Research Output

Filter
Article
Article

The use of modified and non-natural nucleotides provide unique insights into pro-mutagenic replication catalyzed by polymerase eta

Choi, J. S., Dasari, A., Hu, P., Benkovic, S. J. & Berdis, A. J., Jan 1 2016, In : Nucleic acids research. 44, 3, p. 1022-1035 14 p.

Research output: Contribution to journalArticle

3 Scopus citations

The Viral E4 Protein Is Required for the Completion of the Cottontail Rabbit Papillomavirus Productive Cycle In Vivo

Peh, W. L., Brandsma, J. L., Christensen, N. D., Cladel, N. M., Wu, X. & Doorbar, J., Feb 1 2004, In : Journal of virology. 78, 4, p. 2142-2151 10 p.

Research output: Contribution to journalArticle

60 Scopus citations

The vitamin D receptor is required for iNKT cell development

Yu, S. & Cantorna, M. T., Apr 1 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 13, p. 5207-5212 6 p.

Research output: Contribution to journalArticle

116 Scopus citations

The vitamin D receptor turns off chronically activated T cells

Cantorna, M. T. & Waddell, A., May 2014, In : Annals of the New York Academy of Sciences. 1317, 1, p. 70-75 6 p.

Research output: Contribution to journalArticle

50 Scopus citations

The wide utility of rabbits as models of human diseases

Esteves, P. J., Abrantes, J., Baldauf, H. M., BenMohamed, L., Chen, Y., Christensen, N., González-Gallego, J., Giacani, L., Hu, J., Kaplan, G., Keppler, O. T., Knight, K. L., Kong, X. P., Lanning, D. K., Le Pendu, J., De Matos, A. L., Liu, J., Liu, S., Lopes, A. M., Lu, S. & 17 others, Lukehart, S., Manabe, Y. C., Neves, F., McFadden, G., Pan, R., Peng, X., de Sousa-Pereira, P., Pinheiro, A., Rahman, M., Ruvoën-Clouet, N., Subbian, S., Tuñón, M. J., van der Loo, W., Vaine, M., Via, L. E., Wang, S. & Mage, R., May 2018, In : Experimental and Molecular Medicine. 50, 5, 66.

Research output: Contribution to journalArticle

12 Scopus citations

The X-ray crystal structure of RNA polymerase from Archaea

Hirata, A., Klein, B. J. & Murakami, K. S., Feb 14 2008, In : Nature. 451, 7180, p. 851-854 4 p.

Research output: Contribution to journalArticle

139 Scopus citations

The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration

Jun, S. H., Hirata, A., Kanai, T., Santangelo, T. J., Imanaka, T. & Murakami, K. S., Oct 14 2014, In : Nature communications. 5, 6132.

Research output: Contribution to journalArticle

24 Scopus citations

The years of the monkey

Lian, X. & Chien, K. R., Oct 1 2013, In : Cell Research. 23, 10, p. 1161-1162 2 p.

Research output: Contribution to journalArticle

1 Scopus citations

The Zta transactivator involved in induction of lytic cycle gene expression in Epstein-Barr virus-infected lymphocytes binds to both AP-1 and ZRE sites in target promoter and enhancer regions

Lieberman, P. M., Hardwick, J. M., Sample, J., Hayward, G. S. & Hayward, S. D., Jan 1 1990, In : Journal of virology. 64, 3, p. 1143-1155 13 p.

Research output: Contribution to journalArticle

143 Scopus citations

The φX174 protein J mediates DNA packaging and viral attachment to host cells

Bernal, R. A., Hafenstein, S., Esmeralda, R., Fane, B. A. & Rossmann, M. G., Apr 9 2004, In : Journal of Molecular Biology. 337, 5, p. 1109-1122 14 p.

Research output: Contribution to journalArticle

17 Scopus citations

Thickness evolution of transport properties in exfoliated Fe1+yTe nanoflakes

Hsieh, T-W., Zou, T., Hu, J., Mao, Z. Q., Zhang, P. P. & Ke, X., 2018, In : Journal of Physics Condensed Matter. 30, 29

Research output: Contribution to journalArticle

Thiophene Analogues of Peedianwridcne

Bost, A. K., Han ha, M. S., Sharme, S. O., Amin, S. G. & Chawla, H. P. S., Jan 1 1971, In : Synthetic Communications. 1, 1, p. 33-36 4 p.

