• United States

Research Output 1974 2020

17 Citations (Scopus)

Computational approaches to understanding protein aggregation in neurodegeneration

Redler, R. L., Shirvanyants, D., Dagliyan, O., Ding, F., Kim, D. N., Kota, P., Proctor, E. A., Ramachandran, S., Tandon, A. & Dokholyan, N. V., Apr 2014, In : Journal of Molecular Cell Biology. 6, 2, p. 104-115 12 p.

Research output: Contribution to journalReview article

Proteins
Poisons
Amyotrophic Lateral Sclerosis
Information Systems
Neurodegenerative Diseases
17 Citations (Scopus)

Computational fluid dynamics design and analysis of a passively suspended tesla pump left ventricular assist device

Medvitz, R. B., Boger, D. A., Izraelev, V., Rosenberg, G. & Paterson, E. G., May 1 2011, In : Artificial organs. 35, 5, p. 522-533 12 p.

Research output: Contribution to journalArticle

Left ventricular assist devices
Heart-Assist Devices
Hydrodynamics
Computational fluid dynamics
Pumps
6 Citations (Scopus)

Computational Modeling of Neonatal Cardiopulmonary Bypass Hemodynamics With Full Circle of Willis Anatomy

Piskin, S., Ündar, A. & Pekkan, K., Oct 2015, In : Artificial organs. 39, 10, p. E164-E175

Research output: Contribution to journalArticle

Circle of Willis
Hemodynamics
Arches
Cardiopulmonary Bypass
Anatomy
5 Citations (Scopus)
Vena Cava Filters
Inferior Vena Cava
Embolism
Trapping
Filter
3 Citations (Scopus)

Computational translation of genomic responses from experimental model systems to humans

Brubaker, D. K., Proctor, E. A., Haigis, K. M. & Lauffenburger, D. A., Jan 1 2019, In : PLoS computational biology. 15, 1, e1006286.

Research output: Contribution to journalArticle

translation (genetics)
Genomics
Mouse
genomics
Theoretical Models

Computer assisted photoacoustic imaging guided device for safer percutaneous needle operations

Zhang, J., Agrawal, S., Dangi, A., Frings, N. & Kothapalli, S-R., Jan 1 2019, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1087866. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10878).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
needles
Needles
Blood vessels
Imaging techniques
374 Citations (Scopus)

Concentration dependence of the collective dynamics of swimming bacteria

Sokolov, A., Aranson, I. S., Kessler, J. O. & Goldstein, R. E., Apr 11 2007, In : Physical Review Letters. 98, 15, 158102.

Research output: Contribution to journalArticle

bacteria
locomotives
viscous fluids
microorganisms
thin films
1 Citation (Scopus)

Confinement and substrate topography control cell migration in a 3D computational model

Winkler, B., Aranson, I. S. & Ziebert, F., Dec 1 2019, In : Communications Physics. 2, 1, 82.

Research output: Contribution to journalArticle

Open Access
topography
cells
locomotion
pathology
metastasis
9 Citations (Scopus)

Conformational variability of the intracellular domain of Drosophila Notch and its interaction with Suppressor of Hairless

Kelly, D., Lake, R. J., Walz, T. & Artavanis-Tsakonas, S., Jun 5 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 23, p. 9591-9596 6 p.

Research output: Contribution to journalArticle

Open Access
Notch Receptors
Intracellular Membranes
Divalent Cations
Drosophila
Signal Transduction

Constrained Gaussian process with application in tissue-engineering scaffold biodegradation

Zeng, L., Deng, X. & Yang, J., May 4 2018, In : IISE Transactions. 50, 5, p. 431-447 17 p.

Research output: Contribution to journalArticle

Scaffolds (biology)
Biodegradation
Tissue engineering
Scaffolds
Fabrication
7 Citations (Scopus)

Constrained hierarchical modeling of degradation data in tissue-engineered scaffold fabrication

Zeng, L., Deng, X. & Yang, J., Jan 2 2016, In : IIE Transactions (Institute of Industrial Engineers). 48, 1, p. 16-33 18 p.

