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2018

Creating cross-linked lamellar block copolymer supporting layers for biomimetic membranes

Lang, C., Shen, Y. X., LaNasa, J. A., Ye, D., Song, W., Zimudzi, T., Hickner, M. A., Gomez, E. D., Gomez, E. W., Kumar, M. & Hickey, III, R. J., Jan 1 2018, In : Faraday Discussions. 209, p. 179-191 13 p.

Research output: Contribution to journalArticle

7 Scopus citations

Cross-linking of Orai1 channels by STIM proteins

Zhou, Y., Nwokonko, R. M., Cai, X., Loktionova, N. A., Abdulqadir, R., Xin, P., Niemeyer, B. A., Wang, Y., Trebak, M. & Gill, D. L., Jan 1 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 15, p. E3398-E3407

Research output: Contribution to journalArticle

20 Scopus citations

Cryo-EM structure of Escherichia coli 70 RNA polymerase and promoter DNA complex revealed a role of non-conserved region during the open complex formation

Narayanan, A., Vago, F. S., Li, K., Qayyum, M. Z., Yernool, D., Jiang, W. & Murakami, K. S., Jan 1 2018, In : Journal of Biological Chemistry. 293, 19, p. 7367-7375 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

CTCF boundary remodels chromatin domain and drives aberrant HOX gene transcription in acute myeloid leukemia

Luo, H., Wang, F., Zha, J., Li, H., Yan, B., Du, Q., Yang, F., Sobh, A., Vulpe, C., Drusbosky, L., Cogle, C., Chepelev, I., Xu, B., Nimer, S. D., Licht, J., Qiu, Y., Chen, B., Xu, M. & Huang, S., Aug 23 2018, In : Blood. 132, 8, p. 837-848 12 p.

Research output: Contribution to journalArticle

10 Scopus citations
2 Scopus citations

Dehydration-induced physical strains of cellulose microfibrils in plant cell walls

Huang, S., Makarem, M., Kiemle, S. N., Zheng, Y., He, X., Ye, D., Gomez, E. W., Gomez, E. D., Cosgrove, D. J. & Kim, S. H., Oct 1 2018, In : Carbohydrate Polymers. 197, p. 337-348 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Design and synthesis of novel thiobarbituric acid derivatives targeting both wild-type and BRAF-mutated melanoma cells

Ramisetti, S. R., Pandey, M. K., Lee, S., Karelia, D., Narayan, S., Amin, S. & Sharma, A., Jan 1 2018, In : European Journal of Medicinal Chemistry. 143, p. 1919-1930 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

Detection of adulteration in Hydrastis canadensis (goldenseal) dietary supplements via untargeted mass spectrometry-based metabolomics

Wallace, E. D., Oberlies, N. H., Cech, N. B. & Kellogg, J. J., Oct 2018, In : Food and Chemical Toxicology. 120, p. 439-447 9 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Determinants of translation speed are randomly distributed across transcripts resulting in a universal scaling of protein synthesis times

Sharma, A. K., Ahmed, N. & O'Brien, E. P., Feb 20 2018, In : Physical Review E. 97, 2, 022409.

Research output: Contribution to journalArticle

3 Scopus citations

Discovery of Enterovirus A71-like nonstructural genomes in recent circulating viruses of the Enterovirus A species

Lee, K. M., Gong, Y. N., Hsieh, T. H., Woodman, A., Dekker, N. H., Cameron, C. E. & Shih, S. R., Dec 1 2018, In : Emerging Microbes and Infections. 7, 1, 111.

Research output: Contribution to journalArticle

4 Scopus citations

DNA polymerase eta prevents tumor cell-cycle arrest and cell death during recovery from replication stress

Barnes, R. P., Tsao, W. C., Moldovan, G. L. & Eckert, K. A., Dec 1 2018, In : Cancer Research. 78, 23, p. 6549-6560 12 p.

