Research Output 1963 2019

4 Citations (Scopus)

common and distinct capsid and surface protein requirements for secretion of complete and genome-free hepatitis B virions

Ning, X., Luckenbaugh, L., Liu, K., Bruss, V., Sureau, C. & Hu, J., Jul 1 2018, In : Journal of virology. 92, 14, e00272-18.

Research output: Contribution to journalArticle

protein requirement
hepatitis B
surface proteins
Capsid Proteins
coat proteins
DNA Damage
Epoxy Compounds
3 Citations (Scopus)

Complex and dynamic interactions between parvovirus capsids, transferrin receptors, and antibodies control cell infection and host range

Callaway, H. M., Welsch, K., Weichert, W., Allison, A. B., Hafenstein, S., Huang, K., Iketani, S. & Parrish, C. R., Jul 1 2018, In : Journal of virology. 92, 13, e00460-18.

Research output: Contribution to journalArticle

Transferrin Receptors
6 Citations (Scopus)

Creating cross-linked lamellar block copolymer supporting layers for biomimetic membranes

Lang, C., Shen, Y. X., LaNasa, J. A., Ye, D., Song, W., Zimudzi, T., Hickner, M. A., Gomez, E. D., Gomez, E. W., Kumar, M. & Hickey, III, R. J., Jan 1 2018, In : Faraday Discussions. 209, p. 179-191 13 p.

Research output: Contribution to journalArticle

block copolymers
Block copolymers
17 Citations (Scopus)

Cross-linking of Orai1 channels by STIM proteins

Zhou, Y., Nwokonko, R. M., Cai, X., Loktionova, N. A., Abdulqadir, R., Xin, P., Niemeyer, B. A., Wang, Y., Trebak, M. & Gill, D., Jan 1 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 15, p. E3398-E3407

Research output: Contribution to journalArticle

Endoplasmic Reticulum
Cell Membrane
Cluster Analysis
Fluorescence Recovery After Photobleaching
Protein Unfolding
5 Citations (Scopus)

Cryo-EM structure of Escherichia coli 70 RNA polymerase and promoter DNA complex revealed a role of non-conserved region during the open complex formation

Narayanan, A., Vago, F. S., Li, K., Qayyum, M. Z., Yernool, D., Jiang, W. & Murakami, K., Jan 1 2018, In : Journal of Biological Chemistry. 293, 19, p. 7367-7375 9 p.

Research output: Contribution to journalArticle

DNA-Directed RNA Polymerases
Escherichia coli
5 Citations (Scopus)

CTCF boundary remodels chromatin domain and drives aberrant HOX gene transcription in acute myeloid leukemia

Luo, H., Wang, F., Zha, J., Li, H., Yan, B., Du, Q., Yang, F., Sobh, A., Vulpe, C., Drusbosky, L., Cogle, C., Chepelev, I., Xu, B., Nimer, S. D., Licht, J., Qiu, Y., Chen, B., Xu, M. & Huang, S., Aug 23 2018, In : Blood. 132, 8, p. 837-848 12 p.

Research output: Contribution to journalArticle

Acute Myeloid Leukemia
Gene expression
1 Citation (Scopus)

D1 dopamine receptors intrinsic activity and functional selectivity affect working memory in prefrontal cortex

Yang, Y., Lee, S. M., Imamura, F., Gowda, K., Amin, S. & Mailman, R., Jan 1 2018, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

Prefrontal Cortex
Short-Term Memory
Adenylyl Cyclases
5 Citations (Scopus)

Dehydration-induced physical strains of cellulose microfibrils in plant cell walls

Huang, S., Makarem, M., Kiemle, S., Zheng, Y., He, X., Ye, D., Gomez, E. W., Gomez, E. D., Cosgrove, D. J. & Kim, S., Oct 1 2018, In : Carbohydrate Polymers. 197, p. 337-348 12 p.

