Research Output

Filter
Article

Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly

Alley, S. C., Abel-Santos, E. & Benkovic, S. J., Mar 21 2000, In : Biochemistry. 39, 11, p. 3076-3090 15 p.

Research output: Contribution to journalArticle

51 Scopus citations

Tracking vaginal, anal and oral infection in a mouse papillomavirus infection model

Hu, J., Budgeon, L. R., Cladel, N. M., Balogh, K., Myers, R., Cooper, T. K. & Christensen, N. D., Dec 2015, In : Journal of General Virology. 96, 12, p. 3554-3565 12 p.

Research output: Contribution to journalArticle

11 Scopus citations

trans-acting inhibition of genomic RNA dimerization by Rous sarcoma virus matrix mutants

Garbitt, R. A., Albert, J. A., Kessler, M. D. & Parent, L. J., Jan 1 2001, In : Journal of virology. 75, 1, p. 260-268 9 p.

Research output: Contribution to journalArticle

26 Scopus citations

Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites

Stoner, M. A., Auerbach, S. S., Zamule, S. M., Strom, S. C. & Omiecinski, C. J., Apr 1 2007, In : Nucleic acids research. 35, 7, p. 2177-2190 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Transactivation of the human endogenous retrovirus K long terminal repeat by herpes simplex virus type 1 immediate early protein 0

Kwun, H. J., Han, H. J., Lee, W. J., Kim, H. S. & Jang, K. L., Jun 29 2002, In : Virus Research. 86, 1-2, p. 93-100 8 p.

Research output: Contribution to journalArticle

40 Scopus citations

trans-Complementation of HBV rtM204I mutant replication by HBV wild-type polymerase

Heipertz, R. A., Starkey, J. L., Miller, T. G., Hu, J. & Isom, H. C., May 25 2009, In : Virology. 388, 1, p. 57-67 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both α and σ70 subunits of Escherichia coli RNA polymerase

Artsimovitch, I., Murakami, K., Ishihama, A. & Howe, M. M., Dec 30 1996, In : Journal of Biological Chemistry. 271, 50, p. 32343-32348 6 p.

Research output: Contribution to journalArticle

43 Scopus citations

Transcriptional and translational control of ornithine decarboxylase during Ras transformation

Shantz, L. M., Jan 1 2004, In : Biochemical Journal. 377, 1, p. 257-264 8 p.

Research output: Contribution to journalArticle

37 Scopus citations

Transcriptional Control of Expression of the TGF‐βs

ROBERTS, ANITA. B., KIM, SEONGJIN. J., KONDAIAH, PATURU., JAKOWLEW, SONIA. B., DENHEZ, FABIENNE., Glick, A. B., GEISER, ANDREW. G., WATANABE, SHINICHI., NOMA, TAKAFUMI., LECHLEIDER, ROBERT. & SPORN, MICHAEL. B., Jan 1 1990, In : Annals of the New York Academy of Sciences. 593, 1, p. 43-50 8 p.

Research output: Contribution to journalArticle

33 Scopus citations

Transcriptional network governing the angiogenic switch in human pancreatic cancer

Abdollahi, A., Schwager, C., Kleeff, J., Esposito, I., Domhan, S., Peschke, P., Hauser, K., Hahnfeldt, P., Hlatky, L., Debus, J., Peters, J. M., Friess, H., Folkman, J. & Huber, P. E., Jul 31 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 31, p. 12890-12895 6 p.

Research output: Contribution to journalArticle

150 Scopus citations

Transcriptional regulation of herpes simplex virus type 1 ICP0 promoter by virion protein 16

Kwun, H. J. & Jang, K. L., Jan 2000, In : Molecular Cell Biology Research Communications. 3, 1, p. 15-19 5 p.

Research output: Contribution to journalArticle

3 Scopus citations

Transcriptional Regulation of the VP16 Gene of Herpes Simplex Virus Type 1

Kwun, H. J., Jun, H. K., Lee, T. H. & Jang, K. L., Sep 30 1999, In : Journal of Biochemistry and Molecular Biology. 32, 5, p. 456-460 5 p.

Research output: Contribution to journalArticle

Transcriptional regulatory properties of Epstein-Barr virus nuclear antigen 3C are conserved in simian lymphocryptoviruses

Zhao, B., Dalbiès-Tran, R., Jiang, H., Ruf, I. K., Sample, J. T., Wang, F. & Sample, C. E., May 1 2003, In : Journal of virology. 77, 10, p. 5639-5648 10 p.

