Research Output 1963 2020

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2019

CryoEM reconstruction approaches to resolve asymmetric features

Goetschius, D. J., Lee, H. & Hafenstein, S., 2019, Advances in Virus Research. Rey, F. A. (ed.). Academic Press Inc., p. 73-91 19 p. (Advances in Virus Research; vol. 105).

Research output: Chapter in Book/Report/Conference proceedingChapter

Viruses
Capsid
Life Cycle Stages
Genome
Proteins

Engineering allostery into proteins

Gorman, S. D., D’Amico, R. N., Winston, D. S. & Boehr, D. D., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 359-384 26 p. (Advances in Experimental Medicine and Biology; vol. 1163).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
Allosteric Regulation
Light
Biotechnology
Ligands

HIV–HBV and HIV–HCV coinfection and liver cancer development

Hu, J., Liu, K. & Luo, J., Jan 1 2019, Cancer Treatment and Research. Springer International Publishing, p. 231-250 20 p. (Cancer Treatment and Research; vol. 177).

Research output: Chapter in Book/Report/Conference proceedingChapter

Liver Neoplasms
Coinfection
Hepatitis B virus
HIV
Hepacivirus

Human papillomavirus infection and cervical cancer in HIV+ women

Du, P., Jan 1 2019, Cancer Treatment and Research. Springer International Publishing, p. 105-129 25 p. (Cancer Treatment and Research; vol. 177).

Research output: Chapter in Book/Report/Conference proceedingChapter

Papillomavirus Infections
Uterine Cervical Neoplasms
HIV
Incidence
Early Detection of Cancer
2018

Chapter 4: Directed differentiation of human pluripotent stem cells for therapeutic applications

Randolph, L. N., Witmer, E. B. & Lian, X., Jan 1 2018, Frontiers in Nanobiomedical Research. World Scientific Publishing Co. Pte Ltd, p. 75-100 26 p. (Frontiers in Nanobiomedical Research; vol. 10).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pluripotent Stem Cells
Stem cells
Cell Lineage
Therapeutics
Intercellular Signaling Peptides and Proteins

Chemical Tools for Studying the Impact of cis/trans Prolyl Isomerization on Signaling: A Case Study on RNA Polymerase II Phosphatase Activity and Specificity

Burkholder, N. T., Medellin, B., Irani, S., Matthews, W., Showalter, S. A. & Zhang, Y. J., Jan 1 2018, Methods in Enzymology. Allen, K. N. (ed.). Academic Press Inc., p. 269-297 29 p. (Methods in Enzymology; vol. 607).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Polymerase II
Isomerization
Phosphoric Monoester Hydrolases
Proline
Conformations

Cytolytic T lymphocyte clones in anti-viral immunity: Effector function in vivo and mechanism of action

Braciale, T. J., Lukacher, A. E., Sweetser, M. T. & Braciale, V. L., Jan 1 2018, Cytolytic Lymphocytes and Complement Effectors of the Immune System. CRC Press, Vol. 2. p. 161-174 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunity
Clone Cells
T-Lymphocytes
Lung
Viral Load

Detecting purinosome metabolon formation with fluorescence microscopy

Pedley, A. M. & Benkovic, S. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 279-289 11 p. (Methods in Molecular Biology; vol. 1764).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence Microscopy
Enzymes
Multienzyme Complexes
Purines
Biosynthetic Pathways

Fluorescence-Based Measurements of Store-Operated Ca 2+ Entry in Cancer Cells Using Fluo-4 and Confocal Live-Cell Imaging

Lu, F., Sun, J., Sun, T., Cheng, H. & Yang, S., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 63-68 6 p. (Methods in Molecular Biology; vol. 1843).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence
Calcium
Neoplasms
Calcium Signaling
Confocal Microscopy

Immunosuppression by intestinal stromal cells

Pinchuk, I. & Powell, D. W., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 115-129 15 p. (Advances in Experimental Medicine and Biology; vol. 1060).

Research output: Chapter in Book/Report/Conference proceedingChapter

Stromal Cells
Stem cells
Mesenchymal Stromal Cells
Immunosuppression
Myofibroblasts

Predicting Off-Target Effects of Therapeutic Antiviral Ribonucleosides: Inhibition of Mitochondrial RNA Transcription

Arnold, J. J. & Cameron, C. E., Feb 21 2018, Mitochondrial Dysfunction Caused by Drugs and Environmental Toxicants. wiley, Vol. 1-2. p. 407-417 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ribonucleosides
Therapeutic Uses
Transcription
Antiviral Agents
Viruses
5 Citations (Scopus)

Stress erythropoiesis model systems

Bennett, L. F., Liao, C. & Paulson, R., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 91-102 12 p. (Methods in Molecular Biology; vol. 1698).

