Biochemistry & Molecular Biology

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Research Output 1961 2020

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Review article
2003

A Novel Biosynthetic Pathway Providing Precursors for Fatty Acid Biosynthesis and Secondary Metabolite Formation in Myxobacteria

Weinert, E. E. & Jarvis, B. B., Oct 1 2003, In : Chemtracts. 16, 11, p. 680-683 4 p.

Research output: Contribution to journalReview article

Biosynthesis
Metabolites
Fatty Acids
Biosynthetic Pathways
345 Citations (Scopus)

Bacterial RNA polymerases: The wholo story

Murakami, K. S. & Darst, S. A., Feb 1 2003, In : Current Opinion in Structural Biology. 13, 1, p. 31-39 9 p.

Research output: Contribution to journalReview article

Bacterial RNA
DNA-Directed RNA Polymerases
Holoenzymes
47 Citations (Scopus)

Basal transcription factors

Reese, J. C., Jan 1 2003, In : Current Opinion in Genetics and Development. 13, 2, p. 114-118 5 p.

Research output: Contribution to journalReview article

RNA Polymerase II
Transcription Factors
1 Citation (Scopus)

Basic statistics.

Moore, J. H., Thornton, T. A. & Ritchie, M. D., Jan 1 2003, In : Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.]. Appendix 3

Research output: Contribution to journalReview article

Software Design
Software
Datasets
14 Citations (Scopus)

Breast cancer metastasis to bone: Evolving models and research challenges

Welch, D. R., Harms, J. F., Mastro, A. M., Gay, C. V. & Donahue, H. J., Mar 1 2003, In : Journal of Musculoskeletal Neuronal Interactions. 3, 1, p. 30-38 9 p.

Research output: Contribution to journalReview article

Osteonectin
Parathyroid Hormone-Related Protein
Osteolysis
Osteopontin
Osteoclasts
125 Citations (Scopus)

Chlorobium tepidum: Insights into the structure, physiology, and metabolism of a green sulfur bacterium derived from the complete genome sequence

Frigaard, N. U., Gomez Maqueo Chew, A., Li, H., Maresca, J. A. & Bryant, D. A., Dec 31 2003, In : Photosynthesis research. 78, 2, p. 93-117 25 p.

Research output: Contribution to journalReview article

Chlorobium
Chlorobium tepidum
Chlorobi
Bacteriochlorophylls
Biosynthetic Pathways
196 Citations (Scopus)

Comparative genomics

Hardison, R. C., Dec 1 2003, In : PLoS biology. 1, 2

Research output: Contribution to journalReview article

Genetic Databases
Molecular Evolution
Phylogeny
Genomics
Computational Biology
171 Citations (Scopus)

Cross-species sequence comparisons: a review of methods and available resources.

Frazer, K. A., Elnitski, L., Church, D. M., Dubchak, I. & Hardison, R. C., Jan 2003, In : Genome research. 13, 1, p. 1-12 12 p.

Research output: Contribution to journalReview article

DNA Sequence Analysis
Genome
16 Citations (Scopus)

Detection of gene duplications and block duplications in eukaryotic genomes

Li, W. H., Gu, Z., Cavalcanti, A. R. O. & Nekrutenko, A., Apr 30 2003, In : Journal of Structural and Functional Genomics. 3, 1-4, p. 27-34 8 p.

Research output: Contribution to journalReview article

Gene Duplication
Genes
Genome
Yeasts
Chromosomes
43 Citations (Scopus)

GALA, a database for genomic sequence alignments and annotations

Giardine, B., Elnitski, L., Riemer, C., Makalowska, I., Schwartz, S., Miller, W. & Hardison, R. C., Apr 1 2003, In : Genome research. 13, 4, p. 732-741 10 p.

Research output: Contribution to journalReview article

Sequence Alignment
Databases
Genes
CpG Islands
Globins
72 Citations (Scopus)

Maternal serum dioxin levels and birth outcomes in women of Seveso, Italy

Eskanazi, B., Mocarelli, P., Warner, M., Chee, W. Y., Gerthoux, P. M., Samuels, S., Needham, L. L. & Patterson, D. G., Jun 1 2003, In : Environmental health perspectives. 111, 7, p. 947-953 7 p.

Research output: Contribution to journalReview article

TCDD
Dioxins
dioxin
Italy
serum
145 Citations (Scopus)

Mechanistic considerations for general acid-base catalysis by RNA: Revisiting the mechanism of the hairpin ribozyme

Bevilacqua, P. C., Mar 4 2003, In : Biochemistry. 42, 8, p. 2259-2265 7 p.

Research output: Contribution to journalReview article

Catalysis
RNA
Catalytic RNA
Acids
Vanadates
272 Citations (Scopus)

Prediction of protein function from protein sequence and structure

Whisstock, J. C. & Lesk, A., Aug 1 2003, In : Quarterly Reviews of Biophysics. 36, 3, p. 307-340 34 p.