Research output: Contribution to journalArticle

7 Scopus citations

Dysregulated Microbial Fermentation of Soluble Fiber Induces Cholestatic Liver Cancer

Singh, V., Yeoh, B. S., Chassaing, B., Xiao, X., Saha, P., Aguilera Olvera, R., Lapek, J. D., Zhang, L., Wang, W. B., Hao, S., Flythe, M. D., Gonzalez, D. J., Cani, P. D., Conejo-Garcia, J. R., Xiong, N., Kennett, M. J., Joe, B., Patterson, A. D., Gewirtz, A. T. & Vijay-Kumar, M., Oct 18 2018, In : Cell. 175, 3, p. 679-694.e22

Research output: Contribution to journalArticle

59 Scopus citations

Dysregulation of mitochondrial bioenergetics and quality control by HIV-1 Tat in cardiomyocytes

Tahrir, F. G., Shanmughapriya, S., Ahooyi, T. M., Knezevic, T., Gupta, M. K., Kontos, C. D., McClung, J. M., Madesh, M., Gordon, J., Feldman, A. M., Cheung, J. Y. & Khalili, K., Feb 1 2018, In : Journal of Cellular Physiology. 233, 2, p. 748-758 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Effect of productive human papillomavirus 16 infection on global gene expression in cervical epithelium

Kang, S. D., Chatterjee, S., Alam, S., Salzberg, A. C., Milici, J., Van Der Burg, S. H. & Meyers, C., Oct 1 2018, In : Journal of virology. 92, 20, e01261.

Research output: Contribution to journalArticle

8 Scopus citations

Effects of Black Raspberry on Dibenzo[a,l]Pyrene Diol Epoxide Induced DNAAdducts, Mutagenesis, and Tumorigenesis in the Mouse Oral Cavity

Chen, K. M., Guttenplan, J. B., Sun, Y. W., Cooper, T., Shalaby, N. A. E., Kosinska, W., Benitez, G., Aliaga, C., Zhu, J., Liao, J., Gowda, K., Amin, S., Stoner, G. & El-Bayoumy, K., Mar 2018, In : Cancer Prevention Research. 11, 3, p. 157-164 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Electron mass enhancement and magnetic phase separation near the Mott transition in double-layer ruthenates

Peng, J., Gu, X. M., Zhou, G. T., Wang, W., Liu, J. Y., Wang, Y., Mao, Z. Q., Wu, X. S. & Dong, S., 2018, In : Frontiers of Physics. 13, 4

Research output: Contribution to journalArticle

1 Scopus citations

Erythromycin leads to differential protein expression through differences in electrostatic and dispersion interactions with nascent proteins

Nguyen, H. L., Pham, D. L., O'Brien, E. P. & Li, M. S., Dec 1 2018, In : Scientific reports. 8, 1, 6460.

Research output: Contribution to journalArticle

2 Scopus citations
4 Scopus citations

Expression of programmed death-ligand 1 by human colonic CD90+ stromal cells differs between ulcerative colitis and Crohn's disease and determines their capacity to suppress Th1 cells

Beswick, E. J., Grim, C., Singh, A., Aguirre, J. E., Tafoya, M., Qiu, S., Rogler, G., McKee, R., Samedi, V., Ma, T. Y., Reyes, V. E., Powell, D. W. & Pinchuk, I. V., May 30 2018, In : Frontiers in immunology. 9, MAY, 1125.

Research output: Contribution to journalArticle

9 Scopus citations

Expression of the purine biosynthetic enzyme phosphoribosyl formylglycinamidine synthase in neurons

Mangold, C. A., Yao, P. J., Du, M., Freeman, W. M., Benkovic, S. J. & Szpara, M. L., Mar 2018, In : Journal of neurochemistry. 144, 6, p. 723-735 13 p.

Research output: Contribution to journalArticle

2 Scopus citations

Familial isolated primary hyperparathyroidism associated with germline GCM2 mutations is more aggressive and has a lesser rate of biochemical cure

El Lakis, M., Nockel, P., Guan, B., Agarwal, S., Welch, J., Simonds, W. F., Marx, S., Li, Y., Nilubol, N., Patel, D., Yang, L., Merkel, R. & Kebebew, E., Jan 2018, In : Surgery (United States). 163, 1, p. 31-34 4 p.