Research output: Contribution to journalArticle

23 Scopus citations

Transcriptional repression of cyclin-dependent kinase inhibitor p21 gene by phospholipase D1 and D2

Kwun, H. J., Lee, J. H., Min, D. S. & Jang, K. L., Jun 5 2003, In : FEBS Letters. 544, 1-3, p. 38-44 7 p.

Research output: Contribution to journalArticle

15 Scopus citations

Transcriptional repression of p21waf1 promoter by hepatitis B virus X protein via a p53-independent pathway

Ahn, J. Y., Chung, E. Y., Kwun, H. J. & Jang, K. L., Sep 5 2001, In : Gene. 275, 1, p. 163-168 6 p.

Research output: Contribution to journalArticle

48 Scopus citations

Transcription factor binding site identification using the self-organizing map

Mahony, S., Hendrix, D., Golden, A., Smith, T. J. & Rokhsar, D. S., May 1 2005, In : Bioinformatics. 21, 9, p. 1807-1814 8 p.

Research output: Contribution to journalArticle

59 Scopus citations

Transcription factor recognition surface on the RNA polymerase α subunit is involved in contact with the DNA enhancer element

Murakami, K., Fujita, N. & Ishihama, A., Aug 15 1996, In : EMBO Journal. 15, 16, p. 4358-4367 10 p.

Research output: Contribution to journalArticle

102 Scopus citations

Transcription from a TATA-less promoter requires a multisubunit TFIID complex

Pugh, B. F. & Tjian, R., Jan 1 1991, In : Genes and Development. 5, 11, p. 1935-1945 11 p.

Research output: Contribution to journalArticle

451 Scopus citations

Transcription from the second heavy-strand promoter of human mtDNA is repressed by transcription factor A in vitro

Lodeiro, M. F., Uchida, A., Bestwick, M., Moustafa, I., Arnold, J. J., Shadel, G. S. & Cameron, C. E., Apr 24 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 17, p. 6513-6518 6 p.

Research output: Contribution to journalArticle

37 Scopus citations

Transcription of the Epstein-Barr virus genome during latency in growth-transformed lymphocytes

Sample, J. & Kieff, E., Jan 1 1990, In : Journal of virology. 64, 4, p. 1667-1674 8 p.

Research output: Contribution to journalArticle

53 Scopus citations

Transcription start sites downstream of the Epstein-Barr virus (EBV) Fp promoter in early-passage Burkitt lymphoma cells define a fourth promoter for expression of the EBV EBNA-1 protein

Nonkwelo, C., Skinner, J., Bell, A., Rickinson, A. & Sample, J., Dec 1 1996, In : Journal of Virology. 70, 1, p. 623-627 5 p.

Research output: Contribution to journalArticle

112 Scopus citations

Transcriptomes of the B and T Lineages Compared by Multiplatform Microarray Profiling

Painter, M. W., Davis, S., Hardy, R. R., Mathis, D., Benoist, C., Zhou, Y., Shinton, S., Asinovski, N., Ergun, A., Ericson, J., Heng, T., Hill, J., Hyatt, G., Gray, D., Laplace, C., Ortiz-Lopez, A., Bellemare-Pelletier, A., Elpek, K., Turley, S., Best, A. & 26 others, Knell, J., Goldrath, A., Sun, J., Bezman, N., Lanier, L., Bogunovic, M., Helft, J., Sachidanandam, R., Merad, M., Jakubzick, C., Gautier, E., Randolph, G., Cohen, N., Brenner, M., Collins, J., Costello, J., Jianu, R., Laidlaw, D., Jojic, V., Koller, D., Malhotra, N., Sylvia, K., Narayan, K., Kang, J., Shay, T. & Regev, A., Mar 1 2011, In : Journal of Immunology. 186, 5, p. 3047-3057 11 p.

