• United States

Research Output

2020

A Deep Learning approach to Photoacoustic Wavefront Localization in Deep-Tissue Medium

Johnstonbaugh, K., Agrawal, S., Durairaj, D. A., Fadden, C., Dangi, A., Karri, S. P. K. & Kothapalli, S. R., Jan 1 2020, (Accepted/In press) In : IEEE transactions on ultrasonics, ferroelectrics, and frequency control.

Research output: Contribution to journalArticle

6 Scopus citations

Alternating magnetic field mediated release of fluorophores from magnetic nanoparticles by hysteretic heating

Casey, J. S., Arrizabalaga, J. H., Abu-Laban, M., Becca, J. C., Rose, B. J., Strickland, K. T., Bursavich, J. B., McCann, J. S., Pacheco, C. N., Jessen, L., Attaluri, A. & Hayes, D. J., Jul 1 2020, In : Journal of Colloid And Interface Science. 571, p. 348-355 8 p.

Research output: Contribution to journalArticle

A modular approach to neonatal whole-brain photoacoustic imaging

Dangi, A., Roy, K., Agrawal, S., Chen, H., Ashok, A., Wible, C., Osman, M., Pratap, R. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124057. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antibacterial effects of low-temperature plasma generated by atmospheric-pressure plasma jet are mediated by reactive oxygen species

Nicol, M. K. J., Brubaker, T. R., Honish, B. J., Simmons, A. N., Kazemi, A., Geissel, M. A., Whalen, C. T., Siedlecki, C. A., Bilén, S. G., Knecht, S. D. & Kirimanjeswara, G. S., Dec 1 2020, In : Scientific reports. 10, 1, 3066.

Research output: Contribution to journalArticle

Open Access

A Photoacoustic Imaging Device Using Piezoelectric Micromachined Ultrasound Transducers (PMUTs)

Dangi, A., Cheng, C. Y., Agrawal, S., Tiwari, S., Datta, G. R., Benoit, R. R., Pratap, R., Trolier-Mckinstry, S. & Kothapalli, S. R., Apr 2020, In : IEEE transactions on ultrasonics, ferroelectrics, and frequency control. 67, 4, p. 801-809 9 p., 8915732.

Research output: Contribution to journalArticle

Automatic Brain Extraction for Rodent MRI Images

Liu, Y., Unsal, H. S., Tao, Y. & Zhang, N., Jan 1 2020, (Accepted/In press) In : Neuroinformatics.

Research output: Contribution to journalArticle

Computational modeling of the Food and Drug Administration’s benchmark centrifugal blood pump

Good, B. C. & Manning, K. B., Jan 1 2020, (Accepted/In press) In : Artificial organs.

Research output: Contribution to journalArticle

Depth-dependent abnormal cortical myelination in first-episode treatment-naïve schizophrenia

Wei, W., Zhang, Y., Li, Y., Meng, Y., Li, M., Wang, Q., Deng, W., Ma, X., Palaniyappan, L., Zhang, N. & Li, T., Jul 1 2020, In : Human Brain Mapping. 41, 10, p. 2782-2793 12 p.

Research output: Contribution to journalArticle

Open Access

Detection of bacterial infection via a fidget spinner

Li, H., Torab, P. & Wong, P. K., Jun 1 2020, In : Nature Biomedical Engineering. 4, 6, p. 577-578 2 p.

Research output: Contribution to journalArticle

Differentiation of Adipose Tissue–Derived CD34+/CD31− Cells into Endothelial Cells In Vitro

Forghani, A., Koduru, S. V., Chen, C., Leberfinger, A. N., Ravnic, D. J. & Hayes, D. J., Mar 1 2020, In : Regenerative Engineering and Translational Medicine. 6, 1, p. 101-110 10 p.

Research output: Contribution to journalArticle

Discovery of antitumor lectins from rainforest tree root transcriptomes

Lawanprasert, A., Guinan, C. A., Langford, E. A., Hawkins, C. E., Sloand, J. N., Fescemyer, H. W., Aronson, M. R., Halle, J. A., Marden, J. H. & Medina, S. H., Jan 1 2020, In : PloS one. 15, 2, e0229467.

Research output: Contribution to journalArticle

Open Access

Dynactin p150 promotes processive motility of DDB complexes by minimizing diffusional behavior of dynein

Feng, Q., Gicking, A. M. & Hancock, W. O., Apr 1 2020, In : Molecular biology of the cell. 31, 8, p. 782-792 11 p.

