Research Output 1963 2019

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2019

CryoEM reconstruction approaches to resolve asymmetric features

Goetschius, D. J., Lee, H. & Hafenstein, S., Jan 1 2019, Advances in Virus Research. Rey, F. A. (ed.). Academic Press Inc., p. 73-91 19 p. (Advances in Virus Research; vol. 105).

Research output: Chapter in Book/Report/Conference proceedingChapter

Viruses
Capsid
Life Cycle Stages
Genome
Proteins

HIV–HBV and HIV–HCV coinfection and liver cancer development

Hu, J., Liu, K. & Luo, J., Jan 1 2019, Cancer Treatment and Research. Springer International Publishing, p. 231-250 20 p. (Cancer Treatment and Research; vol. 177).

Research output: Chapter in Book/Report/Conference proceedingChapter

Liver Neoplasms
Coinfection
Hepatitis B virus
HIV
Hepacivirus

Human papillomavirus infection and cervical cancer in HIV+ women

Du, P., Jan 1 2019, Cancer Treatment and Research. Springer International Publishing, p. 105-129 25 p. (Cancer Treatment and Research; vol. 177).

Research output: Chapter in Book/Report/Conference proceedingChapter

Papillomavirus Infections
Uterine Cervical Neoplasms
HIV
Incidence
Early Detection of Cancer
2018

Chemical Tools for Studying the Impact of cis/trans Prolyl Isomerization on Signaling: A Case Study on RNA Polymerase II Phosphatase Activity and Specificity

Burkholder, N. T., Medellin, B., Irani, S., Matthews, W., Showalter, S. A. & Zhang, Y. J., Jan 1 2018, Methods in Enzymology. Allen, K. N. (ed.). Academic Press Inc., p. 269-297 29 p. (Methods in Enzymology; vol. 607).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Polymerase II
Isomerization
Phosphoric Monoester Hydrolases
Proline
Conformations

Cytolytic T lymphocyte clones in anti-viral immunity: Effector function in vivo and mechanism of action

Braciale, T. J., Lukacher, A., Sweetser, M. T. & Braciale, V. L., Jan 1 2018, Cytolytic Lymphocytes and Complement Effectors of the Immune System. CRC Press, Vol. 2. p. 161-174 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunity
Clone Cells
T-Lymphocytes
Lung
Viral Load

Detecting purinosome metabolon formation with fluorescence microscopy

Pedley, A. M. & Benkovic, S., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 279-289 11 p. (Methods in Molecular Biology; vol. 1764).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence Microscopy
Enzymes
Multienzyme Complexes
Purines
Biosynthetic Pathways

Fluorescence-Based Measurements of Store-Operated Ca 2+ Entry in Cancer Cells Using Fluo-4 and Confocal Live-Cell Imaging

Lu, F., Sun, J., Sun, T., Cheng, H. & Yang, S., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 63-68 6 p. (Methods in Molecular Biology; vol. 1843).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence
Calcium
Neoplasms
Calcium Signaling
Confocal Microscopy

Immunosuppression by intestinal stromal cells

Pinchuk, I. & Powell, D. W., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 115-129 15 p. (Advances in Experimental Medicine and Biology; vol. 1060).

Research output: Chapter in Book/Report/Conference proceedingChapter

Stromal Cells
Stem cells
Mesenchymal Stromal Cells
Immunosuppression
Myofibroblasts

Predicting Off-Target Effects of Therapeutic Antiviral Ribonucleosides: Inhibition of Mitochondrial RNA Transcription

Arnold, J. J. & Cameron, C. E., Feb 21 2018, Mitochondrial Dysfunction Caused by Drugs and Environmental Toxicants. wiley, Vol. 1-2. p. 407-417 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ribonucleosides
Therapeutic Uses
Transcription
Antiviral Agents
Viruses
2 Citations (Scopus)

Stress erythropoiesis model systems

Bennett, L. F., Liao, C. & Paulson, R., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 91-102 12 p. (Methods in Molecular Biology; vol. 1698).

Research output: Chapter in Book/Report/Conference proceedingChapter

Erythropoiesis
Spleen
Erythrocytes
Bone Marrow
Liver

Study of the Endogenous CRAC Channel Using shRNA-Mediated Gene Silencing

Zhang, X., Spinelli, A. M., Zhang, W. & Trebak, M., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 137-145 9 p. (Methods in Molecular Biology; vol. 1843).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Silencing
Small Interfering RNA
Extracellular Space
Knockout Mice
Proteins

The Use of 13C Direct-Detect NMR to Characterize Flexible and Disordered Proteins

Cook, E. C., Usher, G. A. & Showalter, S. A., Jan 1 2018, Methods in Enzymology. Rhoades, E. (ed.). Academic Press Inc., p. 81-100 20 p. (Methods in Enzymology; vol. 611).