Research output: Contribution to journalArticle

Thioredoxin reductase-1 negatively regulates HIV-1 transactivating protein Tat-dependent transcription in human macrophages

Kalantari, P., Narayan, V., Natarajan, S. K., Muralidhar, K., Gandhi, U. H., Vunta, H., Henderson, A. J. & Prabhu, K. S., Nov 28 2008, In : Journal of Biological Chemistry. 283, 48, p. 33183-33190 8 p.

Research output: Contribution to journalArticle

46 Scopus citations

Three-Dimensional in Vitro Model to Study Osteobiology and Osteopathology

Krishnan, V., Vogler, E. A. & Mastro, A. M., Dec 1 2015, In : Journal of cellular biochemistry. 116, 12, p. 2715-2723 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Three-dimensional structure of anti-5 6-dimethylchrysene-1,2-dihydrodiol-3,4-epoxide: A diol epoxide with a bay region methyl group

Afshar, C. E., Katz, A. K., Carrell, H. L., Amin, S., Desai, D. & Glusker, J. P., Aug 24 1999, In : Carcinogenesis. 20, 8, p. 1549-1553 5 p.

Research output: Contribution to journalArticle

6 Scopus citations

Three-kinase inhibitor combination recreates multipathway effects of a geldanamycin analogue on hepatocellular carcinoma cell death

Pritchard, J. R., Cosgrove, B. D., Hemann, M. T., Griffith, L. G., Wands, J. R. & Lauffenburger, D. A., Aug 1 2009, In : Molecular cancer therapeutics. 8, 8, p. 2183-2192 10 p.

Research output: Contribution to journalArticle

16 Scopus citations

Threonine 79 is a hinge residue that governs the fidelity of DNA polymerase β by helping to position the DNA within the active site

Maitra, M., Gudzelak, A., Li, S. X., Matsumoto, Y., Eckert, K. A., Jager, J. & Sweasy, J. B., Sep 20 2002, In : Journal of Biological Chemistry. 277, 38, p. 35550-35560 11 p.

Research output: Contribution to journalArticle

25 Scopus citations

Thrombin activates a membrane-associated calcium-independent PLA2 in ventricular myocytes

McHowat, J. & Creer, M. H., Feb 1 1998, In : American Journal of Physiology - Cell Physiology. 274, 2 43-2, p. C447-C454

Research output: Contribution to journalArticle

38 Scopus citations

Time-resolved events on the reaction pathway of transcript initiation by a single-subunit RNA polymerase: Raman crystallographic evidence

Chen, Y., Basu, R., Gleghorn, M. L., Murakami, K. & Carey, P. R., Aug 17 2011, In : Journal of the American Chemical Society. 133, 32, p. 12544-12555 12 p.

Research output: Contribution to journalArticle

10 Scopus citations

Timing is everything: Unifying Codon translation rates and nascent proteome behavior

Nissley, D. A. & Obrien, E. P., Dec 31 2014, In : Journal of the American Chemical Society. 136, 52, p. 17892-17898 7 p.

Research output: Contribution to journalArticle

29 Scopus citations

Tissue-based assay for ornithine decarboxylase to identify patients likely to respond to difluoromethylornithine

Levin, V. A., Jochec, J. L., Shantz, L. M., Koch, P. E. & Pegg, A. E., Nov 1 2004, In : Journal of Histochemistry and Cytochemistry. 52, 11, p. 1467-1474 8 p.

Research output: Contribution to journalArticle

4 Scopus citations
8 Scopus citations

Tissue geometry patterns epithelial-mesenchymal transition via intercellular mechanotransduction

Gomez, E. W., Chen, Q. K., Gjorevski, N. & Nelson, C. M., May 1 2010, In : Journal of cellular biochemistry. 110, 1, p. 44-51 8 p.

Research output: Contribution to journalArticle

119 Scopus citations

Tissue-spanning redox gradient-dependent assembly of native human papillomavirus type 16 virions

Conway, M. J., Alam, S., Ryndock, E. J., Cruz, L., Christensen, N. D., Roden, R. B. S. & Meyers, C., Oct 1 2009, In : Journal of virology. 83, 20, p. 10515-10526 12 p.