Research output: Contribution to journalArticle

Emergence of self-organized multivortex states in flocks of active rollers

Han, K., Kokot, G., Tovkach, O., Glatz, A., Aranson, I. S. & Snezhko, A., May 5 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 18, p. 9706-9711 6 p.

Research output: Contribution to journalArticle

Evaluation of centrifugal blood pumps in term of hemodynamic performance using simulated neonatal and pediatric ECMO circuits

Wang, S., Moroi, M. K., Kunselman, A. R., Myers, J. L. & Ündar, A., Jan 1 2020, In : Artificial organs. 44, 1, p. 16-27 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Exogenous Signaling Molecules Released from Aptamer-Functionalized Hydrogels Promote the Survival of Mesenchymal Stem Cell Spheroids

Zhao, N., Coyne, J., Abune, L., Shi, P., Lian, X. L., Zhang, G. & Wang, Y., Jan 1 2020, (Accepted/In press) In : ACS Applied Materials and Interfaces.

Research output: Contribution to journalArticle

Fluorescent indicators for continuous and lineage-specific reporting of cell-cycle phases in human pluripotent stem cells

Chang, Y., Hellwarth, P. B., Randolph, L. N., Sun, Y., Xing, Y., Zhu, W., Lian, X. L. & Bao, X., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2177-2186 10 p.

Research output: Contribution to journalArticle

Functional, molecular and structural imaging using LED-based photoacoustic and ultrasound imaging system.

Agrawal, S., Singh, M. K. A., Yang, X., Albahrani, H., Dangi, A. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 112405A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

GABAergic Abnormalities Associated with Sensorimotor Cortico-striatal Community Structural Deficits in ErbB4 Knockout Mice and First-Episode Treatment-Naïve Patients with Schizophrenia

Zhang, C., Ni, P., Liu, Y., Tian, Y., Wei, J., Xiang, B., Zhao, L., Li, X., Ma, X., Deng, W., Guo, W., Ni, R., Zhang, Y., Wang, Q., Huang, H., Zhang, N. & Li, T., Feb 1 2020, In : Neuroscience Bulletin. 36, 2, p. 97-109 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Global brain signal in awake rats

Ma, Y., Ma, Z., Liang, Z., Neuberger, T. & Zhang, N., Jan 1 2020, In : Brain Structure and Function. 225, 1, p. 227-240 14 p.

Research output: Contribution to journalArticle

Heart regeneration with human pluripotent stem cells: Prospects and challenges

Jiang, Y. & Lian, X. L., Mar 2020, In : Bioactive Materials. 5, 1, p. 74-81 8 p.

Research output: Contribution to journalReview article

Open Access
1 Scopus citations

High-affinity mutant Interleukin-13 targeted CAR T cells enhance delivery of clickable biodegradable fluorescent nanoparticles to glioblastoma

Kim, G. B., Aragon-Sanabria, V., Randolph, L., Jiang, H., Reynolds, J. A., Webb, B. S., Madhankumar, A., Lian, X., Connor, J. R., Yang, J. & Dong, C., Sep 2020, In : Bioactive Materials. 5, 3, p. 624-635 12 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Kinesin-2 from C. reinhardtii Is an Atypically Fast and Auto-inhibited Motor that Is Activated by Heterotrimerization for Intraflagellar Transport

Sonar, P., Youyen, W., Cleetus, A., Wisanpitayakorn, P., Mousavi, S. I., Stepp, W. L., Hancock, W. O., Tüzel, E. & Ökten, Z., Mar 23 2020, In : Current Biology. 30, 6, p. 1160-1166.e5

Research output: Contribution to journalArticle

2 Scopus citations

Large-Eddy Simulations of Flow in the FDA Benchmark Nozzle Geometry to Predict Hemolysis

Tobin, N. & Manning, K. B., Jun 1 2020, In : Cardiovascular Engineering and Technology. 11, 3, p. 254-267 14 p.

Research output: Contribution to journalArticle

Low-cost photoacoustic computed tomography system using light-emitting-diodes

Agrawal, S., Yang, X., Albahrani, H., Fadden, C., Dangi, A., Singh, M. K. A. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124058. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnesium oxide-crosslinked low-swelling citrate-based mussel-inspired tissue adhesives

Lu, X., Shi, S., Li, H., Gerhard, E., Lu, Z., Tan, X., Li, W., Rahn, K. M., Xie, D., Xu, G., Zou, F., Bai, X., Guo, J. & Yang, J., Feb 2020, In : Biomaterials. 232, 119719.

