Research Output

2020

A Deep Learning approach to Photoacoustic Wavefront Localization in Deep-Tissue Medium

Johnstonbaugh, K., Agrawal, S., Durairaj, D. A., Fadden, C., Dangi, A., Karri, S. P. K. & Kothapalli, S. R., 2020, (Accepted/In press) In : IEEE transactions on ultrasonics, ferroelectrics, and frequency control.

Research output: Contribution to journalArticle

6 Scopus citations

A helical assembly of human ESCRT-I scaffolds reverse-topology membrane scission

Flower, T. G., Takahashi, Y., Hudait, A., Rose, K., Tjahjono, N., Pak, A. J., Yokom, A. L., Liang, X., Wang, H. G., Bouamr, F., Voth, G. A. & Hurley, J. H., Jun 1 2020, In : Nature Structural and Molecular Biology. 27, 6, p. 570-580 11 p.

Research output: Contribution to journalArticle

Alteration of CTCF-associated chromatin neighborhood inhibits TAL1-driven oncogenic transcription program and leukemogenesis

Li, Y., Liao, Z., Luo, H., Benyoucef, A., Kang, Y., Lai, Q., Dovat, S., Miller, B., Chepelev, I., Li, Y., Zhao, K., Brand, M. & Huang, S., Apr 6 2020, In : Nucleic acids research. 48, 6, p. 3119-3133 15 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Alternating magnetic field mediated release of fluorophores from magnetic nanoparticles by hysteretic heating

Casey, J. S., Arrizabalaga, J. H., Abu-Laban, M., Becca, J. C., Rose, B. J., Strickland, K. T., Bursavich, J. B., McCann, J. S., Pacheco, C. N., Jessen, L., Attaluri, A. & Hayes, D. J., Jul 1 2020, In : Journal of Colloid And Interface Science. 571, p. 348-355 8 p.

Research output: Contribution to journalArticle

AML chemoresistance: The role of mutant TP53 subclonal expansion and therapy strategy

Yan, B., Claxton, D., Huang, S. & Qiu, Y., Jul 2020, In : Experimental Hematology. 87, p. 13-19 7 p.

Research output: Contribution to journalArticle

A modular approach to neonatal whole-brain photoacoustic imaging

Dangi, A., Roy, K., Agrawal, S., Chen, H., Ashok, A., Wible, C., Osman, M., Pratap, R. & Kothapalli, S. R., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1124057. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A multistage murine breast cancer model reveals long-lived premalignant clones refractory to parity-induced protection

Li, S., Gestl, S. A. & Gunther, E. J., Jan 1 2020, In : Cancer Prevention Research. 13, 2, p. 173-183 11 p.

Research output: Contribution to journalArticle

Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny

Patel, N. J., Hogan, K. J., Rizk, E., Stewart, K., Madrid, A., Vadakkadath Meethal, S., Alisch, R., Borth, L., Papale, L. A., Ondoma, S., Gorges, L. R., Weber, K., Lake, W., Bauer, A., Hariharan, N., Kuehn, T., Cook, T., Keles, S., Newton, M. A. & Iskandar, B. J., Apr 1 2020, In : Molecular Neurobiology. 57, 4, p. 2048-2071 24 p.

Research output: Contribution to journalArticle

An Efficient Synthesis of Dibenzo[a,l]tetracene and Dibenzo[a,j]tetracene and Their Identification in a Coal Tar Extract

Ramisetti, S. R., Oña-Ruales, J. O., Wise, S. A., Amin, S. & Sharma, A. K., Jan 1 2020, In : Polycyclic Aromatic Compounds. 40, 1, p. 88-98 11 p.

Research output: Contribution to journalArticle

A novel null allele, HLA-DPA1*01:35N in a European American Male from Pennsylvania, USA

Fisher, C., Casey, H., Kumer, L., Tyler, J. & Shike, H., 2020, (Accepted/In press) In : HLA.

Research output: Contribution to journalArticle

A novel PrECOG (PrE0901) dose-escalation trial using eltrombopag: enhanced platelet recovery during consolidation therapy in acute myeloid leukemia

Strickland, S. A., Wang, X. V., Cerny, J., Rowe, J. M., Rybka, W., Tallman, M. S., Litzow, M. & Lazarus, H. M., 2020, (Accepted/In press) In : Leukemia and Lymphoma.

Research output: Contribution to journalArticle

A phase 1 trial of everolimus and bevacizumab in children with recurrent solid tumors

Santana, V. M., Sahr, N., Tatevossian, R. G., Jia, S., Campagne, O., Sykes, A., Stewart, C. F., Furman, W. L. & McGregor, L. M., Apr 15 2020, In : Cancer. 126, 8, p. 1749-1757 9 p.

