• United States

Research Output

2020

A Deep Learning approach to Photoacoustic Wavefront Localization in Deep-Tissue Medium

Johnstonbaugh, K., Agrawal, S., Durairaj, D. A., Fadden, C., Dangi, A., Karri, S. P. K. & Kothapalli, S. R., 2020, (Accepted/In press) In : IEEE transactions on ultrasonics, ferroelectrics, and frequency control.

Research output: Contribution to journalArticle

6 Scopus citations

Alternating magnetic field mediated release of fluorophores from magnetic nanoparticles by hysteretic heating

Casey, J. S., Arrizabalaga, J. H., Abu-Laban, M., Becca, J. C., Rose, B. J., Strickland, K. T., Bursavich, J. B., McCann, J. S., Pacheco, C. N., Jessen, L., Attaluri, A. & Hayes, D. J., Jul 1 2020, In : Journal of Colloid And Interface Science. 571, p. 348-355 8 p.

Research output: Contribution to journalArticle

A modular approach to neonatal whole-brain photoacoustic imaging

Dangi, A., Roy, K., Agrawal, S., Chen, H., Ashok, A., Wible, C., Osman, M., Pratap, R. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124057. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An open database of resting-state fMRI in awake rats

Liu, Y., Perez, P. D., Ma, Z., Ma, Z., Dopfel, D., Cramer, S., Tu, W. & Zhang, N., Oct 15 2020, In : NeuroImage. 220, 117094.

Research output: Contribution to journalArticle

Open Access

Antibacterial effects of low-temperature plasma generated by atmospheric-pressure plasma jet are mediated by reactive oxygen species

Nicol, M. K. J., Brubaker, T. R., Honish, B. J., Simmons, A. N., Kazemi, A., Geissel, M. A., Whalen, C. T., Siedlecki, C. A., Bilén, S. G., Knecht, S. D. & Kirimanjeswara, G. S., Dec 1 2020, In : Scientific reports. 10, 1, 3066.

Research output: Contribution to journalArticle

Open Access

Antimicrobial Scaffolds

Simonson, A. W., Aronson, M. R., Medina, S. H. & Medina, S. H., Jun 2020, In : Molecules. 25, 12, 2751.

Research output: Contribution to journalReview article

Open Access

A Photoacoustic Imaging Device Using Piezoelectric Micromachined Ultrasound Transducers (PMUTs)

Dangi, A., Cheng, C. Y., Agrawal, S., Tiwari, S., Datta, G. R., Benoit, R. R., Pratap, R., Trolier-Mckinstry, S. & Kothapalli, S. R., Apr 2020, In : IEEE transactions on ultrasonics, ferroelectrics, and frequency control. 67, 4, p. 801-809 9 p., 8915732.

Research output: Contribution to journalArticle

Automatic Brain Extraction for Rodent MRI Images

Liu, Y., Unsal, H. S., Tao, Y. & Zhang, N., Jun 1 2020, In : Neuroinformatics. 18, 3, p. 395-406 12 p.

Research output: Contribution to journalArticle

Citrate-Based Tannin-Bridged Bone Composites for Lumbar Fusion

Guo, J., Tian, X., Xie, D., Rahn, K., Gerhard, E., Kuzma, M. L., Zhou, D., Dong, C., Bai, X., Lu, Z. & Yang, J., Jul 1 2020, In : Advanced Functional Materials. 30, 27, 2002438.

Research output: Contribution to journalArticle

Coagulopathy signature precedes and predicts severity of end-organ heat stroke pathology in a mouse model

Proctor, E. A., Dineen, S. M., Van Nostrand, S. C., Kuhn, M. K., Barrett, C. D., Brubaker, D. K., Yaffe, M. B., Lauffenburger, D. A. & Leon, L. R., 2020, (Accepted/In press) In : Journal of Thrombosis and Haemostasis.

Research output: Contribution to journalArticle

Open Access

Computational modeling of the Food and Drug Administration’s benchmark centrifugal blood pump

Good, B. C. & Manning, K. B., Jul 1 2020, In : Artificial organs. 44, 7, p. E263-E276

Research output: Contribution to journalArticle

Decellularized Adipose Tissue: Biochemical Composition, in vivo Analysis and Potential Clinical Applications

Mohiuddin, O. A., Campbell, B., Poche, J. N., Thomas-Porch, C., Hayes, D. A., Bunnell, B. A. & Gimble, J. M., 2020, Advances in Experimental Medicine and Biology. Springer, p. 57-70 14 p. (Advances in Experimental Medicine and Biology; vol. 1212).