Research output: Contribution to journalArticle

Fabrication
Degradation
Scaffolds
Tissue Scaffolds
Parameter estimation
105 Citations (Scopus)

Construction and validation of nano gold tripods for molecular imaging of living subjects

Cheng, K., Kothapalli, S. R., Liu, H., Koh, A. L., Jokerst, J. V., Jiang, H., Yang, M., Li, J., Levi, J., Wu, J. C., Gambhir, S. S. & Cheng, Z., Mar 5 2014, In : Journal of the American Chemical Society. 136, 9, p. 3560-3571 12 p.

Research output: Contribution to journalArticle

Molecular imaging
Molecular Imaging
Photoacoustic effect
Gold
Imaging techniques
38 Citations (Scopus)

Construction of a high-performance magnetic enzyme nanosystem for rapid tryptic digestion

Cheng, G. & Zheng, S. Y., Nov 6 2014, In : Scientific reports. 4, 6947.

Research output: Contribution to journalArticle

Digestion
Enzymes
Proteolysis
Dromaiidae
Proteins

Construction of graphene-based enzyme system for rapid photo-assisted proteolysis

Cheng, G., Hao, S. J. & Zheng, S., Aug 5 2015, 2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015. Institute of Electrical and Electronics Engineers Inc., p. 1374-1377 4 p. 7181188. (2015 Transducers - 2015 18th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteolysis
Graphene
enzymes
Nanoreactors
graphene
3 Citations (Scopus)

Construction of versatile multilayered composite nanoparticles from a customized nanogel template

Zhang, J., Jia, J., Kim, J. P., Yang, F., Wang, X., Shen, H., Xu, S., Yang, J. & Wu, D., Mar 2018, In : Bioactive Materials. 3, 1, p. 87-96 10 p.

Research output: Contribution to journalArticle

Nanoparticles
Composite materials
Periosteum
Oncology
Orthopedics
2 Citations (Scopus)

Contact activation by the intrinsic pathway of blood plasma coagulation

Yan, Y., Xu, L. C., Vogler, E. A. & Siedlecki, C. A., Jan 1 2018, Hemocompatibility of Biomaterials for Clinical Applications: Blood-Biomaterials Interactions. Elsevier Inc., p. 3-28 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Blood Coagulation
Enzyme Precursors
Biocompatible Materials
Fibrin
High Molecular Weight Kininogens
179 Citations (Scopus)

Contact activation of blood-plasma coagulation

Vogler, E. A. & Siedlecki, C. A., Apr 1 2009, In : Biomaterials. 30, 10, p. 1857-1869 13 p.

Research output: Contribution to journalArticle

Blood Coagulation
Coagulation
Adsorption
Blood
Chemical activation

Continuity and affine fiber kinematics in biaxial tension of the supraspinatus tendon

Szczesny, S., Peloquin, J., Ilkhani-Pour, S., Cortes Correales, D. H., Kadlowec, J. A., Soslowsky, L. J. & Elliott, D. M., Dec 1 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 659-660 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tendons
Kinematics
Fibers
2 Citations (Scopus)

Continuous and Pulsatile Pediatric Ventricular Assist Device Hemodynamics with a Viscoelastic Blood Model

Good, B. C., Deutsch, S. & Manning, K. B., Mar 1 2016, In : Cardiovascular Engineering and Technology. 7, 1, p. 23-43 21 p.