Research output: Chapter in Book/Report/Conference proceedingChapter

Erythropoiesis
Spleen
Erythrocytes
Bone Marrow
Liver

Study of the Endogenous CRAC Channel Using shRNA-Mediated Gene Silencing

Zhang, X., Spinelli, A. M., Zhang, W. & Trebak, M., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 137-145 9 p. (Methods in Molecular Biology; vol. 1843).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Silencing
Small Interfering RNA
Extracellular Space
Knockout Mice
Proteins

The Use of 13C Direct-Detect NMR to Characterize Flexible and Disordered Proteins

Cook, E. C., Usher, G. A. & Showalter, S. A., Jan 1 2018, Methods in Enzymology. Rhoades, E. (ed.). Academic Press Inc., p. 81-100 20 p. (Methods in Enzymology; vol. 611).

Research output: Chapter in Book/Report/Conference proceedingChapter

Intrinsically Disordered Proteins
Nuclear magnetic resonance
Nuclear magnetic resonance spectroscopy
Magnetic Resonance Spectroscopy
Proteins
2017
6 Citations (Scopus)

Cardiovascular and hemostatic disorders: Role of STIM and orai proteins in vascular Disorders

Tanwar, J., Trebak, M. & Motiani, R. K., Jan 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 425-452 28 p. (Advances in Experimental Medicine and Biology; vol. 993).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hemostatic Disorders
Hemostatics
Blood Vessels
Endoplasmic Reticulum
Proteins

Directed differentiation of human pluripotent stem cells for therapeutic applications

Randolph, L. N., Witmer, E. B. & Lian, X., Jan 1 2017, Tissue Engineering and Nanotheranostics. World Scientific Publishing Co. Pte Ltd, p. 75-100 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pluripotent Stem Cells
Stem cells
Cell Lineage
Therapeutics
Intercellular Signaling Peptides and Proteins
1 Citation (Scopus)

Generation and infection of organotypic cultures with Epstein-Barr virus

Temple, R. M., Meyers, C. & Sample, C. E., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 65-78 14 p. (Methods in Molecular Biology; vol. 1532).

Research output: Chapter in Book/Report/Conference proceedingChapter

Human Herpesvirus 4
Epstein-Barr Virus Infections
Epithelial Cells
Infection
Life Cycle Stages
1 Citation (Scopus)

In vitro assays for RNA binding and protein priming of hepatitis B virus polymerase

Clark, D. N., Jones, S. A. & Hu, J., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 157-177 21 p. (Methods in Molecular Biology; vol. 1540).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA-Binding Proteins
Hepatitis B virus
RNA
Viral DNA
Proteins

Participation of Fos and Jun in multistage carcinogenesis

Glick, A. & Yuspa, S. H., Jan 1 2017, The FOS and JUN Families of Transcription Factors. CRC Press, p. 275-293 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carcinogenesis
Carcinogens
Genes
Mammals
Neoplasms
5 Citations (Scopus)

Store-independent orai channels regulated by STIM

Zhang, X., Gueguinou, M. & Trebak, M., Jan 1 2017, Calcium Entry Channels in Non-Excitable Cells. CRC Press, p. 197-213 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Calcium
Leukotriene C4
Arachidonic Acid
Proteins
Calcium Signaling
8 Citations (Scopus)

The Regulation of Pathways of Inflammation and Resolution in Immune Cells and Cancer Stem Cells by Selenium

Diwakar, B. T., Korwar, A. M., Paulson, R. F. & Prabhu, K. S., Jan 1 2017, Advances in Cancer Research. Academic Press Inc., p. 153-172 20 p. (Advances in Cancer Research; vol. 136).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neoplastic Stem Cells
Selenium
Inflammation
Neoplasms
Tumor Microenvironment

Vitamin D and Inflammatory Bowel Disease

Cantorna, M. T. & Bruce, D., Dec 14 2017, Health, Disease and Therapeutics. Elsevier Inc., Vol. 2. p. 1025-1036 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

inflammatory bowel disease
vitamin D
Inflammatory Bowel Diseases
Vitamin D
inflammation
2016
2 Citations (Scopus)

A High-Throughput Biological Calorimetry Core: Steps to Startup, Run, and Maintain a Multiuser Facility

Yennawar, N., Fecko, J. A., Showalter, S. A. & Bevilacqua, P. C., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 435-460 26 p. (Methods in Enzymology; vol. 567).

Research output: Chapter in Book/Report/Conference proceedingChapter

Calorimetry
Throughput
Chemical Engineering
Ligands
Bioengineering
4 Citations (Scopus)

Assessing Coupled Protein Folding and Binding Through Temperature-Dependent Isothermal Titration Calorimetry

Sahu, D., Bastidas, M., Lawrence, C. W., Noid, W. G. & Showalter, S. A., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 23-45 23 p. (Methods in Enzymology; vol. 567).