Research output: Contribution to journalArticle

Plant Cells
Vibrational spectra
4 Citations (Scopus)

Design and synthesis of novel thiobarbituric acid derivatives targeting both wild-type and BRAF-mutated melanoma cells

Ramisetti, S. R., Pandey, M. K., Lee, S., Karelia, D., Narayan, S., Amin, S. & Sharma, A., Jan 1 2018, In : European Journal of Medicinal Chemistry. 143, p. 1919-1930 12 p.

Research output: Contribution to journalArticle

Cell death
1 Citation (Scopus)

Detection of adulteration in Hydrastis canadensis (goldenseal) dietary supplements via untargeted mass spectrometry-based metabolomics

Wallace, E. D., Oberlies, N. H., Cech, N. B. & Kellogg, J., Oct 1 2018, In : Food and Chemical Toxicology. 120, p. 439-447 9 p.

Research output: Contribution to journalArticle

Open Access
Hydrastis canadensis
Dietary supplements
adulterated products
2 Citations (Scopus)
protein synthesis
Protein Synthesis
2 Citations (Scopus)

Discovery of Enterovirus A71-like nonstructural genomes in recent circulating viruses of the Enterovirus A species

Lee, K. M., Gong, Y. N., Hsieh, T. H., Woodman, A., Dekker, N. H., Cameron, C. E. & Shih, S. R., Dec 1 2018, In : Emerging Microbes and Infections. 7, 1, 111.

Research output: Contribution to journalArticle

Genetic Recombination
4 Citations (Scopus)

DNA polymerase eta prevents tumor cell-cycle arrest and cell death during recovery from replication stress

Barnes, R. P., Tsao, W. C., Moldovan, G-L. & Eckert, K., Dec 1 2018, In : Cancer Research. 78, 23, p. 6549-6560 12 p.

Research output: Contribution to journalArticle

Cell Cycle Checkpoints
Cell Death
Genomic Instability
Cell Survival
37 Citations (Scopus)

Dysregulated Microbial Fermentation of Soluble Fiber Induces Cholestatic Liver Cancer

Singh, V., Yeoh, B. S., Chassaing, B., Xiao, X., Saha, P., Aguilera Olvera, R., Lapek, J. D., Zhang, L., Wang, W., Hao, S., Flythe, M. D., Gonzalez, D. J., Cani, P. D., Conejo-Garcia, J. R., Xiong, N., Kennett, M. J., Joe, B., Patterson, A. D., Gewirtz, A. T. & Vijay-Kumar, M., Oct 18 2018, In : Cell. 175, 3, p. 679-694.e22

Research output: Contribution to journalArticle

Liver Neoplasms
Hepatocellular Carcinoma
7 Citations (Scopus)

Dysregulation of mitochondrial bioenergetics and quality control by HIV-1 Tat in cardiomyocytes

Tahrir, F. G., Santhanam, S., Ahooyi, T. M., Knezevic, T., Gupta, M. K., Kontos, C. D., McClung, J. M., Madesh, M., Gordon, J., Feldman, A. M., Cheung, J. Y. & Khalili, K., Feb 1 2018, In : Journal of Cellular Physiology. 233, 2, p. 748-758 11 p.

Research output: Contribution to journalArticle

Cardiac Myocytes
Quality Control
Energy Metabolism
Quality control
7 Citations (Scopus)

Effect of productive human papillomavirus 16 infection on global gene expression in cervical epithelium

Kang, S. D., Chatterjee, S., Alam, S., Salzberg, A. C., Milici, J., Van Der Burg, S. H. & Meyers, C., Oct 1 2018, In : Journal of virology. 92, 20, e01261.

Research output: Contribution to journalArticle

Human papillomavirus 16
Papillomavirus Infections
Gene Expression
3 Citations (Scopus)

Effects of Black Raspberry on Dibenzo[a,l]Pyrene Diol Epoxide Induced DNAAdducts, Mutagenesis, and Tumorigenesis in the Mouse Oral Cavity

Chen, K-M., Guttenplan, J. B., Sun, Y-W., Cooper, T., Shalaby, N. A. E., Kosinska, W., Benitez, G., Aliaga, C., Zhu, J., Liao, J. J., Gowda, K., Amin, S., Stoner, G. & El-Bayoumy, K., Mar 1 2018, In : Cancer Prevention Research. 11, 3, p. 157-164 8 p.