Research output: Chapter in Book/Report/Conference proceedingChapter

Depth-dependent abnormal cortical myelination in first-episode treatment-naïve schizophrenia

Wei, W., Zhang, Y., Li, Y., Meng, Y., Li, M., Wang, Q., Deng, W., Ma, X., Palaniyappan, L., Zhang, N. & Li, T., Jul 1 2020, In : Human Brain Mapping. 41, 10, p. 2782-2793 12 p.

Research output: Contribution to journalArticle

Open Access

Detection of bacterial infection via a fidget spinner

Li, H., Torab, P. & Wong, P. K., Jun 1 2020, In : Nature Biomedical Engineering. 4, 6, p. 577-578 2 p.

Research output: Contribution to journalArticle

Differentiation of Adipose Tissue–Derived CD34+/CD31− Cells into Endothelial Cells In Vitro

Forghani, A., Koduru, S. V., Chen, C., Leberfinger, A. N., Ravnic, D. J. & Hayes, D. J., Mar 1 2020, In : Regenerative Engineering and Translational Medicine. 6, 1, p. 101-110 10 p.

Research output: Contribution to journalArticle

Discovery of antitumor lectins from rainforest tree root transcriptomes

Lawanprasert, A., Guinan, C. A., Langford, E. A., Hawkins, C. E., Sloand, J. N., Fescemyer, H. W., Aronson, M. R., Halle, J. A., Marden, J. H. & Medina, S. H., Jan 1 2020, In : PloS one. 15, 2, e0229467.

Research output: Contribution to journalArticle

Open Access

Dynactin p150 promotes processive motility of DDB complexes by minimizing diffusional behavior of dynein

Feng, Q., Gicking, A. M. & Hancock, W. O., Apr 1 2020, In : Molecular biology of the cell. 31, 8, p. 782-792 11 p.

Research output: Contribution to journalArticle

Elastomeric polyurethane porous film functionalized with gastrodin for peripheral nerve regeneration

Li, Q., Li, L., Yu, M., Zheng, M., Li, Y., Yang, J., Dai, M., Zhong, L., Sun, L. & Lu, D., Aug 1 2020, In : Journal of Biomedical Materials Research - Part A. 108, 8, p. 1713-1725 13 p.

Research output: Contribution to journalArticle

Emergence of self-organized multivortex states in flocks of active rollers

Han, K., Kokot, G., Tovkach, O., Glatz, A., Aranson, I. S. & Snezhko, A., May 5 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 18, p. 9706-9711 6 p.

Research output: Contribution to journalArticle

Evaluation of centrifugal blood pumps in term of hemodynamic performance using simulated neonatal and pediatric ECMO circuits

Wang, S., Moroi, M. K., Kunselman, A. R., Myers, J. L. & Ündar, A., Jan 1 2020, In : Artificial organs. 44, 1, p. 16-27 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Exogenous Signaling Molecules Released from Aptamer-Functionalized Hydrogels Promote the Survival of Mesenchymal Stem Cell Spheroids

Zhao, N., Coyne, J., Abune, L., Shi, P., Lian, X. L., Zhang, G. & Wang, Y., Jan 1 2020, (Accepted/In press) In : ACS Applied Materials and Interfaces.

Research output: Contribution to journalArticle

Ex vivo models of musculoskeletal tissues

Szczesny, S. E., Jul 3 2020, In : Connective Tissue Research. 61, 3-4, p. 245-247 3 p.

Research output: Contribution to journalEditorial

Open Access

Fluorescent indicators for continuous and lineage-specific reporting of cell-cycle phases in human pluripotent stem cells

Chang, Y., Hellwarth, P. B., Randolph, L. N., Sun, Y., Xing, Y., Zhu, W., Lian, X. L. & Bao, X., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2177-2186 10 p.

Research output: Contribution to journalArticle

Functional, molecular and structural imaging using LED-based photoacoustic and ultrasound imaging system.