Research output: Contribution to journalArticle

3 Scopus citations

Metformin Enhances Autophagy and Normalizes Mitochondrial Function to Alleviate Aging-Associated Inflammation

Bharath, L. P., Agrawal, M., McCambridge, G., Nicholas, D. A., Hasturk, H., Liu, J., Jiang, K., Liu, R., Guo, Z., Deeney, J., Apovian, C. M., Snyder-Cappione, J., Hawk, G. S., Fleeman, R. M., Pihl, R. M. F., Thompson, K., Belkina, A. C., Cui, L., Proctor, E. A., Kern, P. A. & 1 others, Nikolajczyk, B. S., Jan 1 2020, (Accepted/In press) In : Cell Metabolism.

Research output: Contribution to journalArticle

Open Access

Multi-scale Predictions of Drug Resistance Epidemiology Identify Design Principles for Rational Drug Design

Leighow, S. M., Liu, C., Inam, H., Zhao, B. & Pritchard, J. R., Mar 24 2020, In : Cell Reports. 30, 12, p. 3951-3963.e4

Research output: Contribution to journalArticle

Open Access

Organizing bacterial vortex lattices by periodic obstacle arrays

Reinken, H., Nishiguchi, D., Heidenreich, S., Sokolov, A., Bär, M., Klapp, S. H. L. & Aranson, I. S., Dec 1 2020, In : Communications Physics. 3, 1, 76.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Photoacoustic imaging capabilities of light emitting diodes (LED) and laser sources: A comparison study

Agrawal, S., Singh, M. K. A., Yang, X., Albahrani, H., Dangi, A. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124059. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polar jets of swimming bacteria condensed by a patterned liquid crystal

Turiv, T., Koizumi, R., Thijssen, K., Genkin, M. M., Yu, H., Peng, C., Wei, Q. H., Yeomans, J. M., Aranson, I. S., Doostmohammadi, A. & Lavrentovich, O. D., Apr 1 2020, In : Nature Physics. 16, 4, p. 481-487 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Rapid fabrication of precise high-throughput filters from membrane protein nanosheets

Tu, Y. M., Song, W., Ren, T., Shen, Y. X., Chowdhury, R., Rajapaksha, P., Culp, T. E., Samineni, L., Lang, C., Thokkadam, A., Carson, D., Dai, Y., Mukthar, A., Zhang, M., Parshin, A., Sloand, J. N., Medina, S. H., Grzelakowski, M., Bhattacharya, D., Phillip, W. A. & 4 others, Gomez, E. D., Hickey, R. J., Wei, Y. & Kumar, M., Mar 1 2020, In : Nature Materials. 19, 3, p. 347-354 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Sequence-Specific Recognition of HIV-1 DNA with Solid-State CRISPR-Cas12a-Assisted Nanopores (SCAN)

Nouri, R., Jiang, Y., Lian, X. L. & Guan, W., May 22 2020, In : ACS Sensors. 5, 5, p. 1273-1280 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

The 2020 motile active matter roadmap

Gompper, G., Winkler, R. G., Speck, T., Solon, A., Nardini, C., Peruani, F., Löwen, H., Golestanian, R., Kaupp, U. B., Alvarez, L., Ki rboe, T., Lauga, E., Poon, W. C. K., Desimone, A., Muiños-Landin, S., Fischer, A., Söker, N. A., Cichos, F., Kapral, R., Gaspard, P. & 17 others, Ripoll, M., Sagues, F., Doostmohammadi, A., Yeomans, J. M., Aranson, I. S., Bechinger, C., Stark, H., Hemelrijk, C. K., Nedelec, F. O. J., Sarkar, T., Aryaksama, T., Lacroix, M., Duclos, G., Yashunsky, V., Silberzan, P., Arroyo, M. & Kale, S., May 8 2020, In : Journal of Physics Condensed Matter. 32, 19, 193001.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

The primary mechanism of cytotoxicity of the chemotherapeutic agent CX-5461 is topoisomerase II poisoning

Bruno, P. M., Lu, M., Dennis, K. A., Inam, H., Moore, C. J., Sheehe, J., Elledge, S. J., Hemann, M. T. & Pritchard, J. R., Feb 25 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 8, p. 4053-4060 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Thermoacoustic combined tomography of abusive head trauma

Fadden, C., Thamburaj, K., Dias, M. & Kothapalli, S. R., Jan 1 2020, Medical Imaging 2020: Ultrasonic Imaging and Tomography. Byram, B. C. & Ruiter, N. V. (eds.). SPIE, 1131903. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11319).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thermo-responsive fluorescent nanoparticles for multimodal imaging and treatment of cancers

Pandey, N., Menon, J. U., Takahashi, M., Hsieh, J. T., Yang, J., Nguyen, K. T. & Wadajkar, A. S., Jan 1 2020, In : Nanotheranostics. 4, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Trends and advancements in shoulder biomechanics research

Morrow, M. M., Cutti, A. G. & Vidt, M. E., Jan 1 2020, (Accepted/In press) In : Journal of Electromyography and Kinesiology. 102409.