Research output: Contribution to journalArticle

A Photoacoustic Imaging Device Using Piezoelectric Micromachined Ultrasound Transducers (PMUTs)

Dangi, A., Cheng, C. Y., Agrawal, S., Tiwari, S., Datta, G. R., Benoit, R. R., Pratap, R., Trolier-Mckinstry, S. & Kothapalli, S. R., Apr 2020, In : IEEE transactions on ultrasonics, ferroelectrics, and frequency control. 67, 4, p. 801-809 9 p., 8915732.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A rewiring model of intratumoral interaction networks

Sang, M., Rice, S., Jiang, L., Liu, X., Gragnoli, C., Belani, C. P. & Wu, R., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 45-51 7 p.

Research output: Contribution to journalReview article

Open Access

A Robustified Posterior for Bayesian Inference on a Large Number of Parallel Effects

Liao, J. G., Berg, A. & McMurry, T. L., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

ASR488, a novel small molecule, activates an mRNA binding protein, CPEB1, and inhibits the growth of bladder cancer

Tyagi, A., Kolluru, V., Chandrasekaran, B., Saran, U., Sharma, A. K., Ankem, M. K. & Damodaran, C., Jul 2020, In : Oncology Letters. 20, 1, p. 850-860 11 p.

Research output: Contribution to journalArticle

Open Access

A subset analysis of a phase II trial evaluating the use of DFMO as maintenance therapy for high-risk neuroblastoma

Lewis, E. C., Kraveka, J. M., Ferguson, W., Eslin, D., Brown, V. I., Bergendahl, G., Roberts, W., Wada, R. K., Oesterheld, J., Mitchell, D., Foley, J., Zage, P., Rawwas, J., Rich, M., Lorenzi, E., Broglio, K., Berry, D. & Saulnier Sholler, G. L., 2020, (Accepted/In press) In : International Journal of Cancer.

Research output: Contribution to journalArticle

Open Access

A surrogate ℓ0 sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data

Kawaguchi, E. S., Suchard, M. A., Liu, Z. & Li, G., Mar 15 2020, In : Statistics in Medicine. 39, 6, p. 675-686 12 p.

Research output: Contribution to journalArticle

Atonic seizures in children: a meta-analysis comparing corpus callosotomy to vagus nerve stimulation

Ye, V. C., Mansouri, A., Warsi, N. M. & Ibrahim, G. M., 2020, (Accepted/In press) In : Child's Nervous System.

Research output: Contribution to journalArticle

Biogeography and evidence for adaptive explanations of autumn colors

Pena-Novas, I. & Archetti, M., 2020, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalLetter

Open Access

Cell surface vimentin-positive circulating tumor cell-based relapse prediction in a long-term longitudinal study of postremission neuroblastoma patients

Batth, I. S., Dao, L., Satelli, A., Mitra, A., Yi, S., Noh, H., Li, H., Brownlee, Z., Zhou, S., Bond, J., Wang, J., Gill, J., Sholler, G. S. & Li, S., 2020, (Accepted/In press) In : International Journal of Cancer.

Research output: Contribution to journalArticle

Cellular signaling and epigenetic regulation of gene expression in leukemia

Gowda, C., Song, C., Ding, Y., Iyer, S., Dhanyamraju, P. K., McGrath, M., Bamme, Y., Soliman, M., Kane, S., Payne, J. L. & Dovat, S., Jan 2020, In : Advances in Biological Regulation. 75, 100665.

Research output: Contribution to journalReview article

Open Access
2 Scopus citations

Ceramide analogue SACLAC modulates sphingolipid levels and MCL-1 splicing to induce apoptosis in acute myeloid leukemia

Pearson, J. M., Tan, S. F., Sharma, A., Annageldiyev, C., Fox, T. E., Abad, J. L., Fabrias, G., Desai, D., Amin, S., Wang, H. G., Cabot, M. C., Claxton, D. F., Kester, M., Feith, D. J. & Loughran, T. P., 2020, In : Molecular Cancer Research. 18, 3, p. 352-363 12 p.

Research output: Contribution to journalArticle

Citrate-Based Tannin-Bridged Bone Composites for Lumbar Fusion

Guo, J., Tian, X., Xie, D., Rahn, K., Gerhard, E., Kuzma, M. L., Zhou, D., Dong, C., Bai, X., Lu, Z. & Yang, J., Jul 1 2020, In : Advanced Functional Materials. 30, 27, 2002438.

