Biochemistry & Molecular Biology

  • United States

Research Output 1961 2020

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Review article
2010
7 Citations (Scopus)

Movers and shakers or anchored: Caenorhabditis elegans nuclei achieve it with KASH/SUN

Zhou, K. & Hanna-Rose, W., May 1 2010, In : Developmental Dynamics. 239, 5, p. 1352-1364 13 p.

Research output: Contribution to journalReview article

Caenorhabditis elegans
Nuclear Envelope
Cytoskeleton
Cell Division
Proteins
3 Citations (Scopus)

MultiPipMaker: A comparative alignment server for multiple DNA sequences

Elnitski, L., Burhans, R., Riemer, C., Hardison, R. C. & Miller, W., Jun 1 2010, In : Current Protocols in Bioinformatics. SUPPL. 30

Research output: Contribution to journalReview article

DNA sequences
Internet
Servers
Nucleotides
World Wide Web
128 Citations (Scopus)

Of proteins and RNA: The RNase P/MRP family

Esakova, O. A. & Krasilnikov, A. S., Jan 1 2010, In : RNA. 16, 9, p. 1725-1747 23 p.

Research output: Contribution to journalReview article

Ribonuclease P
RNA
Proteins
Enzymes
Ribonucleoproteins
87 Citations (Scopus)

Rad54, the motor of homologous recombination

Mazin, A. V., Mazina, O. M., Bugreev, D. V. & Rossi, M. J., Mar 2 2010, In : DNA Repair. 9, 3, p. 286-302 17 p.

Research output: Contribution to journalReview article

Homologous Recombination
DNA
Cruciform DNA
Repair
DNA Repair
84 Citations (Scopus)

Substrate activation by iron superoxo intermediates

van der Donk, W. A., Krebs, C. & Bollinger, Jr., J. M., Dec 1 2010, In : Current Opinion in Structural Biology. 20, 6, p. 673-683 11 p.

Research output: Contribution to journalReview article

Iron
Oxygenases
Superoxides
Hydrogen
Oxidoreductases
15 Citations (Scopus)

The bound iron-sulfur clusters of Type-I homodimeric reaction centers

Romberger, S. P. & Golbeck, J. H., Jun 1 2010, In : Photosynthesis research. 104, 2, p. 333-346 14 p.

Research output: Contribution to journalReview article

Sulfur
Photosynthetic Reaction Center Complex Proteins
Ferredoxins
sulfur
Iron
38 Citations (Scopus)

The chemical biology of methanogenesis

Ferry, J. G., Dec 1 2010, In : Planetary and Space Science. 58, 14-15, p. 1775-1783 9 p.

Research output: Contribution to journalReview article

methanogenesis
microorganisms
biology
acetates
acetate
9 Citations (Scopus)

The P3 domain of eukaryotic RNases P/MRP: Making a protein-rich RNA-based enzyme

Perederina, A. & Krasilnikov, A. S., Jan 1 2010, In : RNA Biology. 7, 5, p. 534-539 6 p.

Research output: Contribution to journalReview article

Ribonuclease P
RNA
Enzymes
Proteins
Catalytic RNA
47 Citations (Scopus)

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes

Kang, S., Mansfield, M. A., Park, B., Geiser, D. M., Ivors, K. L., Coffey, M. D., Grunwald, N. J., Martin, F. N., Lévesque, C. A. & Blair, J. E., Aug 1 2010, In : PHYTOPATHOLOGY. 100, 8, p. 732-737 6 p.

Research output: Contribution to journalReview article

Oomycetes
plant pathogenic fungi
pathogens
Phytophthora
diagnostic techniques
94 Citations (Scopus)

The γ class of carbonic anhydrases

Ferry, J. G., Feb 1 2010, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1804, 2, p. 374-381 8 p.

Research output: Contribution to journalReview article

Carbonic Anhydrases
Cams
Catalytic Domain
Metals
Archaea
102 Citations (Scopus)

Wiring photosystem I for direct solar hydrogen production

Lubner, C. E., Grimme, R., Bryant, D. A. & Golbeck, J. H., Jan 26 2010, In : Biochemistry. 49, 3, p. 404-414 11 p.