Research output: Contribution to journalReview article

Proteins
Genome
Genomics
Nucleic Acids
Genes
46 Citations (Scopus)

Specific quantification of human genomes from low copy number DNA samples in forensic and ancient DNA studies

Alonso, A., Martín, P., Albarrán, C., García, P., Primorac, D., García, O., Fernández de Simón, L., García-Hirschfeld, J., Sancho, M. & Fernández-Piqueras, J., Jun 1 2003, In : Croatian Medical Journal. 44, 3, p. 273-280 8 p.

Research output: Contribution to journalReview article

Human Genome
Mitochondrial DNA
Real-Time Polymerase Chain Reaction
DNA
Amelogenin
30 Citations (Scopus)
Photosystem I Protein Complex
Proteins
Ligands
Vitamin K 1
Polypeptides
57 Citations (Scopus)

The skeleton as a unique environment for breast cancer cells

Mastro, A. M., Gay, C. V. & Welch, D. R., May 7 2003, In : Clinical and Experimental Metastasis. 20, 3, p. 275-284 10 p.

Research output: Contribution to journalReview article

Skeleton
Breast Neoplasms
Bone and Bones
Bone Marrow
Neoplasms
2002
3 Citations (Scopus)

Battle for the bulge: Directing small molecules to DNA and RNA defects

Bevilacqua, P. C., Jan 1 2002, In : Chemistry and Biology. 9, 8, p. 854-855 2 p.

Research output: Contribution to journalReview article

RNA
Defects
Molecules
DNA
Nucleotides
25 Citations (Scopus)

Gas chromatography

Eiceman, G. A., Gardea-Torresdey, J., Overton, E., Carney, K. & Dorman, Jr., F. L., Jun 15 2002, In : Analytical chemistry. 74, 12, p. 2771-2780 10 p.

Research output: Contribution to journalReview article

Gas chromatography
Temperature
101 Citations (Scopus)

Immunologic effects of dioxin: New results from Seveso and comparison with other studies

Baccarelli, A., Mocarelli, P., Patterson, D. G., Bonzini, M., Pesatori, A. C., Caporaso, N. & Landi, M. T., Dec 1 2002, In : Environmental health perspectives. 110, 12, p. 1169-1173 5 p.

Research output: Contribution to journalReview article

Dioxins
Immunoglobulins
Accidents
Immunoglobulin G
dibenzodioxin
39 Citations (Scopus)

Measurement of p-nitrophenol in the urine of residents whose homes were contaminated with methyl parathion

Barr, D. B., Turner, W. E., DiPietro, E., McClure, P. C., Baker, S. E., Barr, J. R., Gehle, K., Grissom, R. E., Bravo, R., Driskell, W. J., Patterson, D. G., Hill, R. H., Needham, L. L., Pirkle, J. L. & Sampson, E. J., Dec 1 2002, In : Environmental Health Perspectives. 110, SUPPL. 6, p. 1085-1091 7 p.

Research output: Contribution to journalReview article

Methyl Parathion
urine
Urine
Poisons
Registries
1073 Citations (Scopus)

Order out of chaos: Assembly of ligand binding sites in heparan sulfate

Esko, J. D. & Selleck, S. B., Aug 1 2002, In : Annual Review of Biochemistry. 71, p. 435-471 37 p.

Research output: Contribution to journalReview article

Racemases and Epimerases
Uronic Acids
Biological Phenomena
Sulfotransferases
Glycosyltransferases
4 Citations (Scopus)

Osteogenesis imperfecta: A current overview of musculskeletal radiology and new genetic concepts

Antičević, D., Zergollern-Cupak, L., Janković, S., Potočki, K., Barišić, I., Huzjak, N., Bosnar, A., Andelinović, S., Ivkošić, A. & Primorac, D., Jun 1 2002, In : Acta Clinica Croatica. 41, 2 SEPARATE.1, p. 101-111 11 p.

Research output: Contribution to journalReview article

Genetic Phenomena
Osteogenesis Imperfecta
Radiology
Skeleton
Bone and Bones
452 Citations (Scopus)

Perovskites by design: A toolbox of solid-state reactions

Schaak, R. E. & Mallouk, T. E., May 1 2002, In : Chemistry of Materials. 14, 4, p. 1455-1471 17 p.

Research output: Contribution to journalReview article

Solid state reactions
Perovskite
Intercalation
Dehydration
Cations
69 Citations (Scopus)

Pleiotropic mechanisms of ribavirin antiviral activities

Hong, Z. & Cameron, C. E., Oct 16 2002, In : Progress in Drug Research. 59, p. 41-69 29 p.