Research output: Contribution to journalArticle

6 Scopus citations

Fiber-Mediated Nourishment of Gut Microbiota Protects against Diet-Induced Obesity by Restoring IL-22-Mediated Colonic Health

Zou, J., Chassaing, B., Singh, V., Pellizzon, M., Ricci, M., Fythe, M. D., Kumar, M. V. & Gewirtz, A. T., Jan 10 2018, In : Cell Host and Microbe. 23, 1, p. 41-53.e4

Research output: Contribution to journalArticle

89 Scopus citations

Fibroepithelial Stromal Polyp of the Vulva: Case Report and Review of Potential Histologic Mimickers

Pharaon, M., Warrick, J. & Lynch, M. C., Jan 1 2018, In : International Journal of Gynecological Pathology. 37, 4, p. e1-e5

Research output: Contribution to journalArticle

Foot-and-mouth disease virus type O specific mutations determine RNA-dependent RNA polymerase fidelity and virus attenuation

Li, C., Wang, H., Yuan, T., Woodman, A., Yang, D., Zhou, G., Cameron, C. E. & Yu, L., May 2018, In : Virology. 518, p. 87-94 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

FOXD1-dependent MICU1 expression regulates mitochondrial activity and cell differentiation

Shanmughapriya, S., Tomar, D., Dong, Z., Slovik, K. J., Nemani, N., Natarajaseenivasan, K., Carvalho, E., Lu, C., Corrigan, K., Garikipati, V. N. S., Ibetti, J., Rajan, S., Barrero, C., Chuprun, K., Kishore, R., Merali, S., Tian, Y., Yang, W. & Madesh, M., Dec 1 2018, In : Nature communications. 9, 1, 3449.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Frequent HPV-independent p16/INK4A overexpression in head and neck cancer

Lechner, M., Chakravarthy, A. R., Walter, V., Masterson, L., Feber, A., Jay, A., Weinberger, P. M., McIndoe, R. A., Forde, C. T., Chester, K., Kalavrezos, N., O'Flynn, P., Forster, M., Jones, T. M., Vaz, F. M., Hayes, D. N. & Fenton, T. R., Aug 2018, In : Oral Oncology. 83, p. 32-37 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Frozen Section as a Rapid and Accurate Method for Diagnosing Acute Invasive Fungal Rhinosinusitis

Hennessy, M., McGinn, J., White, B., Payne, S., Warrick, J. & Crist, H., Sep 1 2018, In : Otolaryngology - Head and Neck Surgery (United States). 159, 3, p. 576-580 5 p.

Research output: Contribution to journalArticle

5 Scopus citations

Genome-wide determinants of sequence-specific DNA binding of general regulatory factors

Rossi, M. J., Lai, W. K. M. & Pugh, B. F., Apr 2018, In : Genome research. 28, 4, p. 497-508 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition

Shastri, N., Tsai, Y. C., Hile, S., Jordan, D., Powell, B., Chen, J., Maloney, D., Dose, M., Lo, Y., Anastassiadis, T., Rivera, O., Kim, T., Shah, S., Borole, P., Asija, K., Wang, X., Smith, K. D., Finn, D., Schug, J., Casellas, R. & 3 others, Yatsunyk, L. A., Eckert, K. A. & Brown, E. J., Oct 18 2018, In : Molecular cell. 72, 2, p. 222-238.e11

Research output: Contribution to journalArticle

14 Scopus citations

Genome-wide mapping of decay factor-mRNA interactions in yeast identifies nutrient-responsive transcripts as targets of the deadenylase Ccr4

Miller, J. E., Zhang, L., Jiang, H., Li, Y., Pugh, B. F. & Reese, J. C., Jan 1 2018, In : G3: Genes, Genomes, Genetics. 8, 1, p. 315-330 16 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

The Cancer Genome Atlas Research Network, Apr 3 2018, In : Cell Reports. 23, 1, p. 194-212.e6

Research output: Contribution to journalArticle

44 Scopus citations

Graviola (Annona muricata) exerts anti-proliferative, anti-clonogenic and pro-apoptotic effects in human non-melanoma skin cancer UW-BCC1 and A431 cells in vitro: Involvement of hedgehog signaling

Chamcheu, J. C., Rady, I., Chamcheu, R. C. N., Siddique, A. B., Bloch, M. B., Mbeumi, S. B., Babatunde, A. S., Uddin, M. B., Noubissi, F. K., Jurutka, P. W., Liu, Y. Y., Spiegelman, V. S., Whitfield, G. K. & El Sayed, K. A., Jun 16 2018, In : International journal of molecular sciences. 19, 6, 1791.

