development

Painter, H. J., Campbell, T. L. & Llinás, M., Mar 1 2011, In : Molecular and biochemical parasitology. 176, 1, p. 1-7 7 p.

Research output: Contribution to journalReview article

Plasmodium
Parasites
Malaria
Proteins
DNA-Binding Proteins
4 Citations (Scopus)

The trafficking and behavior of cellulose synthase and a glimpse of potential cellulose synthesis regulators

Bashline, L., Du, J. & Gu, Y., Oct 1 2011, In : Frontiers in Biology. 6, 5, p. 377-383 7 p.

Research output: Contribution to journalReview article

cellulose synthase
trafficking
Cellulose
cellulose
synthesis
9 Citations (Scopus)

Transmembrane charge transfer in photosynthetic reaction centers: Some similarities and distinctions

Semenov, A. Y., Kurashov, V. & Mamedov, M. D., Jul 1 2011, In : Journal of Photochemistry and Photobiology B: Biology. 104, 1-2, p. 326-332 7 p.

Research output: Contribution to journalReview article

Photosynthetic Reaction Center Complex Proteins
Photosystem I Protein Complex
Photosystem II Protein Complex
charge transfer
Electrons
85 Citations (Scopus)

What fraction of the human genome is functional?

Ponting, C. P. & Hardison, R. C., Nov 1 2011, In : Genome research. 21, 11, p. 1769-1776 8 p.

Research output: Contribution to journalReview article

Human Genome
Nucleotides
Genome
Sequence Alignment
Phylogeny
2010
31 Citations (Scopus)

A common neuronal response to alphaherpesvirus infection

Szpara, M. L., Kobiler, O. & Enquist, L. W., Sep 1 2010, In : Journal of Neuroimmune Pharmacology. 5, 3, p. 418-427 10 p.

Research output: Contribution to journalReview article

Infection
Herpesviridae
Genes
Suid Herpesvirus 1
Neurons
62 Citations (Scopus)

Beyond ribosome rescue: tmRNA and co-translational processes

Hayes, C. S. & Keiler, K. C., Jan 21 2010, In : FEBS Letters. 584, 2, p. 413-419 7 p.

Research output: Contribution to journalReview article

Ribosomes
Protein folding
Peptides
Protein Folding
Transfer RNA
128 Citations (Scopus)

Breast cancer metastasis to the bone: Mechanisms of bone loss

Chen, Y. C., Sosnoski, D. M. & Mastro, A. M., Dec 16 2010, In : Breast Cancer Research. 12, 6, 215.

Research output: Contribution to journalReview article

Osteoclasts
Osteoblasts
Breast Neoplasms
Neoplasm Metastasis
Bone and Bones
25 Citations (Scopus)

Cellulose synthase interacting protein: A new factor in cellulose synthesis

Gu, Y. & Somerville, C., Dec 1 2010, In : Plant Signaling and Behavior. 5, 12

Research output: Contribution to journalReview article

cellulose synthase
cellulose
synthesis
proteins
biopolymers
10 Citations (Scopus)

CO in methanogenesis

Ferry, J. G., Mar 1 2010, In : Annals of Microbiology. 60, 1, p. 1-12 12 p.

Research output: Contribution to journalReview article

Carbon Monoxide
carbon monoxide dehydrogenase
Acetyl Coenzyme A
Methane
Fresh Water
136 Citations (Scopus)

DNA-mediated charge transport in redox sensing and signaling

Genereux, J. C., Boal, A. K. & Barton, J. K., Feb 12 2010, In : Journal of the American Chemical Society. 132, 3, p. 891-905 15 p.

Research output: Contribution to journalReview article

Oxidation-Reduction
Charge transfer
DNA
Genes
Genome
51 Citations (Scopus)

Eating at the Table of Another: Metabolomics of Host-Parasite Interactions

Kafsack, B. F. C. & Llinas, M., Feb 18 2010, In : Cell Host and Microbe. 7, 2, p. 90-99 10 p.

Research output: Contribution to journalReview article

Host-Parasite Interactions
Metabolomics
Parasites
Eating
Parasitic Diseases
23 Citations (Scopus)

Expanding knowledge of P3 proteins in the poliovirus lifecycle

Cameron, C. E., Suk Oh, H. & Moustafa, I., Jun 1 2010, In : Future microbiology. 5, 6, p. 867-881 15 p.

Research output: Contribution to journalReview article

Poliovirus
Genome
Proteins
Viral RNA
Picornaviridae
928 Citations (Scopus)

Galaxy: A web-based genome analysis tool for experimentalists

Blankenberg, D., Kuster, G. V., Coraor, N., Ananda, G., Lazarus, R., Mangan, M., Nekrutenko, A. & Taylor, J., Feb 10 2010, In : Current Protocols in Molecular Biology. SUPPL. 89, p. 19.10.1-19.10.21

Research output: Contribution to journalReview article

Informatics
Web Browser
Genome
Molecular Biology
Software
127 Citations (Scopus)

Gene regulation by nucleosome positioning

Bai, L. & Morozov, A. V., Nov 1 2010, In : Trends in Genetics. 26, 11, p. 476-483 8 p.

Research output: Contribution to journalReview article

Nucleosomes
Genes
Eukaryota
Chromatin
Transcription Factors
56 Citations (Scopus)

Hepatitis c virus: Molecular biology & current therapeutic options

Sharma, S. D., Jan 1 2010, In : Indian Journal of Medical Research. 131, 1, p. 17-34 18 p.

Research output: Contribution to journalReview article

Hepatitis Viruses
Molecular biology
Viruses
Hepacivirus
Molecular Biology
96 Citations (Scopus)

How to Make a Living by Exhaling Methane

Ferry, J. G., Oct 13 2010, In : Annual Review of Microbiology. 64, p. 453-473 21 p.

Research output: Contribution to journalReview article

Exhalation
formic acid
Methane
Archaea
Enzymes
45 Citations (Scopus)

Mechanistic and functional versatility of radical SAM enzymes

Booker, S. J. & Grove, T. L., Jul 14 2010, In : F1000 Biology Reports. 2, 1, 52.

Research output: Contribution to journalReview article

S-Adenosylmethionine
Enzymes
Bioinformatics
Metabolites
Computational Biology