Research output: Contribution to journalArticle

59 Scopus citations

Tissue-specific binding of a nuclear factor to the insulin gene promoter

Sample, C. E. & Steiner, D. F., Oct 5 1987, In : FEBS Letters. 222, 2, p. 332-336 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

Tissue-specific expression of rat mRNAs homologous to cytochromes P-450b and P-450e

Omiecinski, C. J., Feb 11 1986, In : Nucleic acids research. 14, 3, p. 1525-1539 15 p.

Research output: Contribution to journalArticle

76 Scopus citations

Tissue-specific gene expression during productive human papillomavirus 16 infection of cervical, foreskin, and tonsil epithelium

Chatterjee, S., Kang, S. D., Alam, S., Salzberg, A. C., Milici, J., Van Der Burg, S. H., Freeman, W. & Meyers, C., Sep 1 2019, In : Journal of virology. 93, 17, e00915-19.

Research output: Contribution to journalArticle

1 Scopus citations

Tissue xenografts as a model system for study of the pathogenesis of papillomaviruses

Howett, M. K., Christensen, N. & Kreider, J. W., Jan 1 1997, In : Clinics in Dermatology. 15, 2, p. 229-236 8 p.

Research output: Contribution to journalArticle

16 Scopus citations

Titration of HPV-11 infectivity and antibody neutralization can be measured in vitro

Smith, L. H., Foster, C., Hitchcock, M. E., Leiserowitz, G. S., Hall, K., Isseroff, R., Christensen, N. D. & Kreider, J. W., Jan 1 1995, In : Journal of Investigative Dermatology. 105, 3, p. 438-444 7 p.

Research output: Contribution to journalArticle

55 Scopus citations

T lineage differentiation from induced pluripotent stem cells

Lei, F., Haque, R., Weiler, L., Vrana, K. E. & Song, J., Oct 9 2009, In : Cellular Immunology. 260, 1, p. 1-5 5 p.

Research output: Contribution to journalArticle

33 Scopus citations

TLR4 activation enhances the PD-L1-mediated tolerogenic capacity of colonic CD90+stromal cells

Beswick, E. J., Johnson, J. R., Saada, J. I., Humen, M., House, J., Dann, S., Qiu, S., Brasier, A. R., Powell, D. W., Reyes, V. E. & Pinchuk, I. V., Sep 1 2014, In : Journal of Immunology. 193, 5, p. 2218-2229 12 p.

Research output: Contribution to journalArticle

Open Access
31 Scopus citations

TLR5 activation induces secretory interleukin-1 receptor antagonist (sIL-1Ra) and reduces inflammasome-associated tissue damage

Carvalho, F. A., Aitken, J. D., Gewirtz, A. T. & Vijay-Kumar, M., Jan 1 2011, In : Mucosal Immunology. 4, 1, p. 102-111 10 p.

Research output: Contribution to journalArticle

45 Scopus citations

TLR5 or NLRC4 is necessary and sufficient for promotion of humoral immunity by flagellin

Kumar, M. V., Carvalho, F. A., Aitken, J. D., Fifadara, N. H. & Gewirtz, A. T., Dec 1 2010, In : European Journal of Immunology. 40, 12, p. 3528-3534 7 p.

Research output: Contribution to journalArticle

87 Scopus citations

Tobacco derived carcinogen in pancreatic juice of smokers -a causative factor for pancreatic cancer?

Leder, G. H., Prokopczyk, B., Ramadani, M., Cunningham, A. J., Siech, M., Schwarz, A., Schwarz, M., Poch, B., Link, K. H., Bologna, M., Amin, S., Desai, D., Hoffmann, D., El-Bayoumy, K. & Beger, H. G., Dec 1 2001, In : Langenbeck's Archives of Surgery. 386, 5, 1 p.

Research output: Contribution to journalArticle

Tobacco-specific nitrosamine-derived O 2-alkylthymidines are potent mutagenic lesions in SOS-induced escherichia coli

Jasti, V. P., Spratt, T. E. & Basu, A. K., Nov 21 2011, In : Chemical research in toxicology. 24, 11, p. 1833-1835 3 p.

Research output: Contribution to journalArticle

23 Scopus citations

Toll-like receptor 5-deficient mice have dysregulated intestinal gene expression and nonspecific resistance to Salmonella-induced typhoid-like disease

Vijay-Kumar, M., Aitken, J. D., Kumar, A., Neish, A. S., Uematsu, S., Akira, S. & Gewirtz, A. T., Mar 1 2008, In : Infection and Immunity. 76, 3, p. 1276-1281 6 p.