Agrawal, S., Singh, M. K. A., Yang, X., Albahrani, H., Dangi, A. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 112405A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

GABAergic Abnormalities Associated with Sensorimotor Cortico-striatal Community Structural Deficits in ErbB4 Knockout Mice and First-Episode Treatment-Naïve Patients with Schizophrenia

Zhang, C., Ni, P., Liu, Y., Tian, Y., Wei, J., Xiang, B., Zhao, L., Li, X., Ma, X., Deng, W., Guo, W., Ni, R., Zhang, Y., Wang, Q., Huang, H., Zhang, N. & Li, T., Feb 1 2020, In : Neuroscience Bulletin. 36, 2, p. 97-109 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Global brain signal in awake rats

Ma, Y., Ma, Z., Liang, Z., Neuberger, T. & Zhang, N., Jan 1 2020, In : Brain Structure and Function. 225, 1, p. 227-240 14 p.

Research output: Contribution to journalArticle

Heart regeneration with human pluripotent stem cells: Prospects and challenges

Jiang, Y. & Lian, X. L., Mar 2020, In : Bioactive Materials. 5, 1, p. 74-81 8 p.

Research output: Contribution to journalReview article

Open Access
1 Scopus citations

High-affinity mutant Interleukin-13 targeted CAR T cells enhance delivery of clickable biodegradable fluorescent nanoparticles to glioblastoma

Kim, G. B., Aragon-Sanabria, V., Randolph, L., Jiang, H., Reynolds, J. A., Webb, B. S., Madhankumar, A., Lian, X., Connor, J. R., Yang, J. & Dong, C., Sep 2020, In : Bioactive Materials. 5, 3, p. 624-635 12 p.

Research output: Contribution to journalArticle

Open Access

In Situ Synthesis of an Aptamer-Based Polyvalent Antibody Mimic on the Cell Surface for Enhanced Interactions between Immune and Cancer Cells

Shi, P., Wang, X., Davis, B., Coyne, J., Dong, C., Reynolds, J. & Wang, Y., Jul 13 2020, In : Angewandte Chemie - International Edition. 59, 29, p. 11892-11897 6 p.

Research output: Contribution to journalArticle

3 Scopus citations

Kinesin-2 from C. reinhardtii Is an Atypically Fast and Auto-inhibited Motor that Is Activated by Heterotrimerization for Intraflagellar Transport

Sonar, P., Youyen, W., Cleetus, A., Wisanpitayakorn, P., Mousavi, S. I., Stepp, W. L., Hancock, W. O., Tüzel, E. & Ökten, Z., Mar 23 2020, In : Current Biology. 30, 6, p. 1160-1166.e5

Research output: Contribution to journalArticle

2 Scopus citations

Large-Eddy Simulations of Flow in the FDA Benchmark Nozzle Geometry to Predict Hemolysis

Tobin, N. & Manning, K. B., Jun 1 2020, In : Cardiovascular Engineering and Technology. 11, 3, p. 254-267 14 p.

Research output: Contribution to journalArticle

Low-cost photoacoustic computed tomography system using light-emitting-diodes

Agrawal, S., Yang, X., Albahrani, H., Fadden, C., Dangi, A., Singh, M. K. A. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124058. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnesium oxide-crosslinked low-swelling citrate-based mussel-inspired tissue adhesives

Lu, X., Shi, S., Li, H., Gerhard, E., Lu, Z., Tan, X., Li, W., Rahn, K. M., Xie, D., Xu, G., Zou, F., Bai, X., Guo, J. & Yang, J., Feb 2020, In : Biomaterials. 232, 119719.

Research output: Contribution to journalArticle

3 Scopus citations

Metformin Enhances Autophagy and Normalizes Mitochondrial Function to Alleviate Aging-Associated Inflammation

Bharath, L. P., Agrawal, M., McCambridge, G., Nicholas, D. A., Hasturk, H., Liu, J., Jiang, K., Liu, R., Guo, Z., Deeney, J., Apovian, C. M., Snyder-Cappione, J., Hawk, G. S., Fleeman, R. M., Pihl, R. M. F., Thompson, K., Belkina, A. C., Cui, L., Proctor, E. A., Kern, P. A. & 1 others, Nikolajczyk, B. S., Jul 7 2020, In : Cell Metabolism. 32, 1, p. 44-55.e6

Research output: Contribution to journalArticle

Open Access

Multi-scale Predictions of Drug Resistance Epidemiology Identify Design Principles for Rational Drug Design