Research output: Contribution to journalArticle

Pediatrics
Heart-Assist Devices
Hemodynamics
Blood
Shear stress
29 Citations (Scopus)

Continuous cytometric bead processing within a microfluidic device for bead based sensing platforms

Yang, S., Ündar, A. & Zahn, J. D., Jan 1 2007, In : Lab on a Chip. 7, 5, p. 588-595 8 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Fluorescein
Processing
Streptavidin
13 Citations (Scopus)

Continuous Monitoring of Inflammation Biomarkers During Simulated Cardiopulmonary Bypass Using a Microfluidic Immunoassay Device-A Pilot Study

Sasso, L. A., Aran, K., Guan, Y., Ündar, A. & Zahn, J. D., Jan 1 2013, In : Artificial organs. 37, 1, p. E9-E17

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Biomarkers
Cardiopulmonary Bypass
Immunoassay
Microfluidics

Continuous particle cross over in microfluidic channels for continuous biosensing

Yang, S., Undar, A. & Zahn, J. D., Jan 1 2006, Proceedings of 2006 ASME International Mechanical Engineering Congress and Exposition, IMECE2006 - Fluids Engineering Division. American Society of Mechanical Engineers (ASME), (American Society of Mechanical Engineers, Fluids Engineering Division (Publication) FED).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gaussian distribution
Flow structure
Microfluidics
Pixels
Fluids
1 Citation (Scopus)
Granular Flow
Granular Media
Avalanche
avalanches
Continuum
94 Citations (Scopus)

Continuum description of avalanches in granular media

Aranson, I. S. & Tsimring, L. S., Aug 1 2001, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 64, 2 I, p. 203011-203014 4 p.

Research output: Contribution to journalArticle

Granular Media
Avalanche
avalanches
Continuum
continuums
162 Citations (Scopus)

Continuum field description of crack propagation

Aranson, I. S., Kalatsky, V. A. & Vinokur, V. M., Jul 3 2000, In : Physical Review Letters. 85, 1, p. 118-121 4 p.

Research output: Contribution to journalArticle

crack propagation
continuums
elastic deformation
crack initiation
phenomenology

Continuum Modeling of Granular Flow and Structure Formation

Aranson, I. S. & Tsimring, L. S., Jun 6 2005, The Physics of Granular Media. wiley, p. 141-164 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

continuum modeling
avalanches
Couette flow
stress tensors
slip
14 Citations (Scopus)

Continuum modeling of myxobacteria clustering

Harvey, C. W., Alber, M., Tsimring, L. S. & Aranson, I. S., Mar 1 2013, In : New Journal of Physics. 15, 035029.

Research output: Contribution to journalArticle

continuum modeling
gliding
bacteria
rods
hydrodynamics
45 Citations (Scopus)

Continuum theory of axial segregation in a long rotating drum

Aranson, I. S., Tsimring, L. S. & Vinokur, V. M., Jan 1 1999, In : Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60, 2, p. 1975-1987 13 p.

Research output: Contribution to journalArticle

drums
Segregation
Rotating
Continuum
continuums
113 Citations (Scopus)
Granular Flow
Continuum
continuums
drums
avalanches
25 Citations (Scopus)

Contributions of contact activation pathways of coagulation factor XII in plasma

Chatterjee, K., Guo, Z., Vogler, E. A. & Siedlecki, C. A., Jul 1 2009, In : Journal of Biomedical Materials Research - Part A. 90, 1, p. 27-34 8 p.

Research output: Contribution to journalArticle

Factor XII
Coagulation
Chemical activation
Prekallikrein
Plasmas
25 Citations (Scopus)

Controlled dynamics of interfaces in a vibrated granular layer

Aranson, I. S., Blair, D., Kwok, W. K., Karapetrov, G., Welp, U., Crabtree, G. W., Vinokur, V. M. & Tsimring, L. S., Jan 1 1999, In : Physical Review Letters. 82, 4, p. 731-734 4 p.

Research output: Contribution to journalArticle

granular materials
harmonics
excitation
43 Citations (Scopus)

Controlled release of ethacrynic acid from poly(lactide-co-glycolide) films for glaucoma treatment

Wang, Y., Challa, P., Epstein, D. L. & Yuan, F., Aug 1 2004, In : Biomaterials. 25, 18, p. 4279-4285 7 p.