Research output: Contribution to journalArticle

Ultra-accurate Duplex Sequencing for the assessment of pretreatment ABL1 kinase domain mutations in Ph+ ALL

Short, N. J., Kantarjian, H., Kanagal-Shamanna, R., Sasaki, K., Ravandi, F., Cortes, J., Konopleva, M., Issa, G. C., Kornblau, S. M., Garcia-Manero, G., Garris, R., Higgins, J., Pratt, G., Williams, L. N., Valentine, C. C., Rivera, V. M., Pritchard, J., Salk, J. J., Radich, J. & Jabbour, E., May 1 2020, In : Blood Cancer Journal. 10, 5, 61.

Research output: Contribution to journalArticle

Open Access

Ultrasound-Guided Cytosolic Protein Delivery via Transient Fluorous Masks

Sloand, J. N., Nguyen, T. T., Zinck, S. A., Cook, E. C., Zimudzi, T. J., Showalter, S. A., Glick, A. B., Simon, J. C. & Medina, S. H., Apr 28 2020, In : ACS nano. 14, 4, p. 4061-4073 13 p.

Research output: Contribution to journalArticle

Unsupervised deep learning approach for photoacoustic spectral unmixing

Durairaj, D. A., Agrawal, S., Johnstonbaugh, K., Chen, H., Karri, S. P. K. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 112403H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Welcome to the 16th International Conference on Pediatric Mechanical Circulatory Support Systems and Pediatric Cardiopulmonary Perfusion

Thangappan, K., Barnes, A., Lorts, A., Morales, D. L. S. & Ündar, A., Apr 1 2020, In : Artificial organs. 44, 4, p. 355-360 6 p.

Research output: Contribution to journalEditorial

2019

A Comprehensive Study of Ultrasound Transducer Characteristics in Microscopic Ultrasound Neuromodulation

Gougheri, H. S., Dangi, A., Kothapalli, S. R. & Kiani, M., Oct 2019, In : IEEE Transactions on Biomedical Circuits and Systems. 13, 5, p. 835-847 13 p., 8734697.

Research output: Contribution to journalArticle

1 Scopus citations

Adaptable microfluidic system for single-cell pathogen classification and antimicrobial susceptibility testing

Li, H., Torab, P., Mach, K. E., Surrette, C., England, M. R., Craft, D. W., Thomas, N. J., Liao, J. C., Puleo, C. & Wong, P. K., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10270-10279 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

Age-Related Reduction in Cortical Thickness in First-Episode Treatment-Naïve Patients with Schizophrenia

Lin, Y., Li, M., Zhou, Y., Deng, W., Ma, X., Wang, Q., Guo, W., Li, Y., Jiang, L., Hu, X., Zhang, N. & Li, T., Aug 1 2019, In : Neuroscience Bulletin. 35, 4, p. 688-696 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

All-night functional magnetic resonance imaging sleep studies

Moehlman, T. M., de Zwart, J. A., Chappel-Farley, M. G., Liu, X., McClain, I. B., Chang, C., Mandelkow, H., Özbay, P. S., Johnson, N. L., Bieber, R. E., Fernandez, K. A., King, K. A., Zalewski, C. K., Brewer, C. C., van Gelderen, P., Duyn, J. H. & Picchioni, D., Mar 15 2019, In : Journal of Neuroscience Methods. 316, p. 83-98 16 p.

Research output: Contribution to journalArticle

3 Scopus citations

A Multiwell Microfluidic Device for Analyzing and Screening Nonhormonal Contraceptive Agents

Li, H., Garner, T., Diaz, F. & Wong, P. K., Jul 12 2019, In : Small. 15, 28, 1901910.

Research output: Contribution to journalArticle

Aptamer-Functionalized Fibrin Hydrogel Improves Vascular Endothelial Growth Factor Release Kinetics and Enhances Angiogenesis and Osteogenesis in Critically Sized Cranial Defects

Juhl, O., Zhao, N., Merife, A. B., Cohen, D., Friedman, M., Zhang, Y., Schwartz, Z., Wang, Y. & Donahue, H., Nov 11 2019, In : ACS Biomaterials Science and Engineering. 5, 11, p. 6152-6160 9 p.

Research output: Contribution to journalArticle