Leighow, S. M., Liu, C., Inam, H., Zhao, B. & Pritchard, J. R., Mar 24 2020, In : Cell Reports. 30, 12, p. 3951-3963.e4

Research output: Contribution to journalArticle

Open Access

Organizing bacterial vortex lattices by periodic obstacle arrays

Reinken, H., Nishiguchi, D., Heidenreich, S., Sokolov, A., Bär, M., Klapp, S. H. L. & Aranson, I. S., Dec 1 2020, In : Communications Physics. 3, 1, 76.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Photoacoustic imaging capabilities of light emitting diodes (LED) and laser sources: A comparison study

Agrawal, S., Singh, M. K. A., Yang, X., Albahrani, H., Dangi, A. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124059. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polar jets of swimming bacteria condensed by a patterned liquid crystal

Turiv, T., Koizumi, R., Thijssen, K., Genkin, M. M., Yu, H., Peng, C., Wei, Q. H., Yeomans, J. M., Aranson, I. S., Doostmohammadi, A. & Lavrentovich, O. D., Apr 1 2020, In : Nature Physics. 16, 4, p. 481-487 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Rapid fabrication of precise high-throughput filters from membrane protein nanosheets

Tu, Y. M., Song, W., Ren, T., Shen, Y. X., Chowdhury, R., Rajapaksha, P., Culp, T. E., Samineni, L., Lang, C., Thokkadam, A., Carson, D., Dai, Y., Mukthar, A., Zhang, M., Parshin, A., Sloand, J. N., Medina, S. H., Grzelakowski, M., Bhattacharya, D., Phillip, W. A. & 4 others, Gomez, E. D., Hickey, R. J., Wei, Y. & Kumar, M., Mar 1 2020, In : Nature Materials. 19, 3, p. 347-354 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Re-engineering Antimicrobial Peptides into Oncolytics Targeting Drug-Resistant Ovarian Cancers

Aronson, M. R., Dahl, E. S., Halle, J. A., Simonson, A. W., Gogal, R. A., Glick, A. B., Aird, K. M. & Medina, S. H., 2020, (Accepted/In press) In : Cellular and Molecular Bioengineering.

Research output: Contribution to journalArticle

Rodent models of post-traumatic stress disorder: behavioral assessment

Verbitsky, A., Dopfel, D. & Zhang, N., Dec 1 2020, In : Translational psychiatry. 10, 1, 132.

Research output: Contribution to journalReview article

Open Access

Sequence-Specific Recognition of HIV-1 DNA with Solid-State CRISPR-Cas12a-Assisted Nanopores (SCAN)

Nouri, R., Jiang, Y., Lian, X. L. & Guan, W., May 22 2020, In : ACS Sensors. 5, 5, p. 1273-1280 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

SLIPS-lab-a bioinspired bioanalysis system for metabolic evaluation of urinary stone disease

Li1, H., Shkolyar2, E., Wang3, J., Wang3, J., Conti2, S., Conti2, S., Pao5, A. C., Pao5, A. C., Liao2, J. C., Liao2, J. C., Wong1, T. S., Wong1, T. S., Wong1, T. S., Wong1, T. S., Wong1, P. K., Wong1, P. K. & Wong1, P. K., May 2020, In : Science Advances. 6, 21, EABA8535.

Research output: Contribution to journalArticle

Open Access

The 2020 motile active matter roadmap

Gompper, G., Winkler, R. G., Speck, T., Solon, A., Nardini, C., Peruani, F., Löwen, H., Golestanian, R., Kaupp, U. B., Alvarez, L., Ki rboe, T., Lauga, E., Poon, W. C. K., Desimone, A., Muiños-Landin, S., Fischer, A., Söker, N. A., Cichos, F., Kapral, R., Gaspard, P. & 17 others, Ripoll, M., Sagues, F., Doostmohammadi, A., Yeomans, J. M., Aranson, I. S., Bechinger, C., Stark, H., Hemelrijk, C. K., Nedelec, F. O. J., Sarkar, T., Aryaksama, T., Lacroix, M., Duclos, G., Yashunsky, V., Silberzan, P., Arroyo, M. & Kale, S., May 8 2020, In : Journal of Physics Condensed Matter. 32, 19, 193001.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations