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Sequence-Specific Recognition of HIV-1 DNA with Solid-State CRISPR-Cas12a-Assisted Nanopores (SCAN)

Nouri, R., Jiang, Y., Lian, X. L. & Guan, W., May 22 2020, In : ACS Sensors. 5, 5, p. 1273-1280 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Sequential loss of cytotoxic T lymphocyte responses to simian virus 40 large T antigen epitopes in t antigen transgenic mice developing osteosarcomas

Schell, T., Knowles, B. B. & Tevethia, S. S., Jun 1 2000, In : Cancer Research. 60, 11, p. 3002-3012 11 p.

Research output: Contribution to journalArticle

41 Scopus citations

Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevisiae

Ghosh, S. & Pugh, B. F., Jan 1 2011, In : Molecular and cellular biology. 31, 1, p. 190-202 13 p.

Research output: Contribution to journalArticle

23 Scopus citations

Serial analysis of chromatin occupancy identifies β-catenin target genes in colorectal carcinoma cells

Yochum, G. S., McWeeney, S., Rajaraman, V., Cleland, R., Peters, S. & Goodman, R. H., Feb 27 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 9, p. 3324-3329 6 p.

Research output: Contribution to journalArticle

77 Scopus citations

Serine phosphorylation of the STAT1 transactivation domain promotes autoreactive B cell and systemic autoimmunity development

Chodisetti, S. B., Fike, A. J., Domeier, P. P., Schell, S. L., Mockus, T. E., Choi, N. M., Corradetti, C., Hou, B., Atkins, H. M., Caricchio, R., Decker, T., Lukacher, A., Olsen, N. & Rahman, Z. S. M., May 15 2020, In : Journal of Immunology. 204, 10, p. 2641-2650 10 p.

Research output: Contribution to journalArticle

Seroreactivity to LGL leukemia-specific epitopes in aplastic anemia, myelodysplastic syndrome and paroxysmal nocturnal hemoglobinuria: Results of a bone marrow failure consortium study

Nyland, S. B., Krissinger, D. J., Clemente, M. J., Irby, R. B., Baab, K. T., Jarbadan, N. R., Sokol, L., Schaefer, E., Liao, J., Cuthbertson, D., Epling-Burnette, P., Paquette, R., List, A. F., Maciejewski, J. P. & Loughran, T. P., May 1 2012, In : Leukemia Research. 36, 5, p. 581-587 7 p.

Research output: Contribution to journalArticle

9 Scopus citations

Serum activin A does not predict ectopic pregnancy as a single measurement test, alone or as part of a multi-marker panel including progesterone and hCG

Warrick, J., Gronowski, A., Moffett, C., Zhao, Q., Bishop, E. & Woodworth, A., Apr 11 2012, In : Clinica Chimica Acta. 413, 7-8, p. 707-711 5 p.

Research output: Contribution to journalArticle

19 Scopus citations

Serum antibody levels to glycosylphosphatidylinositols in specimens derived from matched Malian children with severe or uncomplicated Plasmodium falciparum malaria and healthy controls

Cissoko, Y., Daou, M., Lyke, K. E., Dicko, A., Diarra, I., Kone, A., Guindo, A., Traore, K., Krishnegowda, G., Diallo, D. A., Doumbo, O. K., Plowe, C. V., Gowda, D. C. & Sztein, M. B., 2006, In : American Journal of Tropical Medicine and Hygiene. 75, 2, p. 199-204 6 p.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Serumantikörper gegen HPV-11 bei verschiedenen gynäkologischen Patientenkollektiven

Heim, K., Christensen, N. D., Höpfl, R., Wartusch, A., Pinzger, E., Zeimet, A., Baumgarnter, P., Marth, B., Kreidet, J. W. & Dapunt, O., Jan 1 1994, In : Gynakologisch-geburtshilfliche Rundschau. 34, p. 167-168 2 p.