Research output: Contribution to journalArticle

61 Scopus citations

Transferrin receptor binds virus capsid with dynamic motion

Lee, H., Callaway, H. M., Cifuente, J. O., Bator, C. M., Parrish, C. R. & Hafenstein, S. L., Oct 8 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 41, p. 20462-20471 10 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Transforming growth factor β1 (TGFβ1) down-regulates expression and function of proliferation-inducing molecules in HPV-transformed cells

Shier, M. K., Neely, E. B., Ward, M. G., Meyers, C. & Howett, M. K., Nov 1 1999, In : Anticancer Research. 19, 6 B, p. 4977-4982 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Transforming growth factor β1 enhances tumor promotion in mouse skin carcinogenesis

Pérez-Lorenzo, R., Markell, L. M., Hogan, K. A., Yuspa, S. H. & Glick, A. B., Feb 19 2010, In : Carcinogenesis. 31, 6, p. 1116-1123 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

Transforming growth factor β1 induces differentiation in human papillomavirus-positive keratinocytes

Ozbun, M. A. & Meyers, C., Aug 1 1996, In : Journal of virology. 70, 8, p. 5437-5446 10 p.

Research output: Contribution to journalArticle

41 Scopus citations

Transforming growth factor β1 suppresses genomic instability independent of a G1 arrest, p53, and Rb

Glick, A. B., Weinberg, W. C., Wu, I. H., Quan, W. & Yuspa, S. H., Aug 15 1996, In : Cancer Research. 56, 16, p. 3645-3650 6 p.

Research output: Contribution to journalArticle

96 Scopus citations

Transgenic expression of interleukin-13 in the skin induces a pruritic dermatitis and skin remodeling

Zheng, T., Oh, M. H., Oh, S. Y., Schroeder, J. T., Glick, A. B. & Zhu, Z., Mar 1 2009, In : Journal of Investigative Dermatology. 129, 3, p. 742-751 10 p.

Research output: Contribution to journalArticle

115 Scopus citations

Transgenic expression of survivin compensates for OX40-deficiency in driving Th2 development and allergic inflammation

Lei, F., Song, J., Haque, R., Xiong, X., Fang, D., Wu, Y., Lens, S. M. A., Croft, M. & Song, J., Jul 1 2013, In : European Journal of Immunology. 43, 7, p. 1914-1924 11 p.

Research output: Contribution to journalArticle

10 Scopus citations

Transgenic mouse models for studies of the role of polyamines in normal, hypertrophic and neoplastic growth

Pegg, A. E., Feith, D. J., Fong, L. Y. Y., Coleman, C. S., O'Brien, T. G. & Shantz, L. M., Apr 1 2003, In : Biochemical Society transactions. 31, 2, p. 356-360 5 p.

Research output: Contribution to journalArticle

67 Scopus citations

Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice

Carvalho, F. A., Koren, O., Goodrich, J. K., Johansson, M. E. V., Nalbantoglu, I., Aitken, J. D., Su, Y., Chassaing, B., Walters, W. A., González, A., Clemente, J. C., Cullender, T. C., Barnich, N., Darfeuille-Michaud, A., Vijay-Kumar, M., Knight, R., Ley, R. E. & Gewirtz, A. T., Aug 16 2012, In : Cell Host and Microbe. 12, 2, p. 139-152 14 p.

Research output: Contribution to journalArticle

222 Scopus citations
9 Scopus citations

Transient tertiary structure formation within the ribosome exit port

O'Brien, E. P., Hsu, S. T. D., Christodoulou, J., Vendruscolo, M. & Dobson, C. M., Dec 1 2010, In : Journal of the American Chemical Society. 132, 47, p. 16928-16937 10 p.

Research output: Contribution to journalArticle

50 Scopus citations

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome

Albert, I., Mavrich, T. N., Tomsho, L. P., Qi, J., Zanton, S. J., Schuster, S. C. & Pugh, B. F., Mar 29 2007, In : Nature. 446, 7135, p. 572-576 5 p.

Research output: Contribution to journalArticle

477 Scopus citations

Translational control: Implications for skeletal muscle hypertrophy

Nader, G. A., Hornberger, T. A. & Esser, K. A., Oct 1 2002, In : Clinical orthopaedics and related research. 403 SUPPL., p. S178-S187

Research output: Contribution to journalArticle

39 Scopus citations

trans-lesion synthesis past bulky benzo[a]pyrene diol epoxide N2-dG and N6-dA lesions catalyzed by DNA bypass polymerases

Rechkoblit, O., Zhang, Y., Guo, D., Wang, Z., Amin, S., Krzeminsky, J., Louneva, N. & Geacintov, N. E., Aug 23 2002, In : Journal of Biological Chemistry. 277, 34, p. 30488-30494 7 p.