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein folding
Calorimetry
Protein Folding
Titration
Protein Binding
10 Citations (Scopus)

Directed endothelial progenitor differentiation from human pluripotent stem cells via wnt activation under defined conditions

Bao, X., Lian, X. & Palecek, S. P., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 183-196 14 p. (Methods in Molecular Biology; vol. 1481).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pluripotent Stem Cells
Endothelial Cells
Catenins
Human Development
Drug Discovery

Expression and purification of mitochondrial RNA polymerase and transcription factor a from drosophila melanogaster

Gajewski, J. P., Arnold, J. J., Salminen, T. S., Kaguni, L. S. & Cameron, C. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 199-210 12 p. (Methods in Molecular Biology; vol. 1351).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA-Directed RNA Polymerases
Drosophila melanogaster
Transcription Factors
Mitochondrial Genes
Small Ubiquitin-Related Modifier Proteins
8 Citations (Scopus)

Gambogic acid and its role in chronic diseases

Pandey, M. K., Karelia, D. & Amin, S. G., Sep 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 375-395 21 p. (Advances in Experimental Medicine and Biology; vol. 928).

Research output: Chapter in Book/Report/Conference proceedingChapter

Spices
Chronic Disease
Garcinia
Ayurvedic Medicine
Dermatitis
1 Citation (Scopus)

Induction and purification of c. Difficile phage tail-like particles

Hegarty, J. P., Sangster, W., Ashley, R. E., Myers, R., Hafenstein, S. & Stewart, D. B., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 167-175 9 p. (Methods in Molecular Biology; vol. 1476).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacteriophages
Bacteriocins
Viral Genome
Capsid
Infection
3 Citations (Scopus)

Polymerase mechanism-based method of viral attenuation

Lee, C. A., August, A., Arnold, J. J. & Cameron, C. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 83-104 22 p. (Methods in Molecular Biology; vol. 1349).

Research output: Chapter in Book/Report/Conference proceedingChapter

Vaccines
Viruses
Lysine
RNA Viruses
Mutation
1 Citation (Scopus)

Protein conformational motions: Enzyme catalysis

Huang, X., Tony Liu, C. & Benkovic, S. J., May 17 2016, Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 21-46 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalysis
Enzymes
Protein
Motion
Proteins
1 Citation (Scopus)

The role of omega-3 fatty acids in breast cancer prevention

Manni, A., El-Bayoumy, K., Skibinski, C. G., Thompson, H. J., Santucci-Pereira, J., Bidinotto, L. T. & Russo, J., Jan 1 2016, Trends in Breast Cancer Prevention. Springer International Publishing, p. 51-81 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Omega-3 Fatty Acids
Breast Neoplasms
Estrogen Receptor Modulators
Tamoxifen
Chemoprevention
2 Citations (Scopus)

The role of selenoproteins in resolution of inflammation

Diwakar, B. T., Finch, E. R., Liao, C., Shay, A. E. & Prabhu, K. S., Jan 1 2016, Selenium: Its Molecular Biology and Role in Human Health, Fourth Edition. Springer International Publishing, p. 499-510 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Selenoproteins
selenoproteins
Macrophages
inflammation
Inflammation
2 Citations (Scopus)

Transient receptor potential canonical 7 (TRPC7), a calcium (Ca2+) permeable non-selective cation channel

Zhang, X., Spinelli, A. M., Masiello, T. & Trebak, M., May 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 251-264 14 p. (Advances in Experimental Medicine and Biology; vol. 898).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cations
Gq-G11 GTP-Binding Protein alpha Subunits
Calcium
Diglycerides
Type C Phospholipases
2015

Chromatin dynamics and genome organization in development and disease

Deng, C., Patel, B., Lin, X., Li, Y. & Huang, S., Jan 1 2015, Epigenetic Gene Expression and Regulation. Elsevier Inc., p. 95-115 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chromatin
Genome
Chromosomes
Gene Expression
Carrier Proteins
5 Citations (Scopus)

Forms of selenium in cancer prevention

El-Bayoumy, K., Sinha, R. & Richie, J., Jan 1 2015, Diversity of Selenium Functions in Health and Disease. CRC Press, p. 137-172 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Selenoproteins
Selenium
Selenium Compounds
Selenocysteine
Neoplasms

Influence of gut microbiota on hepatic lipogenesis and disease pathogenesis

Singh, V., Yeoh, B. S., Ntambi, J. M. & Vijay-Kumar, M., Jan 1 2015, Hepatic De Novo Lipogenesis and Regulation of Metabolism. Springer International Publishing, p. 189-209 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipogenesis
Liver
Metabolites
proctolin
Metabolism

Intra-cellular tyrosine kinase

Irby, R. & Yeatman, T. J., Jan 1 2015, Molecular Oncology: Causes of Cancer and Targets for Treatment. Cambridge University Press, p. 231-242 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein-Tyrosine Kinases
Phosphorylation
Proteins
Phosphotransferases
General Transcription Factors