Research output: Chapter in Book/Report/Conference proceedingChapter

Intrinsically Disordered Proteins
Nuclear magnetic resonance
Nuclear magnetic resonance spectroscopy
Magnetic Resonance Spectroscopy
Proteins
2017
4 Citations (Scopus)

Cardiovascular and hemostatic disorders: Role of STIM and orai proteins in vascular Disorders

Tanwar, J., Trebak, M. & Motiani, R. K., Jan 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 425-452 28 p. (Advances in Experimental Medicine and Biology; vol. 993).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hemostatic Disorders
Hemostatics
Blood Vessels
Endoplasmic Reticulum
Proteins
1 Citation (Scopus)

Generation and infection of organotypic cultures with Epstein-Barr virus

Temple, R. M., Meyers, C. & Sample, C., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 65-78 14 p. (Methods in Molecular Biology; vol. 1532).

Research output: Chapter in Book/Report/Conference proceedingChapter

Human Herpesvirus 4
Epstein-Barr Virus Infections
Epithelial Cells
Infection
Life Cycle Stages
1 Citation (Scopus)

In vitro assays for RNA binding and protein priming of hepatitis B virus polymerase

Clark, D. N., Jones, S. A. & Hu, J., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 157-177 21 p. (Methods in Molecular Biology; vol. 1540).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA-Binding Proteins
Hepatitis B virus
RNA
Viral DNA
Proteins

Participation of Fos and Jun in multistage carcinogenesis

Glick, A. B. & Yuspa, S. H., Jan 1 2017, The FOS and JUN Families of Transcription Factors. CRC Press, p. 275-293 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carcinogenesis
Carcinogens
Genes
Mammals
Neoplasms
3 Citations (Scopus)

Store-independent orai channels regulated by STIM

Zhang, X., Gueguinou, M. & Trebak, M., Jan 1 2017, Calcium Entry Channels in Non-Excitable Cells. CRC Press, p. 197-213 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Calcium
Leukotriene C4
Arachidonic Acid
Proteins
Calcium Signaling
6 Citations (Scopus)

The Regulation of Pathways of Inflammation and Resolution in Immune Cells and Cancer Stem Cells by Selenium

Diwakar, B. T., Korwar, A. M., Paulson, R. & Prabhu, K. S., Jan 1 2017, Advances in Cancer Research. Academic Press Inc., p. 153-172 20 p. (Advances in Cancer Research; vol. 136).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neoplastic Stem Cells
Selenium
Inflammation
Neoplasms
Tumor Microenvironment

Vitamin D and Inflammatory Bowel Disease

Cantorna, M. T-A. & Bruce, D., Dec 14 2017, Health, Disease and Therapeutics. Elsevier Inc., Vol. 2. p. 1025-1036 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

inflammatory bowel disease
vitamin D
Inflammatory Bowel Diseases
Vitamin D
inflammation
2016
2 Citations (Scopus)

A High-Throughput Biological Calorimetry Core: Steps to Startup, Run, and Maintain a Multiuser Facility

Yennawar, N., Fecko, J. A., Showalter, S. A. & Bevilacqua, P. C., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 435-460 26 p. (Methods in Enzymology; vol. 567).

Research output: Chapter in Book/Report/Conference proceedingChapter

Calorimetry
Throughput
Chemical Engineering
Ligands
Bioengineering
3 Citations (Scopus)

Assessing Coupled Protein Folding and Binding Through Temperature-Dependent Isothermal Titration Calorimetry

Sahu, D., Bastidas, M., Lawrence, C. W., Noid, W. G. & Showalter, S. A., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 23-45 23 p. (Methods in Enzymology; vol. 567).

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein folding
Calorimetry
Protein Folding
Titration
Protein Binding

Expression and purification of mitochondrial RNA polymerase and transcription factor a from drosophila melanogaster

Gajewski, J. P., Arnold, J. J., Salminen, T. S., Kaguni, L. S. & Cameron, C. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 199-210 12 p. (Methods in Molecular Biology; vol. 1351).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA-Directed RNA Polymerases
Drosophila melanogaster
Transcription Factors
Mitochondrial Genes
Small Ubiquitin-Related Modifier Proteins
7 Citations (Scopus)

Gambogic acid and its role in chronic diseases

Pandey, M. K., Karelia, D. & Amin, S., Sep 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 375-395 21 p. (Advances in Experimental Medicine and Biology; vol. 928).