Research output: Contribution to journalArticle

158 Scopus citations

Trans-regulation of histone deacetylase activities through acetylation

Luo, Y., Jian, W., Stavreva, D., Fu, X., Hager, G., Bungert, J., Huang, S. & Qiu, Y., Dec 11 2009, In : Journal of Biological Chemistry. 284, 50, p. 34901-34910 10 p.

Research output: Contribution to journalArticle

43 Scopus citations

trans-repression of protein expression dependent on the Epstein-Barr virus promoter Wp during latency

Hughes, D. J., Dickerson, C. A., Shaner, M. S., Sample, C. E. & Sample, J. T., Nov 1 2011, In : Journal of virology. 85, 21, p. 11435-11447 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Trastuzumab signaling in ErbB2-overexpressing inflammatory breast cancer correlates with X-linked inhibitor of apoptosis protein expression

Aird, K. M., Ding, X., Baras, A., Wei, J., Morse, M. A., Clay, T., Lyerly, H. K. & Devi, G. R., Jan 1 2008, In : Molecular cancer therapeutics. 7, 1, p. 38-47 10 p.

Research output: Contribution to journalArticle

57 Scopus citations
11 Scopus citations
Open Access
5 Scopus citations

Tree-guided Bayesian inference of population structures

Zhang, Y., Apr 1 2008, In : Bioinformatics. 24, 7, p. 965-971 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Trigger factor slows Co-translational folding through kinetic trapping while sterically protecting the nascent chain from aberrant cytosolic interactions

O'Brien, E. P., Christodoulou, J., Vendruscolo, M. & Dobson, C. M., Jul 4 2012, In : Journal of the American Chemical Society. 134, 26, p. 10920-10932 13 p.

Research output: Contribution to journalArticle

48 Scopus citations

TRIM21 is a novel regulator of Par-4 in colon and pancreatic cancer cells

Nguyen, J. Q. & Irby, R. B., Jan 2 2017, In : Cancer Biology and Therapy. 18, 1, p. 16-25 10 p.

Research output: Contribution to journalArticle

10 Scopus citations

Triphosphate reorientation of the incoming nucleotide as a fidelity checkpoint in viral RNA-dependent RNA Polymerases

Yang, X., Liu, X., Musser, D. M., Moustafa, I. M., Arnold, J. J., Cameron, C. E. & Boehr, D. D., Mar 3 2017, In : Journal of Biological Chemistry. 292, 9, p. 3810-3826 17 p.

Research output: Contribution to journalArticle

7 Scopus citations

Tristetraprolin targets Nos2 expression in the colonic epithelium

Eshelman, M. A., Matthews, S. M., Schleicher, E. M., Fleeman, R. M., Kawasawa, Y. I., Stumpo, D. J., Blackshear, P. J., Koltun, W. A., Ishmael, F. T. & Yochum, G. S., Dec 1 2019, In : Scientific reports. 9, 1, 14413.

Research output: Contribution to journalArticle

Open Access

TRPM2 channels protect against cardiac ischemia-reperfusion injury: Role of mitochondria

Miller, B. A., Hoffman, N. E., Merali, S., Zhang, X. Q., Wang, J. F., Rajan, S., Shanmughapriya, S., Gao, E., Barrero, C. A., Mallilankaraman, K., Song, J., Gu, T., Hirschler-Laszkiewicz, I., Koch, W. J., Feldman, A. M., Madesh, M. & Cheung, J. Y., Mar 14 2014, In : Journal of Biological Chemistry. 289, 11, p. 7615-7629 15 p.

Research output: Contribution to journalArticle

52 Scopus citations

Trpm2 enhances physiological bioenergetics and protects against pathological oxidative cardiac injury: Role of Pyk2 phosphorylation

Miller, B. A., Wang, J. F., Song, J., Zhang, X. Q., Hirschler-Laszkiewicz, I., Shanmughapriya, S., Tomar, D., Rajan, S., Feldman, A. M., Madesh, M., Sheu, S. S. & Cheung, J. Y., Sep 2019, In : Journal of Cellular Physiology. 234, 9, p. 15048-15060 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Truncating α-Helix E′ of p66 human immunodeficiency virus reverse transcriptase modulates RNase H function and impairs DNA strand transfer

Ghosh, M., Howard, K. J., Cameron, C. E., Benkovic, S. J., Hughes, S. H. & Le Grice, S. F. J., Mar 31 1995, In : Journal of Biological Chemistry. 270, 13, p. 7068-7076 9 p.

Research output: Contribution to journalArticle

48 Scopus citations