Research output: Contribution to journalArticle

Serum IgG, IgM, and IgA reactivity to human papillomavirus types 11 and 6 virus-like particles in different gynecologic patient groups

Heim, K., Christensen, N. D., Hoepfl, R., Wartusch, B., Pinzger, G., Zeimet, A., Baumgartner, P., Kreider, J. W. & Dapunt, O., Aug 1995, In : Journal of Infectious Diseases. 172, 2, p. 395-402 8 p.

Research output: Contribution to journalArticle

57 Scopus citations

Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation

Li, Y., Schulz, V. P., Deng, C., Li, G., Shen, Y., Tusi, B. K., Ma, G., Stees, J., Qiu, Y., Steiner, L. A., Zhou, L., Zhao, K., Bungert, J., Gallagher, P. G. & Huang, S., Sep 6 2016, In : Nucleic acids research. 44, 15, p. 7173-7188 16 p.

Research output: Contribution to journalArticle

19 Scopus citations

Setd1a regulates progenitor B-cell-to-precursor B-cell development through histone H3 lysine 4 trimethylation and Ig heavy-chain rearrangement

Tusi, B. K., Deng, C., Salz, T., Zeumer, L., Li, Y., So, C. W. E., Morel, L. M., Qiu, Y. & Huang, S., Apr 1 2015, In : FASEB Journal. 29, 4, p. 1505-1515 11 p.

Research output: Contribution to journalArticle

16 Scopus citations

Severing of a hydrogen bond disrupts amino acid networks in the catalytically active state of the alpha subunit of tryptophan synthase

Axe, J. M., O'Rourke, K. F., Kerstetter, N. E., Yezdimer, E. M., Chan, Y. M., Chasin, A. & Boehr, D. D., Apr 2015, In : Protein Science. 24, 4, p. 484-494 11 p.

Research output: Contribution to journalArticle

14 Scopus citations

Sex-dependent VEGF expression underlies variations in human pluripotent stem cell to endothelial progenitor differentiation

Randolph, L. N., Bao, X., Oddo, M. & Lian, X. L., Dec 1 2019, In : Scientific reports. 9, 1, 16696.

Research output: Contribution to journalArticle

Open Access

SFRP2 in the aged microenvironment drives melanoma metastasis and therapy resistance

Kaur, A., Webster, M. R., Marchbank, K., Behera, R., Ndoye, A., Kugel, C. H., Dang, V. M., Appleton, J., O'Connell, M. P., Cheng, P., Valiga, A. A., Morissette, R., McDonnell, N. B., Ferrucci, L., Kossenkov, A. V., Meeth, K., Tang, H. Y., Yin, X., Wood, W. H., Lehrmann, E. & 26 others, Becker, K. G., Flaherty, K. T., Frederick, D. T., Wargo, J. A., Cooper, Z. A., Tetzlaff, M. T., Hudgens, C., Aird, K. M., Zhang, R., Xu, X., Liu, Q., Bartlett, E., Karakousis, G., Eroglu, Z., Lo, R. S., Chan, M., Menzies, A. M., Long, G. V., Johnson, D. B., Sosman, J., Schilling, B., Schadendorf, D., Speicher, D. W., Bosenberg, M., Ribas, A. & Weeraratna, A. T., Apr 14 2016, In : Nature. 532, 7598, p. 250-254 5 p.

Research output: Contribution to journalArticle

126 Scopus citations

Sf-Stk kinase activity and the Grb2 binding site are required for Epo-independent growth of primary erythroblasts infected with Friend virus

Finkelstein, L. D., Ney, P. A., Liu, Q. P., Paulson, R. F. & Correll, P. H., Jan 1 2002, In : Oncogene. 21, 22, p. 3562-3570 9 p.

Research output: Contribution to journalArticle

45 Scopus citations

Short communication: Effects of 6-nitro substitution on 5-methylchrysene tumorigenicity, mutagenicity and metabolism

El-Bayoumy, K., Amin, S. & Hecht, S. S., Dec 1 1986, In : Carcinogenesis. 7, 4, p. 673-676 4 p.