Research output: Chapter in Book/Report/Conference proceedingChapter

Spices
Chronic Disease
Garcinia
Ayurvedic Medicine
Dermatitis
1 Citation (Scopus)

Induction and purification of c. Difficile phage tail-like particles

Hegarty, J. P., Sangster, W., Ashley, R. E., Myers, R., Hafenstein, S. & Stewart, D. B., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 167-175 9 p. (Methods in Molecular Biology; vol. 1476).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacteriophages
Bacteriocins
Viral Genome
Capsid
Infection
1 Citation (Scopus)

Polymerase mechanism-based method of viral attenuation

Lee, C. A., August, A., Arnold, J. J. & Cameron, C. E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 83-104 22 p. (Methods in Molecular Biology; vol. 1349).

Research output: Chapter in Book/Report/Conference proceedingChapter

Vaccines
Viruses
Lysine
RNA Viruses
Mutation
1 Citation (Scopus)

Protein conformational motions: Enzyme catalysis

Huang, X., Tony Liu, C. & Benkovic, S., May 17 2016, Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 21-46 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalysis
Enzymes
Protein
Motion
Proteins
1 Citation (Scopus)

The role of omega-3 fatty acids in breast cancer prevention

Manni, A., El-Bayoumy, K., Skibinski, C. G., Thompson, H. J., Santucci-Pereira, J., Bidinotto, L. T. & Russo, J., Jan 1 2016, Trends in Breast Cancer Prevention. Springer International Publishing, p. 51-81 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Omega-3 Fatty Acids
Breast Neoplasms
Estrogen Receptor Modulators
Tamoxifen
Chemoprevention
2 Citations (Scopus)

The role of selenoproteins in resolution of inflammation

Diwakar, B. T., Finch, E. R., Liao, C., Shay, A. E. & Prabhu, K. S., Jan 1 2016, Selenium: Its Molecular Biology and Role in Human Health, Fourth Edition. Springer International Publishing, p. 499-510 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Selenoproteins
selenoproteins
Macrophages
inflammation
Inflammation
2 Citations (Scopus)

Transient receptor potential canonical 7 (TRPC7), a calcium (Ca2+) permeable non-selective cation channel

Zhang, X., Spinelli, A. M., Masiello, T. & Trebak, M., May 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 251-264 14 p. (Advances in Experimental Medicine and Biology; vol. 898).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cations
Gq-G11 GTP-Binding Protein alpha Subunits
Calcium
Diglycerides
Type C Phospholipases
2015

Chromatin dynamics and genome organization in development and disease

Deng, C., Patel, B., Lin, X., Li, Y. & Huang, S., Jan 1 2015, Epigenetic Gene Expression and Regulation. Elsevier Inc., p. 95-115 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chromatin
Genome
Chromosomes
Gene Expression
Carrier Proteins
5 Citations (Scopus)

Forms of selenium in cancer prevention

El-Bayoumy, K., Sinha, R. & Richie, J., Jan 1 2015, Diversity of Selenium Functions in Health and Disease. CRC Press, p. 137-172 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Selenoproteins
Selenium
Selenium Compounds
Selenocysteine
Neoplasms

Influence of gut microbiota on hepatic lipogenesis and disease pathogenesis

Singh, V., Yeoh, B. S., Ntambi, J. M. & Kumar, M. V., Jan 1 2015, Hepatic De Novo Lipogenesis and Regulation of Metabolism. Springer International Publishing, p. 189-209 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipogenesis
Liver
Metabolites
proctolin
Metabolism

Intra-cellular tyrosine kinase

Irby, R. & Yeatman, T. J., Jan 1 2015, Molecular Oncology: Causes of Cancer and Targets for Treatment. Cambridge University Press, p. 231-242 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein-Tyrosine Kinases
Phosphorylation
Proteins
Phosphotransferases
General Transcription Factors

Selenium mediates a switch in macrophage polarization

Prabhu, K. S., Kudva, A. K. & Nelson, S. M., Jan 1 2015, Diversity of Selenium Functions in Health and Disease. CRC Press, p. 293-308 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Macrophages
Selenium
Switches
Polarization
Systemic Inflammatory Response Syndrome

Techniques Analyzing Chromatin Modifications at Specific Single Loci

Chen, X. A., Sun, J. & Wang, Y., Jun 17 2015, Epigenetic Technological Applications. Elsevier Inc., p. 79-100 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Chromatin
Histones
DNA
Lysine
2014

Epithelial Skin Cancer

Glick, A. B. & Yuspa, S. H., Mar 2014, The Molecular Basis of Cancer: Fourth Edition. Elsevier Inc.

Research output: Chapter in Book/Report/Conference proceedingChapter

Skin Neoplasms

Metabolomics

Belton, B. R., Correll, J. B. & Patterson, A. D., Jan 1 2014, Applications of High-Resolution Mass Spectrometry in Drug Discovery and Development. Future Medicine Ltd., p. 106-118 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tissue Extracts
Plasmas
Molecules
Metabolomics
2 Citations (Scopus)

Native human papillomavirus production, quantification, and infectivity analysis

Biryukov, J., Cruz, L., Ryndock, E. J. & Meyers, C., Oct 27 2014, Cervical Cancer: Methods and Protocols. Springer New York, p. 317-331 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Groups
Virion
Research
Transfection
Epithelium

Prostate cancer: How helpful are natural agents for prevention?