Selenium mediates a switch in macrophage polarization

Prabhu, K. S., Kudva, A. K. & Nelson, S. M., Jan 1 2015, Diversity of Selenium Functions in Health and Disease. CRC Press, p. 293-308 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Macrophages
Selenium
Switches
Polarization
Systemic Inflammatory Response Syndrome

Techniques Analyzing Chromatin Modifications at Specific Single Loci

Chen, X. A., Sun, J. & Wang, Y., Jun 17 2015, Epigenetic Technological Applications. Elsevier Inc., p. 79-100 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Chromatin
Histones
DNA
Lysine
2014

Epithelial Skin Cancer

Glick, A. B. & Yuspa, S. H., Mar 2014, The Molecular Basis of Cancer: Fourth Edition. Elsevier Inc.

Research output: Chapter in Book/Report/Conference proceedingChapter

Skin Neoplasms

Metabolomics

Belton, B. R., Correll, J. B. & Patterson, A. D., Jan 1 2014, Applications of High-Resolution Mass Spectrometry in Drug Discovery and Development. Future Medicine Ltd., p. 106-118 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tissue Extracts
Plasmas
Molecules
Metabolomics
3 Citations (Scopus)

Native human papillomavirus production, quantification, and infectivity analysis

Biryukov, J., Cruz, L., Ryndock, E. J. & Meyers, C., Oct 27 2014, Cervical Cancer: Methods and Protocols. Springer New York, p. 317-331 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Groups
Virion
Research
Transfection
Epithelium

Prostate cancer: How helpful are natural agents for prevention?

Pandey, M. K., Kunnumakkara, A. B. & Amin, S. G., Dec 9 2014, Anticancer Properties of Fruits and Vegetables: A Scientific Review. World Scientific Publishing Co., p. 251-276 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Prostatic Neoplasms
4 Citations (Scopus)

Stressed for success: How the berry's wild origins result in multifaceted health protections

Lila, M. A., Kellogg, J., Grace, M. H., Yousef, G. G., Kraft, T. B. & Rogers, R. B., Jan 13 2014, X International Symposium on Vaccinium and Other Superfruits. van Kooten, O. & Brouns, F. (eds.). p. 23-44 22 p. (Acta Horticulturae; vol. 1017).

Research output: Chapter in Book/Report/Conference proceedingChapter

small fruits
phytopharmaceuticals
obesity
metabolic syndrome
lava
2013
32 Citations (Scopus)

Detection of senescence-associated heterochromatin foci (SAHF)

Aird, K. M. & Zhang, R., 2013, Cell Senescence: Methods and Protocols. Humana Press Inc., p. 185-196 12 p. (Methods in Molecular Biology; vol. 965).

Research output: Chapter in Book/Report/Conference proceedingChapter

Heterochromatin
Cell Cycle
Information Dissemination
Cell Aging
Cytostatic Agents

DNA Replication Fork, Bacterial

Spiering, M. M. & Benkovic, S. J., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 114-117 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA Replication
DNA
Escherichia coli
Base Pairing
Clamping devices
28 Citations (Scopus)

Emerging Roles for Native Orai Ca2+ Channels in Cardiovascular Disease

Ruhle, B. & Trebak, M., 2013, Current Topics in Membranes. Academic Press Inc., p. 209-235 27 p. (Current Topics in Membranes; vol. 71).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiovascular Diseases
Inositol 1,4,5-Trisphosphate
Cardiovascular System
Endoplasmic Reticulum
Cell Membrane

Generation of antigen-specific T lymphocytes from induced pluripotent stem cells for adoptive immunotherapy

Lei, F., Haque, R., Xiong, X. & Song, J., Jan 1 2013, Stem Cells and Cancer Stem Cells, Volume 10: Therapeutic Applications in Disease and Injury. Springer Netherlands, p. 105-121 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adoptive Immunotherapy
Induced Pluripotent Stem Cells
T-Lymphocytes
Antigens
Neoplasms

Identification of Recurrent DNA Copy Number Aberrations in Tumors

Walter, V., Nobel, A. B., Hayes, D. N. & Wright, F. A., Apr 8 2013, Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH, Vol. 3. p. 239-260 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Aberrations
Tumors
DNA
Neoplasms
Genes

Nonmelanoma Skin Cancers: Basal Cell and Squamous Cell Carcinomas

Wood, G. S., Xu, Y. G., Aylward, J. L., Spiegelman, V., Vanness, E., Teng, J. M. C. & Snow, S. N., Oct 22 2013, Abeloff's Clinical Oncology: Fifth Edition. Elsevier Inc., p. 1092-1111 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Skin Neoplasms
Squamous Cell Carcinoma