Research output: Contribution to journalArticle

DNA Damage
1 Citation (Scopus)

Electron mass enhancement and magnetic phase separation near the Mott transition in double-layer ruthenates

Peng, J., Gu, X. M., Zhou, G. T., Wang, W., Liu, J. Y., Wang, Y., Mao, Z. Q., Wu, X. S. & Dong, S., 2018, In : Frontiers of Physics. 13, 4

Research output: Contribution to journalArticle

Magnetic separation
electron mass
Phase Separation
Specific Heat
Phase separation
2 Citations (Scopus)

Erythromycin leads to differential protein expression through differences in electrostatic and dispersion interactions with nascent proteins

Nguyen, H. L., Pham, D. L., O'Brien, E. P. & Li, M. S., Dec 1 2018, In : Scientific reports. 8, 1, 6460.

Research output: Contribution to journalArticle

Static Electricity
2 Citations (Scopus)
Thyroid Neoplasms
9 Citations (Scopus)

Expression of programmed death-ligand 1 by human colonic CD90+ stromal cells differs between ulcerative colitis and Crohn's disease and determines their capacity to suppress Th1 cells

Beswick, E. J., Grim, C., Singh, A., Aguirre, J. E., Tafoya, M., Qiu, S., Rogler, G., McKee, R., Samedi, V., Ma, T. Y., Reyes, V. E., Powell, D. W. & Pinchuk, I. V., May 30 2018, In : Frontiers in immunology. 9, MAY, 1125.

Research output: Contribution to journalArticle

Th1 Cells
Stromal Cells
Ulcerative Colitis
Crohn Disease
2 Citations (Scopus)

Expression of the purine biosynthetic enzyme phosphoribosyl formylglycinamidine synthase in neurons

Mangold, C. A., Yao, P. J., Du, M., Freeman, W. M., Benkovic, S. & Szpara, M. L., Mar 1 2018, In : Journal of neurochemistry. 144, 6, p. 723-735 13 p.

Research output: Contribution to journalArticle

Virus Diseases
4 Citations (Scopus)

Familial isolated primary hyperparathyroidism associated with germline GCM2 mutations is more aggressive and has a lesser rate of biochemical cure

El Lakis, M., Nockel, P., Guan, B., Agarwal, S., Welch, J., Simonds, W. F., Marx, S., Li, Y., Nilubol, N., Patel, D., Yang, L., Merkel, R. & Kebebew, E., Jan 1 2018, In : Surgery (United States). 163, 1, p. 31-34 4 p.

Research output: Contribution to journalArticle

Primary Hyperparathyroidism
Germ-Line Mutation
Parathyroid Neoplasms
Parathyroid Hormone
Sex Distribution
65 Citations (Scopus)

Fiber-Mediated Nourishment of Gut Microbiota Protects against Diet-Induced Obesity by Restoring IL-22-Mediated Colonic Health

Zou, J., Chassaing, B., Singh, V., Pellizzon, M., Ricci, M., Fythe, M. D., Kumar, M. V. & Gewirtz, A. T., Jan 10 2018, In : Cell Host and Microbe. 23, 1, p. 41-53.e4

Research output: Contribution to journalArticle


Fibroepithelial Stromal Polyp of the Vulva: Case Report and Review of Potential Histologic Mimickers

Pharaon, M., Warrick, J. & Lynch, M. C., Jan 1 2018, In : International Journal of Gynecological Pathology. 37, 4, p. e1-e5

Research output: Contribution to journalArticle

Connective Tissue
Differential Diagnosis
5 Citations (Scopus)

Foot-and-mouth disease virus type O specific mutations determine RNA-dependent RNA polymerase fidelity and virus attenuation

Li, C., Wang, H., Yuan, T., Woodman, A., Yang, D., Zhou, G., Cameron, C. E. & Yu, L., May 2018, In : Virology. 518, p. 87-94 8 p.