Research output: Contribution to journalArticle

8 Scopus citations

Signaling mechanism for receptor-activated canonical transient receptor potential 3 (TRPC3) channels

Trebak, M., Bird, G. S. J., McKay, R. R., Birnbaumer, L. & Putney, J. W., May 2 2003, In : Journal of Biological Chemistry. 278, 18, p. 16244-16252 9 p.

Research output: Contribution to journalArticle

130 Scopus citations

Signalling by the W/Kit receptor tyrosine kinase is negatively regulated in vivo by the protein tyrosine phosphatase Shp1

Paulson, R., Vesely, S., Siminovitch, K. A. & Bernstein, A., Jul 1 1996, In : Nature Genetics. 13, 3, p. 309-315 7 p.

Research output: Contribution to journalArticle

129 Scopus citations

Signalling mechanisms for TRPC3 channels

Putney, J. W., Trebak, M., Vazquez, G., Wedel, B., Bird, G. S. J., Gill, Putney & Muallem, Dec 1 2004, In : Novartis Foundation Symposium. 258, p. 123-139 17 p.

Research output: Contribution to journalArticle

21 Scopus citations

Signals from OX40 regulate nuclear factor of activated T cells c1 and T cell helper 2 lineage commitment

So, T., Song, J., Sugie, K., Altman, A. & Croft, M., Mar 7 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 10, p. 3740-3745 6 p.

Research output: Contribution to journalArticle

85 Scopus citations

Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers

Dulin, D., Arnold, J. J., van Laar, T., Oh, H. S., Lee, C., Perkins, A. L., Harki, D. A., Depken, M., Cameron, C. E. & Dekker, N. H., Oct 24 2017, In : Cell Reports. 21, 4, p. 1063-1076 14 p.

Research output: Contribution to journalArticle

12 Scopus citations

Sign Determination of Electron-Spin Distributions in Iminoxy Radical Analogues

Underwood, G. R. & El-Bayoumy, K., Jan 1 1982, In : Journal of the American Chemical Society. 104, 11, p. 3007-3013 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Silymarin ameliorates fructose induced insulin resistance syndrome by reducing de novo hepatic lipogenesis in the rat

Prakash, P., Singh, V., Jain, M., Rana, M., Khanna, V., Barthwal, M. K. & Dikshit, M., Mar 15 2014, In : European Journal of Pharmacology. 727, 1, p. 15-28 14 p.

Research output: Contribution to journalArticle

32 Scopus citations

Simple Polymethylglutarimide Microfluidic Channels With Hydrogel-Assisted Fluid Exchange

Gupta, A. V., Brigeman, A. N., Gomez, E. W. & Jackson, T. N., Apr 2018, In : IEEE Transactions on Nanobioscience. 17, 2, p. 97-101 5 p.

Research output: Contribution to journalArticle

Simplified ChIP-exo assays

Rossi, M. J., Lai, W. K. M. & Pugh, B. F., Dec 1 2018, In : Nature communications. 9, 1, 2842.

Research output: Contribution to journalArticle

12 Scopus citations
13 Scopus citations

Simultaneous isotope dilution quantification and metabolic tracing of deoxyribonucleotides by liquid chromatography high resolution mass spectrometry

Kuskovsky, R., Buj, R., Xu, P., Hofbauer, S., Doan, M. T., Jiang, H., Bostwick, A., Mesaros, C., Aird, K. M. & Snyder, N. W., Mar 1 2019, In : Analytical Biochemistry. 568, p. 65-72 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Simultaneously sensitive detection of multiple miRNAs based on a strand displacement amplification

Tian, T., Xiao, H., Zhang, X., Peng, S., Zhang, X., Guo, S., Wang, S., Liu, S., Zhou, X., Meyers, C. & Zhou, X., 2013, In : Chemical Communications. 49, 1, p. 75-77 3 p.