Research output: Contribution to journalReview article

Photosystem I Protein Complex
Electric wiring
Hydrogen production
Solar Energy
Hydrogen
2009
89 Citations (Scopus)

Anaerobic functionalization of unactivated C-H bonds

Booker, S. J., Feb 1 2009, In : Current Opinion in Chemical Biology. 13, 1, p. 58-73 16 p.

Research output: Contribution to journalReview article

Enzymes
Alkanes
Methylation
Oxygen
Surveying
28 Citations (Scopus)

Archaeal RNA polymerase

Hirata, A. & Murakami, K. S., Dec 1 2009, In : Current Opinion in Structural Biology. 19, 6, p. 724-731 8 p.

Research output: Contribution to journalReview article

Archaeal RNA
DNA-Directed RNA Polymerases
Eukaryota
General Transcription Factors
Archaea
155 Citations (Scopus)

A structural and functional perspective of alphavirus replication and assembly

Jose, J., Snyder, J. E. & Kuhn, R., Sep 23 2009, In : Future microbiology. 4, 7, p. 837-856 20 p.

Research output: Contribution to journalReview article

Alphavirus
Arthropods
Viruses
Alphavirus Infections
Ross River virus
59 Citations (Scopus)

A three-dimensional osteogenic tissue model for the study of metastatic tumor cell interactions with bone

Mastro, A. M. & Vogler, E. A., May 15 2009, In : Cancer Research. 69, 10, p. 4097-4100 4 p.

Research output: Contribution to journalReview article

Osteoblasts
Cell Communication
Bone and Bones
Bioreactors
Osteocytes
13 Citations (Scopus)
Photosystem I Protein Complex
Membrane Proteins
Thermodynamics
Sulfur
Iron
21 Citations (Scopus)

Compartmented neuron cultures for unit 26.4 directional infection by alpha herpesviruses

Curanović, D., Ch'ng, T. H., Szpara, M. & Enquist, L., Jun 24 2009, In : Current Protocols in Cell Biology. SUPPL. 43, p. 26.4.1-26.4.23

Research output: Contribution to journalReview article

Herpesviridae Infections
Axons
Neurons
Herpesviridae
Polytetrafluoroethylene
38 Citations (Scopus)

Dynamics: the missing link between structure and function of the viral RNA-dependent RNA polymerase?

Cameron, C. E., Moustafa, I. & Arnold, J. J., Dec 1 2009, In : Current Opinion in Structural Biology. 19, 6, p. 768-774 7 p.

Research output: Contribution to journalReview article

RNA Replicase
Viral RNA
Nucleotides
Nucleosides
Nucleic Acids
10 Citations (Scopus)

Freeze-quench 57Fe-Mössbauer spectroscopy: Trapping reactive intermediates

Krebs, C. & Bollinger, J. M., Nov 1 2009, In : Photosynthesis research. 102, 2, p. 295-304 10 p.

Research output: Contribution to journalReview article

trapping
spectroscopy
Spectrum Analysis
Iron
Spectroscopy
107 Citations (Scopus)

How eukaryotic genes are transcribed regulation of eukaroytic gene transcription B. J. Venters and B. F. Pugh

Venters, B. J. & Pugh, B. F., Nov 4 2009, In : Critical Reviews in Biochemistry and Molecular Biology. 44, 2-3, p. 117-141 25 p.

Research output: Contribution to journalReview article

RNA Polymerase II
Transcription
Gene expression
Chromatin
Genes
9 Citations (Scopus)

Methods for optimizing statistical analyses in pharmacogenomics research

Turner, S. D., Crawford, D. C. & Ritchie, M. D., Dec 1 2009, In : Expert Review of Clinical Pharmacology. 2, 5, p. 559-570 12 p.

Research output: Contribution to journalReview article

Pharmacogenetics
Phenotype
Genetic Research
Medical Genetics
Research
617 Citations (Scopus)

Nucleosome positioning and gene regulation: Advances through genomics

Jiang, C. & Pugh, B. F., Mar 1 2009, In : Nature Reviews Genetics. 10, 3, p. 161-172 12 p.