Research output: Contribution to journalArticle

RNA Replicase
Foot-and-Mouth Disease Virus
RNA Viruses
Amino Acid Substitution
1 Citation (Scopus)

FOXD1-dependent MICU1 expression regulates mitochondrial activity and cell differentiation

Santhanam, S., Tomar, D., Dong, Z., Slovik, K. J., Nemani, N., Natarajaseenivasan, K., Carvalho, E., Lu, C., Corrigan, K., Garikipati, V. N. S., Ibetti, J., Rajan, S., Barrero, C., Chuprun, K., Kishore, R., Merali, S., Tian, Y., Yang, W. & Madesh, M., Dec 1 2018, In : Nature communications. 9, 1, 3449.

Research output: Contribution to journalArticle

Open Access
stem cells
Stem cells
Cell Differentiation
Induced Pluripotent Stem Cells
2 Citations (Scopus)

Frozen Section as a Rapid and Accurate Method for Diagnosing Acute Invasive Fungal Rhinosinusitis

Hennessy, M., McGinn, J., White, B., Payne, S., Warrick, J. & Crist, H., Sep 1 2018, In : Otolaryngology - Head and Neck Surgery (United States). 159, 3, p. 576-580 5 p.

Research output: Contribution to journalArticle

Frozen Sections
Coloring Agents
Sensitivity and Specificity
4 Citations (Scopus)

Genome-wide determinants of sequence-specific DNA binding of general regulatory factors

Rossi, M., Lai, W. & Pugh, B. F., Apr 1 2018, In : Genome research. 28, 4, p. 497-508 12 p.

Research output: Contribution to journalArticle

Genetic Promoter Regions
Consensus Sequence
Chromosome Mapping
11 Citations (Scopus)

Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition

Shastri, N., Tsai, Y. C., Hile, S., Jordan, D., Powell, B., Chen, J., Maloney, D., Dose, M., Lo, Y., Anastassiadis, T., Rivera, O., Kim, T., Shah, S., Borole, P., Asija, K., Wang, X., Smith, K. D., Finn, D., Schug, J., Casellas, R. & 3 others, Yatsunyk, L. A., Eckert, K. & Brown, E. J., Oct 18 2018, In : Molecular cell. 72, 2, p. 222-238.e11

Research output: Contribution to journalArticle

Replication Protein A
DNA Replication
Microsatellite Repeats
5 Citations (Scopus)

Genome-wide mapping of decay factor-mRNA interactions in yeast identifies nutrient-responsive transcripts as targets of the deadenylase Ccr4

Miller, J. E., Zhang, L., Jiang, H., Li, Y., Pugh, B. F. & Reese, J. C., Jan 1 2018, In : G3: Genes, Genomes, Genetics. 8, 1, p. 315-330 16 p.

Research output: Contribution to journalArticle

Catabolite Repression
Chromosome Mapping
RNA Stability

GPx3 supports ovarian cancer progression by manipulating the extracellular redox environment

Worley, B. L., Kim, Y. S., Mardini, J., Zaman, R., Leon, K. E., Vallur, P. G., Nduwumwami, A., Warrick, J., Timmins, P. F., Kesterson, J., Phaeton, R., Lee, N. Y., Walter, V., Endres, L., Mythreye, K., Aird, K. & Hempel, N., Jan 1 2018, (Accepted/In press) In : Redox Biology.

Research output: Contribution to journalArticle

Glutathione Peroxidase
Ovarian Neoplasms
2 Citations (Scopus)

Graviola (Annona muricata) exerts anti-proliferative, anti-clonogenic and pro-apoptotic effects in human non-melanoma skin cancer UW-BCC1 and A431 cells in vitro: Involvement of hedgehog signaling

Chamcheu, J. C., Rady, I., Chamcheu, R. C. N., Siddique, A. B., Bloch, M. B., Mbeumi, S. B., Babatunde, A. S., Uddin, M. B., Noubissi, F. K., Jurutka, P. W., Liu, Y. Y., Spiegelman, V. S., Whitfield, G. K. & El Sayed, K. A., Jun 16 2018, In : International journal of molecular sciences. 19, 6, 1791.