Research output: Contribution to journalArticle

38 Scopus citations

Simultaneous targeting of COX-2 and AKT using selenocoxib-1-GSH to inhibit melanoma

Gowda, R., Madhunapantula, S. V., Desai, D., Amin, S. & Robertson, G. P., Jan 1 2013, In : Molecular cancer therapeutics. 12, 1, p. 3-15 13 p.

Research output: Contribution to journalArticle

33 Scopus citations

Single amino acid changes in the virus capsid permit coxsackievirus B3 to bind decay-accelerating factor

Pan, J., Narayanan, B., Shah, S., Yoder, J. D., Cifuente, J. O., Hafenstein, S. & Bergelson, J. M., Jul 1 2011, In : Journal of virology. 85, 14, p. 7436-7443 8 p.

Research output: Contribution to journalArticle

27 Scopus citations

Single-Cell Virology: On-Chip Investigation of Viral Infection Dynamics

Guo, F., Li, S., Caglar, M. U., Mao, Z., Liu, W., Woodman, A., Arnold, J. J., Wilke, C. O., Huang, T. J. & Cameron, C. E., Nov 7 2017, In : Cell Reports. 21, 6, p. 1692-1704 13 p.

Research output: Contribution to journalArticle

20 Scopus citations

Single-molecule and transient kinetics investigation of the interaction of dihydrofolate reductase with NADPH and dihydrofolate

Zhang, Z., Rajagopalan, P. T. R., Selzer, T., Benkovic, S. J. & Hammes, G. G., Mar 2 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 9, p. 2764-2769 6 p.

Research output: Contribution to journalArticle

61 Scopus citations

Single-molecule imaging of RNA polymerase-DNA interactions in real time

Harada, Y., Funatsu, T., Murakami, K., Nonoyama, Y., Ishihama, A. & Yanagida, T., Jan 1 1999, In : Biophysical journal. 76, 2, p. 709-715 7 p.

Research output: Contribution to journalArticle

217 Scopus citations

Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: Multiple pathways of holoenzyme formation

Smiley, R. D., Zhuang, Z., Benkovic, S. & Hammes, G. G., Jul 4 2006, In : Biochemistry. 45, 26, p. 7990-7997 8 p.

Research output: Contribution to journalArticle

33 Scopus citations

Single-molecule mechanical identification and sequencing

Ding, F., Manosas, M., Spiering, M. M., Benkovic, S. J., Bensimon, D., Allemand, J. F. & Croquette, V., Apr 1 2012, In : Nature methods. 9, 4, p. 367-372 6 p.

Research output: Contribution to journalArticle

31 Scopus citations

Single-molecule sequencing reveals patterns of preexisting drug resistance that suggest treatment strategies in Philadelphia-positive leukemias

Schmitt, M. W., Pritchard, J. R., Leighow, S. M., Aminov, B. I., Beppu, L., Kim, D. S., Hodgson, J. G., Rivera, V. M., Loeb, L. A. & Radich, J. P., Nov 1 2018, In : Clinical Cancer Research. 24, 21, p. 5321-5334 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Single mutations in the VP2 300 loop region of the three-fold spike of the carnivore parvovirus capsid can determine host range

Allison, A. B., Organtini, L. J., Zhang, S., Hafenstein, S. L., Holmes, E. C. & Parrish, C. R., Jan 1 2016, In : Journal of virology. 90, 2, p. 753-767 15 p.

Research output: Contribution to journalArticle

22 Scopus citations

Single nucleotide polymorphism in the microRNA-199a binding site of HIF1A gene is associated with pancreatic ductal adenocarcinoma risk and worse clinical outcomes

Wang, X., Ren, H., Zhao, T., Ma, W., Dong, J., Zhang, S., Xin, W., Yang, S., Jia, L. & Hao, J., Mar 22 2016, In : Oncotarget. 7, 12, p. 13717-13729 13 p.