Research output: Contribution to journalReview article

Nucleosomes
Genomics
Genes
Genome
Chromatin Assembly and Disassembly
38 Citations (Scopus)

Planning the human variome project: The Spain report

Kaput, J., Cotton, R. G. H., Hardman, L., Watson, M., Aqeel, A. I. A., Al-Aama, J. Y., Al-Mulla, F., Alonso, S., Aretz, S., Auerbach, A. D., Bapat, B., Bernstein, I. T., Bhak, J., Bleoo, S. L., Blöcer, H., Brenner, S. E., Burn, J., Bustamante, M., Calzone, R., Cambon-Thomsen, A. & 82 others, Cargill, M., Carrera, P., Cavedon, L., Cho, Y. S., Chung, Y. J., Claustres, M., Cutting, G., Dalgleish, R., Dunnen, J. T. D., Díaz, C., Dobrowolski, S., Santos, M. R. N. D., Ekong, R., Flanagan, S. B., Flicek, P., Furukawa, Y., Genuardi, M., Ghang, H., Golubenko, M. V., Greenblatt, M. S., Hamosh, A., Hancock, J. M., Hardison, R., Harrison, T. M., Hoffmann, R., Horaitis, R., Howard, H. J., Barash, C. I., Izagirre, N., Jung, J., Kojima, T., Laradi, S., Lee, Y. S., Lee, J. Y., Gil-da-Silva-Lopes, V. L., Macrae, F. A., Maglott, D., Marafie, M. J., Marsh, S. G. E., Matsubara, Y., Messiaen, L. M., Möslein, G., Netea, M. G., Norton, M. L., Oefner, P. J., Oetting, W. S., O'Leary, J. C., De Ramirez, A. M. O., Paalman, M. H., Parboosingh, J., Patrinos, G. P., Perozzi, G., R.Phillips, I., Povey, S., Prasad, S., Qi, M., Quin, D. J., Ramesar, R. S., Richards, C. S., Savige, J., Scheible, D. G., Scott, R. J., Seminara, D., Shephard, E. A., Sijmons, R. H., Smith, T. D., Sobrido, M. J., Tanaka, T., Tavtigian, S. V., Taylor, G. R., Teague, J., Töpel, T., Ullman-Cullere, M., Utsunomiya, J., Van Kranen, H. J., Vihinen, M., Webb, E., Weber, T. K., Yeager, M., Yeom, Y. I., Yim, S. H. & Yoo, H. S., Apr 2009, In : Human mutation. 30, 4, p. 496-510 15 p.

Research output: Contribution to journalReview article

Human Genome
Spain
HapMap Project
Human Genome Project
Precision Medicine
71 Citations (Scopus)

Promoter proximal pausing on genes in metazoans

Gilmour, D. S., Jan 1 2009, In : Chromosoma. 118, 1, p. 1-10 10 p.

Research output: Contribution to journalReview article

Genetic Promoter Regions
Genes
Eukaryota
Drosophila
Genome
88 Citations (Scopus)

Protein-cofactor interactions in bioenergetic complexes: The role of the A1A and A1B phylloquinones in Photosystem I

Srinivasan, N. & Golbeck, J. H., Sep 1 2009, In : Biochimica et Biophysica Acta - Bioenergetics. 1787, 9, p. 1057-1088 32 p.

Research output: Contribution to journalReview article

Vitamin K 1
Photosystem I Protein Complex
Energy Metabolism
Quinones
Proteins
70 Citations (Scopus)

Regulation of translation initiation by RNA binding proteins

Babitzke, P. L., Baker, C. S. & Romeo, T., Oct 1 2009, In : Annual Review of Microbiology. 63, p. 27-44 18 p.

Research output: Contribution to journalReview article

RNA-Binding Proteins
Ribosomes
Proteins
RNA
Small Interfering RNA
45 Citations (Scopus)

The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak

Sato, S., Feltus, F. A., Iyer, P. & Tien, M., Apr 27 2009, In : Current Genetics. 55, 3, p. 273-286 14 p.

Research output: Contribution to journalReview article

Phanerochaete
Cellulases
Transcriptome
Fungi
acetylxylan esterase
89 Citations (Scopus)

The origins and impact of primate segmental duplications

Marques-Bonet, T., Girirajan, S. & Eichler, E. E., Oct 1 2009, In : Trends in Genetics. 25, 10, p. 443-454 12 p.