Pandey, M. K., Kunnumakkara, A. B. & Amin, S., Dec 9 2014, Anticancer Properties of Fruits and Vegetables: A Scientific Review. World Scientific Publishing Co., p. 251-276 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Prostatic Neoplasms
2013
29 Citations (Scopus)

Detection of senescence-associated heterochromatin foci (SAHF)

Aird, K. & Zhang, R., Jan 1 2013, Cell Senescence: Methods and Protocols. Humana Press Inc., p. 185-196 12 p. (Methods in Molecular Biology; vol. 965).

Research output: Chapter in Book/Report/Conference proceedingChapter

Heterochromatin
Cell Cycle
Information Dissemination
Cell Aging
Cytostatic Agents

DNA Replication Fork, Bacterial

Spiering, M. M. & Benkovic, S., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 114-117 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA Replication
DNA
Escherichia coli
Base Pairing
Clamping devices
28 Citations (Scopus)

Emerging Roles for Native Orai Ca2+ Channels in Cardiovascular Disease

Ruhle, B. & Trebak, M., Jan 1 2013, Current Topics in Membranes. Academic Press Inc., p. 209-235 27 p. (Current Topics in Membranes; vol. 71).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiovascular Diseases
Inositol 1,4,5-Trisphosphate
Cardiovascular System
Endoplasmic Reticulum
Cell Membrane

Generation of antigen-specific T lymphocytes from induced pluripotent stem cells for adoptive immunotherapy

Lei, F., Haque, R., Xiong, X. & Song, J., Jan 1 2013, Stem Cells and Cancer Stem Cells, Volume 10: Therapeutic Applications in Disease and Injury. Springer Netherlands, p. 105-121 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adoptive Immunotherapy
Induced Pluripotent Stem Cells
T-Lymphocytes
Antigens
Neoplasms

Nonmelanoma Skin Cancers: Basal Cell and Squamous Cell Carcinomas

Wood, G. S., Xu, Y. G., Aylward, J. L., Spiegelman, V., Vanness, E., Teng, J. M. C. & Snow, S. N., Oct 22 2013, Abeloff's Clinical Oncology: Fifth Edition. Elsevier Inc., p. 1092-1111 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Skin Neoplasms
Squamous Cell Carcinoma
3 Citations (Scopus)

RNA Polymerase Reaction in Bacteria

Jun, S. H., Warner, B. A. & Murakami, K., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 167-172 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA-Directed RNA Polymerases
Bacteria
Transcription
Bacterial RNA
DNA
1 Citation (Scopus)

The role of store-operated calcium channel in chronic inflammation

Yang, S. & Chang, W. C., Dec 1 2013, Chronic Inflammation: Causes, Treatment Options and Role in Disease. Nova Science Publishers, Inc., p. 1-18 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Calcium Channels
Inflammation
Calcium
Mast Cells
Endothelium
3 Citations (Scopus)

Vitamin D and the immune system

Harvey, N. C. & Cantorna, M. T-A., Jan 1 2013, Diet, Immunity and Inflammation. Elsevier Ltd, p. 244-263 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Immune system
vitamin D
Vitamin D
immune system
Immune System
2012
2 Citations (Scopus)

Balloon injury in rats as a model for studying TRP channel contribution to vascular smooth muscle remodeling

Zhang, W. & Trebak, M., Nov 19 2012, TRP Channels in Drug Discovery: Volume II. Szallasi, A. & Biro, T. (eds.). p. 101-111 11 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Transient Receptor Potential Channels
Vascular Smooth Muscle
Blood Vessels
Vascular System Injuries
Ion Channels
1 Citation (Scopus)

Cardiovascular system STIM1/Orai1-mediated store-operated Ca2+ entry in cardiovascular disease

Motiani, R. K. & Trebak, M., Nov 1 2012, Store-operated Ca2+ entry (SOCE) pathways: Emerging signaling concepts in human (patho)physiology. Springer-Verlag Wien, Vol. 9783709109625. p. 301-325 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiovascular system
Cardiovascular System
Atherosclerosis
Cardiovascular Diseases
Cell Membrane
25 Citations (Scopus)

Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq

Wal, M. & Pugh, B. F., Jan 1 2012, Methods in Enzymology. Academic Press Inc., p. 233-250 18 p. (Methods in Enzymology; vol. 513).

Research output: Chapter in Book/Report/Conference proceedingChapter

Micrococcal Nuclease
Nucleosomes
Chromosome Mapping
Yeast
Genes