Research output: Contribution to journalReview article

Ribavirin
Antiviral Agents
Viral RNA
Inosine Monophosphate
Viral Genome
165 Citations (Scopus)

Ribavirin's antiviral mechanism of action: Lethal mutagenesis?

Crotty, S., Cameron, C. E. & Andino, R., Mar 5 2002, In : Journal of Molecular Medicine. 80, 2, p. 86-95 10 p.

Research output: Contribution to journalReview article

Ribavirin
Mutagenesis
Antiviral Agents
RNA Viruses
Virus Diseases
63 Citations (Scopus)

Transcription attenuation

Gollnick, P. & Babitzke, P., Sep 13 2002, In : Biochimica et Biophysica Acta - Gene Structure and Expression. 1577, 2, p. 240-250 11 p.

Research output: Contribution to journalReview article

Transcription
Bacteria
Gram-Positive Bacteria
RNA
Operon
2001
279 Citations (Scopus)

Glypicans: Proteoglycans with a surprise

Filmus, J. & Selleck, S. B., Sep 3 2001, In : Journal of Clinical Investigation. 108, 4, p. 497-501 5 p.

Research output: Contribution to journalReview article

Neoplasm Proteins
Body Constitution
Insect Genes
Glypicans
Gigantism
81 Citations (Scopus)

Iron-sulfur clusters in type I reaction centers

Vassiliev, I. R., Antonkine, M. L. & Golbeck, J. H., Oct 30 2001, In : Biochimica et Biophysica Acta - Bioenergetics. 1507, 1-3, p. 139-160 22 p.

Research output: Contribution to journalReview article

Sulfur
Iron
Chlorobi
Chlorophyll Binding Proteins
Electrons
2 Citations (Scopus)

Koštane displazije - Specifična zdravstvena skrb djece s hondrodisplazijama

Translated title of the contribution: Skeletal dysplasias specific health care for children with chondrodysplasiasLigutić, I., Barišić, I., Antičević, D., Vrdoljak, J. & Primorac, D., Apr 18 2001, In : Paediatria Croatica. 45, 1, p. 19-26 8 p.

Research output: Contribution to journalReview article

Enchondromatosis
Developmental Bone Disease
Achondroplasia
Delivery of Health Care
Bone Development
48 Citations (Scopus)

Osteogenesis imperfecta at the beginning of bone and joint decade

Primorac, D., Rowe, D. W., Mottes, M., Barišić, I., Antičević, D., Mirandola, S., Gomez Lira, M., Kalajzić, I., Kušec, V. & Glorieux, F. H., Sep 4 2001, In : Croatian Medical Journal. 42, 4, p. 393-415 23 p.

Research output: Contribution to journalReview article

Osteogenesis Imperfecta
Joints
Bone and Bones
Collagen Type I
Mutation
123 Citations (Scopus)

Promoter targeting of chromatin-modifying complexes.

Hassan, A. H., Neely, K. E., Vignali, M., Reese, J. C. & Workman, J. L., Jan 1 2001, In : Frontiers in bioscience : a journal and virtual library. 6

Research output: Contribution to journalReview article

Chromatin
Histone Acetyltransferases
Genes
Histone Deacetylases
Histones
75 Citations (Scopus)

Radical mechanisms of S-adenosylmethionine-dependent enzymes

Frey, P. A. & Booker, S. J., Jan 1 2001, In : Advances in Protein Chemistry. 58, p. 1-45 45 p.

Research output: Contribution to journalReview article

S-Adenosylmethionine
Enzymes
44 Citations (Scopus)

Spectrin: The ghost in the machine

Thomas, G. H., Feb 15 2001, In : BioEssays. 23, 2, p. 152-160 9 p.

Research output: Contribution to journalReview article

spectrin
Spectrin
Body Patterning
scaffolding proteins
crosslinking
860 Citations (Scopus)

Stochastic sensors inspired by biology

Bayley, H. & Cremer, P. S., Sep 13 2001, In : Nature. 413, 6852, p. 226-230 5 p.

Research output: Contribution to journalReview article

Biological Warfare Agents
Membranes
Biosensing Techniques
Ion Channels
Technology
16 Citations (Scopus)

Stretching the mold

Mallouk, T. E., Jan 19 2001, In : Science. 291, 5503, p. 443-444 2 p.

Research output: Contribution to journalReview article

Fungi

Structural bases of RNA polymerase functions

Murakami, K. & Ishihama, A., Jan 1 2001, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 46, 11 Suppl, p. 1608-1617 10 p.

Research output: Contribution to journalReview article

Protein Conformation
DNA-Directed RNA Polymerases
Structure-Activity Relationship
Transcription Factors
Binding Sites
75 Citations (Scopus)

The mechanism of action of ribavirin: Lethal mutagenesis of RNA virus genomes mediated by the viral RNA-dependent RNA polymerase

Cameron, C. E. & Castro, C., Jan 1 2001, In : Current Opinion in Infectious Diseases. 14, 6, p. 757-764 8 p.