Research output: Contribution to journalArticle

Skin Neoplasms
45 Citations (Scopus)

Gut microbiota and intestinal FXR mediate the clinical benefits of metformin

Sun, L., Xie, C., Wang, G., Wu, Y., Wu, Q., Wang, X., Liu, J., Deng, Y., Xia, J., Chen, B., Zhang, S., Yun, C., Lian, G., Zhang, X., Zhang, H., Bisson, W. H., Shi, J., Gao, X., Ge, P., Liu, C. & 8 others, Krausz, K. W., Nichols, R. G., Cai, J., Rimal, B., Patterson, A. D., Wang, X., Gonzalez, F. J. & Jiang, C., Dec 1 2018, In : Nature Medicine. 24, 12, p. 1919-1929 11 p.

Research output: Contribution to journalArticle

Bacteroides fragilis
Glucose Intolerance
8 Citations (Scopus)

Hepatitis B virus core protein dephosphorylation occurs during pregenomic RNA encapsidation

Zhao, Q., Hu, Z., Cheng, J., Wu, S., Luo, Y., Chang, J., Hu, J. & Guo, J. T., Jul 1 2018, In : Journal of virology. 92, 13, e02139-17.

Research output: Contribution to journalArticle

Viral Core Proteins
Hepatitis B virus
17 Citations (Scopus)

High Level of Neutrophil Extracellular Traps Correlates with Poor Prognosis of Severe Influenza A Infection

Zhu, L., Liu, L., Zhang, Y., Pu, L., Liu, J., Li, X., Chen, Z., Hao, Y., Wang, B., Han, J., Li, G., Liang, S., Xiong, H., Zheng, H., Li, A., Xu, J. & Zeng, H., Jan 17 2018, In : Journal of Infectious Diseases. 217, 3, p. 428-437 10 p.

Research output: Contribution to journalArticle

Human Influenza
Multiple Organ Failure
Influenza A virus
6 Citations (Scopus)

Hijacking of multiple phospholipid biosynthetic pathways and induction of membrane biogenesis by a picornaviral 3CD protein

Banerjee, S., Aponte-Diaz, D., Yeager, C., Sharma, S. D., Ning, G., Oh, H. S., Han, Q., Umeda, M., Hara, Y., Wang, R. Y. L. & Cameron, C. E., May 1 2018, In : PLoS pathogens. 14, 5, e1007086.

Research output: Contribution to journalArticle

Biosynthetic Pathways
Viral Proteins
5 Citations (Scopus)

Human ISL1 + Ventricular Progenitors Self-Assemble into an In Vivo Functional Heart Patch and Preserve Cardiac Function Post Infarction

Foo, K. S., Lehtinen, M. L., Leung, C. Y., Lian, X., Xu, J., Keung, W., Geng, L., Kolstad, T. R. S., Thams, S., Wong, A. O. T., Wong, N., Bylund, K., Zhou, C., He, X., Jin, S. B., Clarke, J., Lendahl, U., Li, R. A., Louch, W. E. & Chien, K. R., Jul 5 2018, In : Molecular Therapy. 26, 7, p. 1644-1659 16 p.

Research output: Contribution to journalArticle

Pluripotent Stem Cells
Myocardial Infarction
1 Citation (Scopus)

Identification of a novel enhancer/chromatin opening element associated with high-level -globin gene expression

Shen, Y., Bassett, M. A., Gurumurthy, A., Nar, R., Knudson, I. J., Guy, C. R., Perez, A., Mellen, R. W., Ikeda, M., Hossain, M. A., Huang, S., Igarashi, K. & Bungert, J., Oct 1 2018, In : Molecular and cellular biology. 38, 19, e00197.