Research output: Contribution to journalReview article

Genomic Segmental Duplications
Primates
Genome
Hominidae
Human Genome
1 Citation (Scopus)

Why no vaccine for hepatitis C virus yet?

Sharma, S. D., Apr 1 2009, In : JK Science. 11, 2, p. 99-101 3 p.

Research output: Contribution to journalReview article

Hepacivirus
Vaccines
2008
46 Citations (Scopus)

A brilliant disguise for self RNA: 5′-End and internal modifications of primary transcripts suppress elements of innate immunity

Nallagatla, S. R., Toroney, R. & Bevilacqua, P. C., Jan 1 2008, In : RNA Biology. 5, 3

Research output: Contribution to journalReview article

Innate Immunity
RNA
Nucleosides
eIF-2 Kinase
Interferons
2 Citations (Scopus)

Back into the fold. Modernizing Croatian science and education

Primorac, D., Jul 1 2008, In : EMBO Reports. 9, 7, p. 596-599 4 p.

Research output: Contribution to journalReview article

International Cooperation
Croatia
Internet
Teaching
Education
77 Citations (Scopus)

Biochemical models for S-RNase-based self-incompatibility

Hua, Z. H., Fields, A. & Kao, T. H., Jul 2008, In : Molecular plant. 1, 4, p. 575-585 11 p.

Research output: Contribution to journalReview article

Pollen Tube
pollen tubes
Petunia integrifolia
Petunia
Solanaceae
96 Citations (Scopus)

Biological contexts for DNA charge transport chemistry

Merino, E. J., Boal, A. K. & Barton, J. K., Apr 1 2008, In : Current Opinion in Chemical Biology. 12, 2, p. 229-237 9 p.

Research output: Contribution to journalReview article

Charge transfer
DNA
DNA Repair
Mitochondria
Genome
153 Citations (Scopus)

Biology of trans-translation

Keiler, K. C., Oct 20 2008, In : Annual Review of Microbiology. 62, p. 133-151 19 p.

Research output: Contribution to journalReview article

Quality Control
Messenger RNA
Ribosomal Frameshifting
Bacteria
Ribonucleoproteins
16 Citations (Scopus)

Exploring functional genomics for drug target and therapeutics discovery in Plasmodia

Birkholtz, L., van Brummelen, A. C., Clark, K., Niemand, J., Maréchal, E., Llinas, M. & Louw, A. I., Jan 1 2008, In : Acta Tropica. 105, 2, p. 113-123 11 p.

Research output: Contribution to journalReview article

Plasmodium
Genomics
genomics
drugs
therapeutics
40 Citations (Scopus)

Formation and function of the manganese(iv)/iron(iii) cofactor in chlamydia trachomatis ribonucleotide reductase

Jiang, W., Yun, D., Saleh, L., Martin Bollinger, J. & Krebs, C., Dec 30 2008, In : Biochemistry. 47, 52, p. 13736-13744 9 p.

Research output: Contribution to journalReview article

Ribonucleotide Reductases
Chlamydia trachomatis
Manganese
Iron
Electrons
27 Citations (Scopus)

Gas chromatography

Dorman, F. L., Overton, E. B., Whiting, J. J., Cochran, J. W. & Gardea-Torresdey, J., Jun 15 2008, In : Analytical chemistry. 80, 12, p. 4487-4497 11 p.

Research output: Contribution to journalReview article

Gas chromatography
20 Citations (Scopus)

Plasmodium gene regulation: far more to factor in

Llinás, M., Deitsch, K. W. & Voss, T. S., Dec 1 2008, In : Trends in Parasitology. 24, 12, p. 551-556 6 p.

Research output: Contribution to journalReview article

Plasmodium
Antigenic Variation
Parasites
Inventions
Genes
28 Citations (Scopus)

Recombinant protein complex expression in E. coli

Selleck, W. & Tan, S., Dec 17 2008, In : Current Protocols in Protein Science. SUPPL. 52

Research output: Contribution to journalReview article

Recombinant Proteins
Escherichia coli
Plasmids
Sequence Deletion
Escherichia coli Proteins
117 Citations (Scopus)

Regulation by destruction: design of the σE envelope stress response

Ades, S. E., Dec 1 2008, In : Current Opinion in Microbiology. 11, 6, p. 535-540 6 p.