Research output: Contribution to journalArticle

44 Scopus citations

Toll-like receptor-gut microbiota interactions: Perturb at your own risk!

Carvalho, F. A., Aitken, J. D., Kumar, M. V. & Gewirtz, A. T., Feb 27 2012, In : Annual review of physiology. 74, p. 177-198 22 p.

Research output: Contribution to journalArticle

94 Scopus citations

Too fast for catalysis

Liu, C. T., Stewart, R. J. & Benkovic, S., Sep 1 2013, In : Biocatalysis and Biotransformation. 31, 5, p. 269-271 3 p.

Research output: Contribution to journalArticle

1 Scopus citations

Topical rectal antiseptic at time of prostate biopsy: how a resident patient safety project has evolved into institutional practice

Park, R., Gyorfi, J., Dewan, K., Kirimanjeswara, G. S., Clark, J. Y., Kaag, M. G., Lehman, K. & Raman, J., Sep 1 2018, In : International Urology and Nephrology. 50, 9, p. 1563-1568 6 p.

Research output: Contribution to journalArticle

10 Scopus citations

Total synthesis of (+)-schweinfurthins B and E

Topczewski, J. J., Neighbors, J. D. & Wiemer, D. F., Sep 18 2009, In : Journal of Organic Chemistry. 74, 18, p. 6965-6972 8 p.

Research output: Contribution to journalArticle

45 Scopus citations

Total synthesis of (R,R,R)- and (S,S,S)-schweinfurthin F: Differences of bioactivity in the enantiomeric series

Mente, N. R., Wiemer, A. J., Neighbors, J. D., Beutler, J. A., Hohl, R. J. & Wiemer, D. F., Feb 15 2007, In : Bioorganic and Medicinal Chemistry Letters. 17, 4, p. 911-915 5 p.

Research output: Contribution to journalArticle

33 Scopus citations

Total synthesis of pawhuskin C: A directed ortho metalation approach

Neighbors, J. D., Salnikova, M. S. & Wiemer, D. F., Feb 21 2005, In : Tetrahedron Letters. 46, 8, p. 1321-1324 4 p.

Research output: Contribution to journalArticle

23 Scopus citations

Total synthesis of Δ¹²-prostaglandin J₃, a highly potent and selective antileukemic agent

Nicolaou, K. C., Heretsch, P., ElMarrouni, A., Hale, C. R. H., Pulukuri, K. K., Kudva, A. K., Narayan, V. & Prabhu, K. S., Sep 22 2014, In : Angewandte Chemie (International ed. in English). 53, 39, p. 10443-10447 5 p.

Research output: Contribution to journalArticle

21 Scopus citations

Toward quantitative interpretation of methyl side-chain dynamics from NMR by molecular dynamics simulations

Showalter, S. A., Johnson, E., Rance, M. & Brüschweiler, R., Nov 21 2007, In : Journal of the American Chemical Society. 129, 46, p. 14146-14147 2 p.

Research output: Contribution to journalArticle

56 Scopus citations

TP-RT domain interactions of duck hepatitis B virus reverse transcriptase in cis and in trans during protein-primed initiation of DNA synthesis in vitro

Boregowda, R. K., Adams, C. & Hu, J., Jul 1 2012, In : Journal of virology. 86, 12, p. 6522-6536 15 p.

Research output: Contribution to journalArticle

6 Scopus citations

Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly

Alley, S. C., Abel-Santos, E. & Benkovic, S. J., Mar 21 2000, In : Biochemistry. 39, 11, p. 3076-3090 15 p.

Research output: Contribution to journalArticle

51 Scopus citations

Tracking vaginal, anal and oral infection in a mouse papillomavirus infection model

Hu, J., Budgeon, L. R., Cladel, N. M., Balogh, K., Myers, R., Cooper, T. K. & Christensen, N. D., Dec 2015, In : Journal of General Virology. 96, 12, p. 3554-3565 12 p.

Research output: Contribution to journalArticle

11 Scopus citations

trans-acting inhibition of genomic RNA dimerization by Rous sarcoma virus matrix mutants

Garbitt, R. A., Albert, J. A., Kessler, M. D. & Parent, L. J., Jan 1 2001, In : Journal of virology. 75, 1, p. 260-268 9 p.

Research output: Contribution to journalArticle

26 Scopus citations