Research output: Contribution to journalReview article

RNA Replicase
Ribavirin
RNA Viruses
Viral RNA
Mutagenesis
2000
32 Citations (Scopus)

Application of forensic DNA testing in the legal system

Primorac, D., Schanfield, M. S. & Primorac, D., Mar 1 2000, In : Croatian Medical Journal. 41, 1, p. 32-46 15 p.

Research output: Contribution to journalReview article

DNA
Forensic Sciences
Technology
Miniaturization
Forensic Medicine
144 Citations (Scopus)

Control of gene expression through regulation of the TATA-binding protein

Pugh, B. F., Sep 5 2000, In : Gene. 255, 1, p. 1-14 14 p.

Research output: Contribution to journalReview article

TATA-Box Binding Protein
Gene Expression Regulation
Holoenzymes
RNA Polymerase II
DNA
5 Citations (Scopus)

Getting signals crossed in C. elegans

Hanna-Rose, W. & Han, M., Jan 1 2000, In : Current Opinion in Genetics and Development. 10, 5, p. 523-528 6 p.

Research output: Contribution to journalReview article

Caenorhabditis elegans
159 Citations (Scopus)

Molecular recognition and response in pollen and pistil interactions

McCubbin, A. G. & Kao, T. H., Dec 1 2000, In : Annual Review of Cell and Developmental Biology. 16, p. 333-364 32 p.

Research output: Contribution to journalReview article

Pollen
Genes
Signal Transduction
Papaveraceae
Pollen Tube
438 Citations (Scopus)

Prokaryotic carbonic anhydrases

Smith, K. S. & Ferry, J. G., Oct 1 2000, In : FEMS Microbiology Reviews. 24, 4, p. 335-366 32 p.

Research output: Contribution to journalReview article

Carbonic Anhydrases
Enzymes
Archaea
Genes
Bacteria
206 Citations (Scopus)

Proteoglycans and pattern formation: Sugar biochemistry meets developmental genetics

Selleck, S. B., May 1 2000, In : Trends in Genetics. 16, 5, p. 206-212 7 p.

Research output: Contribution to journalReview article

Proteoglycans
Biochemistry
Membrane Proteins
Multiple Hereditary Exostoses
Body Size
1999
54 Citations (Scopus)
Flavodoxin
Photosystem I Protein Complex
Ferredoxins
ferredoxins
photosystem I
40 Citations (Scopus)

The emerging complexity of self-incompatibility (S-) loci

McCubbin, A. G. & Kao, T., Jan 1 1999, In : Sexual Plant Reproduction. 12, 1, p. 1-5 5 p.

Research output: Contribution to journalReview article

Scrophulariaceae
Rosaceae
Solanaceae
Brassicaceae
loci
1998
160 Citations (Scopus)

An atlas of serpin conformations

Whisstock, J., Skinner, R. & Lesk, A., Jan 1 1998, In : Trends in Biochemical Sciences. 23, 2, p. 63-67 5 p.

Research output: Contribution to journalReview article

Serpins
Atlases
Conformations
Chymotrypsin
Serine Proteases
30 Citations (Scopus)

Comprehensive, comprehensible, distributed and intelligent databases: Current status

Frishman, D., Heumann, K., Lesk, A. & Mewes, H. W., Oct 20 1998, In : Bioinformatics. 14, 7, p. 551-561 11 p.

Research output: Contribution to journalReview article

Computer Communication Networks
Molecular biology
Molecular Biology
Databases
Foster Home Care
4 Citations (Scopus)

SV40 as a putative human commensal.

Levine, A., Butel, J., Dörries, K., Goedert, J., Frisque, R. J., Garcea, R., Morris, A., O'Neill, F. & Shah, K., Dec 22 1998, In : Developments in Biological Standardization. 94, p. 245-269 25 p.

Research output: Contribution to journalReview article

Drug Contamination
Viral Vaccines
Viral Antibodies
Simian virus 40
Symbiosis
1997
11 Citations (Scopus)

Molecular and biochemical bases of gametophytic self-incompatibility in solanaceae

Kao, T. H. & McCubbin, A. G., Jan 1 1997, In : Plant Physiology and Biochemistry. 35, 3, p. 171-176 6 p.

Research output: Contribution to journalReview article

Solanaceae
Alleles
alleles
Proteins
Pollen
69 Citations (Scopus)

Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel

Babitzke, P. L., Oct 23 1997, In : Molecular Microbiology. 26, 1, p. 1-9 9 p.

Research output: Contribution to journalReview article

Operon
Bacillus subtilis
Tryptophan
RNA Folding
Crystallography