Research output: Contribution to journalArticle

24 Scopus citations

Single-nucleotide resolution of RNA strands in the presence of their RNA complements

Arnold, J. J., Ghosh, S. K. B., Bevilacqua, P. C. & Cameron, C. E., Jan 1 1999, In : BioTechniques. 27, 3, p. 450-456 7 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Site-directed mutations of T4 helicase loading protein (gp59) reveal multiple modes of DNA polymerase inhibition and the mechanism of unlocking by gp41 helicase

Nelson, S. W., Yang, J. & Benkovic, S. J., Mar 31 2006, In : Journal of Biological Chemistry. 281, 13, p. 8697-8706 10 p.

Research output: Contribution to journalArticle

13 Scopus citations

Site-specific adducts derived from the binding of anti-5-methylchrysene diol epoxide enantiomers to DNA: Synthesis and characteristics

Xu, R., Dwarakanath, S., Cosman, M., Amin, S. & Geacintov, N. E., Sep 1996, In : Carcinogenesis. 17, 9, p. 2035-2042 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Skeletal muscle gene expression in response to resistance exercise: Sex specific regulation

Liu, D., Sartor, M. A., Nader, G. A., Gutmann, L., Treutelaar, M. K., Pistilli, E. E., IglayReger, H. B., Burant, C. F., Hoffman, E. P. & Gordon, P. M., Nov 24 2010, In : BMC genomics. 11, 1, 659.

Research output: Contribution to journalArticle

49 Scopus citations

Skeletor, a novel chromosomal protein that redistributes during mitosis provides evidence for the formation of a spindle matrix

Walker, D. L., Wang, D., Jin, Y., Rath, U., Wang, Y., Johansen, J. & Johansen, K. M., Dec 31 2000, In : Journal of Cell Biology. 151, 7, p. 1401-1411 11 p.

Research output: Contribution to journalArticle

78 Scopus citations

SKI-178: A multitargeted inhibitor of sphingosine kinase and microtubule dynamics demonstrating therapeutic efficacy in acute myeloid leukemia models

Hengst, J., Dick, T. E., Sharma, A., Doi, K., Hegde, S., Tan, S. F., Geffert, L., Fox, T. E., Sharma, A. K., Desai, D., Amin, S., Kester, M., Loughran, T. P., Paulson, R., Claxton, D., Wang, H-G. & Yun, J., 2017, In : Cancer Translational Medicine. 3, 4, p. 109-121

Research output: Contribution to journalArticle

Skin test to assess immunity against cottontail rabbit papillomavirus antigens in rabbits with progressing papillomas or after papilloma regression

Höpfl, R. M., Christensen, N., Angell, M. G. & Kreider, J. W., Aug 1993, In : Journal of Investigative Dermatology. 101, 2, p. 227-231 5 p.

Research output: Contribution to journalArticle

19 Scopus citations

SLC25A23 augments mitochondrial Ca2+ uptake, interacts with MCU, and induces oxidative stress-mediated cell death

Hoffman, N. E., Chandramoorthy, H. C., Shanmughapriya, S., Zhang, X. Q., Vallem, S., Doonan, P. J., Malliankaraman, K., Guo, S., Rajan, S., Elrod, J. W., Koch, W. J., Cheung, J. Y. & Madesh, M., Mar 15 2014, In : Molecular biology of the cell. 25, 6, p. 936-947 12 p.

Research output: Contribution to journalArticle

Open Access
80 Scopus citations

Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding

Coleman, R. A. & Pugh, B. F., Jul 8 1997, In : Proceedings of the National Academy of Sciences of the United States of America. 94, 14, p. 7221-7226 6 p.

Research output: Contribution to journalArticle

57 Scopus citations

Smad3 regulates senescence and malignant conversion in a mouse multistage skin carcinogenesis model

Vijayachandra, K., Lee, J. & Glick, A. B., Jul 1 2003, In : Cancer Research. 63, 13, p. 3447-3452 6 p.

Research output: Contribution to journalArticle

74 Scopus citations