Research output: Contribution to journalArticle

Ethacrynic Acid
Polyglactin 910
Glaucoma
Acids
Therapeutics
148 Citations (Scopus)

Controlling spatiotemporal chaos

Aronson, I., Levine, H. & Tsimring, L., Jan 1 1994, In : Physical Review Letters. 72, 16, p. 2561-2564 4 p.

Research output: Contribution to journalArticle

chaos
Landau-Ginzburg equations
defects
stabilization
3 Citations (Scopus)

Controversy over the benefits of pulsatile perfusion (multiple letters) [1]

Ündar, A., Herreros, J., Berjano, E. J., Más, P., Padrós, C., Sales-Nebot, L., Vlaanderen, W., Díaz, P., Páramo, J. A., Rábago, G. & Mercé, S., Jun 1 2004, In : International Journal of Artificial Organs. 27, 6, p. 509-512 4 p.

Research output: Contribution to journalLetter

Pulsatile Flow
Pulsatile flow
Extracorporeal Circulation
Centrifugation
Blood pressure
10 Citations (Scopus)

Coordinated mechanosensitivity of membrane rafts and focal adhesions

Fuentes, D. E. & Butler, P. J., Jun 1 2012, In : Cellular and Molecular Bioengineering. 5, 2, p. 143-154 12 p.

Research output: Contribution to journalArticle

Focal Adhesions
Adhesion
Membrane
Talin
Membranes
56 Citations (Scopus)

Core instability and spatiotemporal intermittency of spiral waves in oscillatory media

Aronson, I., Kramer, L. & Weber, A., Jan 1 1994, In : Physical Review Letters. 72, 15, p. 2316-2319 4 p.

Research output: Contribution to journalArticle

intermittency
Landau-Ginzburg equations

Correcting errors in the BRCA1 warning system

Liang, Y., Dearnaley, W. J., Alden, N. A., Solares, M. J., Gilmore, B. L., Pridham, K. J., Varano, C., Sheng, Z., Alli, E. & Kelly, D., Jan 1 2019, In : DNA Repair. 73, p. 120-128 9 p.

Research output: Contribution to journalArticle

BRCA1 Protein
Alarm systems
Repair
Biochemical Phenomena
Cells

Correction: Oncogenic KRAS confers chemoresistance by upregulating Nrf2 (Cancer Research (2014) 74 (7430-7441) DOI: 10.1158/0008-5472.CAN-14-1439)

Tao, S., Wang, S., Moghaddam, S. J., Ooi, A., Chapman, E., Wong, P. K. & Zhang, D. D., Mar 1 2019, In : Cancer Research. 79, 5, 1 p.

Research output: Contribution to journalComment/debate

Open Access
Western Blotting
Research
Neoplasms
Emotions

Correction: Thermal unfolding pathway of PHD2 catalytic domain in three different PHD2 species: Computational approaches (PLoS ONE)

Hadi-Alijanvand, H., Proctor, E. A., Goliaei, B., Dokholyan, N. & Moosavi-Movahedi, A. A., Apr 22 2013, In : PloS one. 8, 4

Research output: Contribution to journalComment/debate

Hot Temperature
Biomedical engineering
Formability
Stem cells

Correlating leaflet design and closing dynamics with turbulent flows near bileaflet mechanical heart valves

Herbertson, L. H., Deutsch, S. & Manning, K. B., Dec 1 2009, Proceedings of the ASME Summer Bioengineering Conference, SBC2008. PART B ed. p. 1091-1092 2 p. (Proceedings of the ASME Summer Bioengineering Conference, SBC2008; no. PART B).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Heart Valves
Turbulent flow
8 Citations (Scopus)

Correlation between cerebral-renal near-infrared spectroscopy and ipsilateral renal perfusion parameters as clinical outcome predictors after open heart surgery in neonates and infants

Örmeci, T., Alkan-Bozkaya, T., Özyüksel, A., Ersoy, C., Ündar, A., Akçevin, A. & Türkoğlu, H., Jan 1 2015, In : Artificial organs. 39, 1, p. 53-58 6 p.