Research output: Contribution to journalArticle

4 Scopus citations

Gut microbiota and intestinal FXR mediate the clinical benefits of metformin

Sun, L., Xie, C., Wang, G., Wu, Y., Wu, Q., Wang, X., Liu, J., Deng, Y., Xia, J., Chen, B., Zhang, S., Yun, C., Lian, G., Zhang, X., Zhang, H., Bisson, W. H., Shi, J., Gao, X., Ge, P., Liu, C. & 8 others, Krausz, K. W., Nichols, R. G., Cai, J., Rimal, B., Patterson, A. D., Wang, X., Gonzalez, F. J. & Jiang, C., Dec 1 2018, In : Nature Medicine. 24, 12, p. 1919-1929 11 p.

Research output: Contribution to journalArticle

79 Scopus citations

Hepatitis B virus core protein dephosphorylation occurs during pregenomic RNA encapsidation

Zhao, Q., Hu, Z., Cheng, J., Wu, S., Luo, Y., Chang, J., Hu, J. & Guo, J. T., Jul 1 2018, In : Journal of virology. 92, 13, e02139-17.

Research output: Contribution to journalArticle

8 Scopus citations

High Level of Neutrophil Extracellular Traps Correlates with Poor Prognosis of Severe Influenza A Infection

Zhu, L., Liu, L., Zhang, Y., Pu, L., Liu, J., Li, X., Chen, Z., Hao, Y., Wang, B., Han, J., Li, G., Liang, S., Xiong, H., Zheng, H., Li, A., Xu, J. & Zeng, H., Jan 17 2018, In : Journal of Infectious Diseases. 217, 3, p. 428-437 10 p.

Research output: Contribution to journalArticle

24 Scopus citations

Hijacking of multiple phospholipid biosynthetic pathways and induction of membrane biogenesis by a picornaviral 3CD protein

Banerjee, S., Aponte-Diaz, D., Yeager, C., Sharma, S. D., Ning, G., Oh, H. S., Han, Q., Umeda, M., Hara, Y., Wang, R. Y. L. & Cameron, C. E., May 2018, In : PLoS pathogens. 14, 5, e1007086.

Research output: Contribution to journalArticle

9 Scopus citations
Open Access
2 Scopus citations

Human ISL1 + Ventricular Progenitors Self-Assemble into an In Vivo Functional Heart Patch and Preserve Cardiac Function Post Infarction

Foo, K. S., Lehtinen, M. L., Leung, C. Y., Lian, X., Xu, J., Keung, W., Geng, L., Kolstad, T. R. S., Thams, S., Wong, A. O. T., Wong, N., Bylund, K., Zhou, C., He, X., Jin, S. B., Clarke, J., Lendahl, U., Li, R. A., Louch, W. E. & Chien, K. R., Jul 5 2018, In : Molecular Therapy. 26, 7, p. 1644-1659 16 p.

Research output: Contribution to journalArticle

7 Scopus citations

Identification of a novel enhancer/chromatin opening element associated with high-level -globin gene expression

Shen, Y., Bassett, M. A., Gurumurthy, A., Nar, R., Knudson, I. J., Guy, C. R., Perez, A., Mellen, R. W., Ikeda, M., Hossain, M. A., Huang, S., Igarashi, K. & Bungert, J., Oct 1 2018, In : Molecular and cellular biology. 38, 19, e00197.

Research output: Contribution to journalArticle

1 Scopus citations

Identification of genes required for Mycobacterium abscessus growth in vivo with a prominent role of the ESX-4 locus

Laencina, L., Dubois, V., Le Moigne, V., Viljoen, A., Majlessi, L., Pritchard, J., Bernut, A., Piel, L., Roux, A. L., Gaillard, J. L., Lombard, B., Loew, D., Rubin, E. J., Brosch, R., Kremer, L., Herrmann, J. L. & Girard-Misguich, F., Jan 30 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 5, p. E1002-E1011

Research output: Contribution to journalArticle

18 Scopus citations

Identification of intestinal UDP-Glucuronosyltransferase inhibitors in green tea (Camellia sinensis) using a biochemometric approach: Application to raloxifene as a test drug via in vitro to in vivo extrapolation