Research output: Contribution to journalArticle

Gene Expression
Zinc Fingers
Histone Code
14 Citations (Scopus)

Identification of genes required for Mycobacterium abscessus growth in vivo with a prominent role of the ESX-4 locus

Laencina, L., Dubois, V., Le Moigne, V., Viljoen, A., Majlessi, L., Pritchard, J., Bernut, A., Piel, L., Roux, A. L., Gaillard, J. L., Lombard, B., Loew, D., Rubin, E. J., Brosch, R., Kremer, L., Herrmann, J. L. & Girard-Misguich, F., Jan 30 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 5, p. E1002-E1011

Research output: Contribution to journalArticle

4 Citations (Scopus)

Identification of intestinal UDP-Glucuronosyltransferase inhibitors in green tea (Camellia sinensis) using a biochemometric approach: Application to raloxifene as a test drug via in vitro to in vivo extrapolation

Tian, D. D., Kellogg, J., Okut, N., Oberlies, N. H., Cech, N. B., Shen, D. D., McCune, J. S. & Paine, M. F., May 1 2018, In : Drug Metabolism and Disposition. 46, 5, p. 552-560 9 p.

Research output: Contribution to journalArticle

Open Access
Camellia sinensis
Pharmaceutical Preparations
2 Citations (Scopus)
Skin Neoplasms
TOR Serine-Threonine Kinases
TOR complex 2
6 Citations (Scopus)

Inhibition of tumorigenesis by peroxisome proliferator-activated receptor (PPAR)-dependent cell cycle blocks in human skin carcinoma cells

Borland, M. G., Kehres, E. M., Lee, C., Wagner, A. L., Shannon, B. E., Albrecht, P. P., Zhu, B., Gonzalez, F. J. & Peters, J. M., Jul 1 2018, In : Toxicology. 404-405, p. 25-32 8 p.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Cell Cycle
11 Citations (Scopus)

Integration of Biochemometrics and Molecular Networking to Identify Antimicrobials in Angelica keiskei

Caesar, L. K., Kellogg, J., Kvalheim, O. M., Cech, R. A. & Cech, N. B., Jul 1 2018, In : Planta Medica. 84, 9-10, p. 721-728 8 p., B1077.

Research output: Contribution to journalArticle

Biological Assay
14 Citations (Scopus)

Interleukin 35 Expression Correlates With Microvessel Density in Pancreatic Ductal Adenocarcinoma, Recruits Monocytes, and Promotes Growth and Angiogenesis of Xenograft Tumors in Mice

Huang, C., Li, Z., Li, N., Li, Y., Chang, A., Zhao, T., Wang, X., Wang, H., Gao, S., Yang, S., Hao, J. & Ren, H., Feb 1 2018, In : Gastroenterology. 154, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Intestine farnesoid X receptor agonist and the gut microbiota activate G-protein bile acid receptor-1 signaling to improve metabolism

Pathak, P., Xie, C., Nichols, R. G., Ferrell, J. M., Boehme, S., Krausz, K. W., Patterson, A. D., Gonzalez, F. J. & Chiang, J. Y. L., Oct 1 2018, In : Hepatology. 68, 4, p. 1574-1588 15 p.

Research output: Contribution to journalArticle

Bile Acids and Salts
GTP-Binding Proteins
Glucagon-Like Peptide 1
Taurolithocholic Acid
3 Citations (Scopus)

In vivo genome-wide binding interactions of mouse and human constitutive androstane receptors reveal novel gene targets

Niu, B., Coslo, D. M., Bataille, A. R., Albert, I., Pugh, B. F. & Omiecinski, C. J., Jan 1 2018, In : Nucleic acids research. 46, 16, p. 8385-8403 19 p.

Research output: Contribution to journalArticle

Biological Phenomena
Systems Biology
7 Citations (Scopus)

Kinetic and structural comparison of a protein’s cotranslational folding and refolding pathways

Samelson, A. J., Bolin, E., Costello, S. M., Sharma, A. K., O'Brien, Jr., E. P. & Marqusee, S., May 30 2018, In : Science Advances. 4, 5, eaas9098.

Research output: Contribution to journalArticle

Protein Refolding
Protein Folding
Quality Control
Cell Survival
1 Citation (Scopus)
Ornithine Decarboxylase
Messenger RNA