Research output: Contribution to journalArticle

Near infrared spectroscopy
Near-Infrared Spectroscopy
Surgery
Thoracic Surgery
Ultrasonography

Correlation between decomposed modes from carotid and wrist arteries and its application for coronary heart disease

Sun, R. & Dong, C., Dec 1 2010, Proceedings - 2010 3rd International Conference on Biomedical Engineering and Informatics, BMEI 2010. p. 828-832 5 p. 5639931. (Proceedings - 2010 3rd International Conference on Biomedical Engineering and Informatics, BMEI 2010; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Wrist
Carotid Arteries
Coronary Disease
Pulse
Surgery
8 Citations (Scopus)
Microcirculation
Hemodynamics
Microvessels
Pericardium
Plasma Cells
49 Citations (Scopus)

Correlation of in vivo clot deposition with the flow characteristics in the 50 cc Penn State Artificial Heart: A preliminary study

Hochareon, P., Manning, K. B., Fontaine, A. A., Tarbell, J. M. & Deutsch, S., Nov 1 2004, In : ASAIO Journal. 50, 6, p. 537-542 6 p.

Research output: Contribution to journalArticle

Artificial heart
Artificial Heart
Rheology
Shear deformation
Thrombosis
25 Citations (Scopus)

Correlation properties of collective motion in bacterial suspensions

Ryan, S. D., Sokolov, A., Berlyand, L. & Aranson, I. S., Oct 1 2013, In : New Journal of Physics. 15, 105021.

Research output: Contribution to journalArticle

bacteria
emerging
hydrodynamics
dipoles
collisions
12 Citations (Scopus)

Cortical inhibition deficits in recent onset PTSD after a single prolonged trauma exposure

Qi, S., Mu, Y., Liu, K., Zhang, J., Huan, Y., Tan, Q., Shi, M., Wang, Q., Chen, Y., Wang, H., Wang, H., Zhang, N., Zhang, X., Xiong, L. & Yin, H., Oct 1 2013, In : NeuroImage: Clinical. 3, p. 226-233 8 p.

Research output: Contribution to journalArticle

Post-Traumatic Stress Disorders
Wounds and Injuries
Hippocampus
Gyrus Cinguli
Frontal Lobe
11 Citations (Scopus)

Coupled flow-structure-biochemistry simulations of dynamic systems of blood cells using an adaptive surface tracking method

Hoskins, M. H., Kunz, R. F., Bistline, J. E. & Dong, C., Jul 1 2009, In : Journal of Fluids and Structures. 25, 5, p. 936-953 18 p.

Research output: Contribution to journalArticle

Biochemistry
Flow structure
Dynamical systems
Blood
Cells

CREATION OF SELF-STRUCTURES HIERARCHY OF INSTABILITIES AND BIFURCATIONS.

Aronson, I., Gaponov-Grekhov, A. V. & Rabinovich, M. I., 1986, In : Bulletin of the Academy of Sciences of the U.S.S.R. Physical series. 51, 6, p. 87-96 10 p.

Research output: Contribution to journalArticle

hierarchies
Nucleation
nucleation
maintenance
9 Citations (Scopus)

Crimped Nanofibrous Biomaterials Mimic Microstructure and Mechanics of Native Tissue and Alter Strain Transfer to Cells

Szczesny, S. E., Driscoll, T. P., Tseng, H. Y., Liu, P. C., Heo, S. J., Mauck, R. L. & Chao, P. H. G., Nov 13 2017, In : ACS Biomaterials Science and Engineering. 3, 11, p. 2869-2876 8 p.

Research output: Contribution to journalArticle

Biocompatible Materials
Biomaterials
Mechanics
Tissue
Microstructure