Tian, D. D., Kellogg, J. J., Okut, N., Oberlies, N. H., Cech, N. B., Shen, D. D., McCune, J. S. & Paine, M. F., May 2018, In : Drug Metabolism and Disposition. 46, 5, p. 552-560 9 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2 Scopus citations

Inhibition of tumorigenesis by peroxisome proliferator-activated receptor (PPAR)-dependent cell cycle blocks in human skin carcinoma cells

Borland, M. G., Kehres, E. M., Lee, C., Wagner, A. L., Shannon, B. E., Albrecht, P. P., Zhu, B., Gonzalez, F. J. & Peters, J. M., Jul 1 2018, In : Toxicology. 404-405, p. 25-32 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Integration of Biochemometrics and Molecular Networking to Identify Antimicrobials in Angelica keiskei

Caesar, L. K., Kellogg, J. J., Kvalheim, O. M., Cech, R. A. & Cech, N. B., Jul 1 2018, In : Planta Medica. 84, 9-10, p. 721-728 8 p., B1077.

Research output: Contribution to journalArticle

11 Scopus citations

Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors

George, J., Walter, V., Peifer, M., Alexandrov, L. B., Seidel, D., Leenders, F., Maas, L., Müller, C., Dahmen, I., Delhomme, T. M., Ardin, M., Leblay, N., Byrnes, G., Sun, R., De Reynies, A., McLeer-Florin, A., Bosco, G., Malchers, F., Menon, R., Altmüller, J. & 42 others, Becker, C., Nürnberg, P., Achter, V., Lang, U., Schneider, P. M., Bogus, M., Soloway, M. G., Wilkerson, M. D., Cun, Y., McKay, J. D., Moro-Sibilot, D., Brambilla, C. G., Lantuejoul, S., Lemaitre, N., Soltermann, A., Weder, W., Tischler, V., Brustugun, O. T., Lund-Iversen, M., Helland, Å., Solberg, S., Ansén, S., Wright, G., Solomon, B., Roz, L., Pastorino, U., Petersen, I., Clement, J. H., Sänger, J., Wolf, J., Vingron, M., Zander, T., Perner, S., Travis, W. D., Haas, S. A., Olivier, M., Foll, M., Büttner, R., Hayes, D. N., Brambilla, E., Fernandez-Cuesta, L. & Thomas, R. K., Dec 1 2018, In : Nature communications. 9, 1, 1048.

Research output: Contribution to journalArticle

39 Scopus citations

Interleukin 35 Expression Correlates With Microvessel Density in Pancreatic Ductal Adenocarcinoma, Recruits Monocytes, and Promotes Growth and Angiogenesis of Xenograft Tumors in Mice

Huang, C., Li, Z., Li, N., Li, Y., Chang, A., Zhao, T., Wang, X., Wang, H., Gao, S., Yang, S., Hao, J. & Ren, H., Feb 2018, In : Gastroenterology. 154, 3, p. 675-688 14 p.

Research output: Contribution to journalArticle

20 Scopus citations

Intestine farnesoid X receptor agonist and the gut microbiota activate G-protein bile acid receptor-1 signaling to improve metabolism

Pathak, P., Xie, C., Nichols, R. G., Ferrell, J. M., Boehme, S., Krausz, K. W., Patterson, A. D., Gonzalez, F. J. & Chiang, J. Y. L., Oct 2018, In : Hepatology. 68, 4, p. 1574-1588 15 p.

Research output: Contribution to journalArticle

58 Scopus citations

In vivo genome-wide binding interactions of mouse and human constitutive androstane receptors reveal novel gene targets

Niu, B., Coslo, D. M., Bataille, A. R., Albert, I., Franklin Pugh, B. & Omiecinski, C. J., Jan 1 2018, In : Nucleic acids research. 46, 16, p. 8385-8403 19 p.

Research output: Contribution to journalArticle

5 Scopus citations

Kinetic and structural comparison of a protein’s cotranslational folding and refolding pathways

Samelson, A. J., Bolin, E., Costello, S. M., Sharma, A. K., O’Brien, E. P. & Marqusee, S., May 30 2018, In : Science Advances. 4, 5, eaas9098.

Research output: Contribution to journalArticle

9 Scopus citations
2 Scopus citations