Research output: Contribution to journalReview article

Signal Transduction
Peptide Hydrolases
Periplasm
Proteolysis
Cytoplasm
71 Citations (Scopus)

The biochemical basis for structural diversity in the carotenoids of chlorophototrophic bacteria

Maresca, J. A., Graham, J. E. & Bryant, D. A., Aug 1 2008, In : Photosynthesis research. 97, 2, p. 121-140 20 p.

Research output: Contribution to journalReview article

Carotenoids
Bacteria
carotenoids
bacteria
Biosynthesis
169 Citations (Scopus)

The bone microenvironment in metastasis; what is special about bone?

Bussard, K. M., Gay, C. V. & Mastro, A. M., Mar 1 2008, In : Cancer and Metastasis Reviews. 27, 1, p. 41-55 15 p.

Research output: Contribution to journalReview article

Neoplasm Metastasis
Bone and Bones
Neoplasms
Bone Marrow
Osteoblasts
48 Citations (Scopus)
Ribonucleotide Reductases
Chlamydia trachomatis
Manganese
Protons
Iron
49 Citations (Scopus)

The β and γ classes of carbonic anhydrase

Zimmerman, S. A. & Ferry, J. G., Mar 1 2008, In : Current Pharmaceutical Design. 14, 7, p. 716-721 6 p.

Research output: Contribution to journalReview article

Carbonic Anhydrases
Bicarbonates
Photosynthesis
Carbon Cycle
Diatoms
2007
6 Citations (Scopus)

A model for the origin of protein synthesis as coreplicational scanning of nascent RNA

Yakhnin, A. V., Dec 1 2007, In : Origins of Life and Evolution of Biospheres. 37, 6, p. 523-536 14 p.

Research output: Contribution to journalReview article

ribonucleic acids
protein synthesis
translation (genetics)
peptides
RNA
160 Citations (Scopus)

Chlorophyll biosynthesis in bacteria: The origins of structural and functional diversity

Chew, A. G. M. & Bryant, D. A., Nov 14 2007, In : Annual Review of Microbiology. 61, p. 113-129 17 p.

Research output: Contribution to journalReview article

Chlorophyll
Bacteriochlorophylls
Carotenoids
Bacteria
Light
555 Citations (Scopus)

Colicin biology

Cascales, E., Buchanan, S. K., Duché, D., Kleanthous, C., Lloubès, R., Postle, K., Riley, M., Slatin, S. & Cavard, D., Mar 1 2007, In : Microbiology and Molecular Biology Reviews. 71, 1, p. 158-229 72 p.

Research output: Contribution to journalReview article

Colicins
Immunity
Escherichia coli
Periplasm
Proteins
24 Citations (Scopus)

Computational protein design promises to revolutionize protein engineering

Alvizo, O., Allen, B. D. & Mayo, S. L., Jan 1 2007, In : BioTechniques. 42, 1, p. 31-39 9 p.

Research output: Contribution to journalReview article

Protein Engineering
Proteins
Protein Array Analysis
Peptides
Earth (planet)
281 Citations (Scopus)

CsrB sRNA family: sequestration of RNA-binding regulatory proteins

Babitzke, P. & Romeo, T., Apr 1 2007, In : Current Opinion in Microbiology. 10, 2, p. 156-163 8 p.

Research output: Contribution to journalReview article

Untranslated RNA
RNA-Binding Proteins
Carbon
Carbon Cycle
Quorum Sensing
188 Citations (Scopus)

DNA Commission of the International Society for Forensic Genetics (ISFG): Recommendations regarding the role of forensic genetics for disaster victim identification (DVI)

Prinz, M., Carracedo, A., Mayr, W. R., Morling, N., Parsons, T. J., Sajantila, A., Scheithauer, R., Schmitter, H. & Schneider, P. M., Mar 1 2007, In : Forensic Science International: Genetics. 1, 1, p. 3-12 10 p.

Research output: Contribution to journalReview article

Disaster Victims
Forensic Genetics
DNA
Azores
Tsunamis