Research output: Contribution to journalArticle

Clinical characteristics, management, and outcome of incidental pulmonary embolism in cancer patients

Qdaisat, A., Kamal, M., Al-Breiki, A., Goswami, B., Wu, C. C., Zhou, S., Rice, T. W., Alagappan, K. & Yeung, S. C. J., Apr 28 2020, In : Blood Advances. 4, 8, p. 1606-1614 9 p.

Research output: Contribution to journalArticle

Open Access

Clinical impact of COVID-19 on patients with cancer (CCC19): a cohort study

COVID-19 and Cancer Consortium, Jun 20 2020, In : The Lancet. 395, 10241, p. 1907-1918 12 p.

Research output: Contribution to journalArticle

Open Access

Clinical trials for deep brain stimulation: Current state of affairs

Harmsen, I. E., Elias, G. J. B., Beyn, M. E., Boutet, A., Pancholi, A., Germann, J., Mansouri, A., Lozano, C. S. & Lozano, A. M., Mar 1 2020, In : Brain Stimulation. 13, 2, p. 378-385 8 p.

Research output: Contribution to journalArticle

Open Access

Commentary on the management of total laryngectomy patients during the COVID-19 pandemic

Hennessy, M., Bann, D. V., Patel, V. A., Saadi, R., Krempl, G. A., Deschler, D. G., Goyal, N. & Choi, K. Y., Jun 1 2020, In : Head and Neck. 42, 6, p. 1137-1143 7 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Comparative effectiveness of surgery versus external beam radiation with/without brachytherapy in high-risk localized prostate cancer

Yin, M., Zhao, J., Monk, P., Martin, D., Folefac, E., Joshi, M., Jin, N., Mortazavi, A., Verschraegen, C. & Clinton, S., Jan 1 2020, In : Cancer medicine. 9, 1, p. 27-34 8 p.

Research output: Contribution to journalArticle

Open Access

Connecting and Contrasting the Bayes Factor and a Modified ROPE Procedure for Testing Interval Null Hypotheses

Liao, J. G., Midya, V. & Berg, A., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

Context-dependent activation of SIRT3 is necessary for anchorage-independent survival and metastasis of ovarian cancer cells

Kim, Y. S., Gupta Vallur, P., Jones, V. M., Worley, B. L., Shimko, S., Shin, D. H., Crawford, L. T. C., Chen, C. W., Aird, K. M., Abraham, T., Shepherd, T. G., Warrick, J. I., Lee, N. Y., Phaeton, R., Mythreye, K. & Hempel, N., Feb 20 2020, In : Oncogene. 39, 8, p. 1619-1633 15 p.

Research output: Contribution to journalArticle

Correction to: Ancestral Folate Promotes Neuronal Regeneration in Serial Generations of Progeny (Molecular Neurobiology, (2020), 57, 4, (2048-2071), 10.1007/s12035-019-01812-5)

Patel, N. J., Hogan, K. J., Rizk, E., Stewart, K., Madrid, A., Meethal, S. V., Alisch, R., Borth, L., Papale, L. A., Ondoma, S., Gorges, L. R., Weber, K., Lake, W., Bauer, A., Hariharan, N., Kuehn, T., Cook, T., Keles, S., Newton, M. A. & Iskandar, B. J., Apr 1 2020, In : Molecular Neurobiology. 57, 4, p. 2072-2073 2 p.

Research output: Contribution to journalComment/debate

Open Access

Cryo-EM structure of catalytic ribonucleoprotein complex RNase MRP

Perederina, A., Li, D., Lee, H., Bator, C., Berezin, I., Hafenstein, S. & Krasilnikov, A. S., Dec 1 2020, In : Nature communications. 11, 1, 3474.

Research output: Contribution to journalArticle

Open Access
Open Access

Design, synthesis characterization and biological evaluation of novel multi-isoform ALDH inhibitors as potential anticancer agents

Dinavahi, S. S., Gowda, R., Bazewicz, C. G., Battu, M. B., Lin, J. M., Chitren, R. J., Pandey, M. K., Amin, S., Robertson, G. P. & Gowda, K., Feb 1 2020, In : European Journal of Medicinal Chemistry. 187, 111962.

Research output: Contribution to journalArticle

Design and construction of a Maxwell-type induction coil for magnetic nanoparticle hyperthermia

Attaluri, A., Jackowski, J., Sharma, A., Kandala, S. K., Nemkov, V., Yakey, C., DeWeese, T. L., Kumar, A., Goldstein, R. C. & Ivkov, R., Jan 1 2020, In : International Journal of Hyperthermia. 37, 1, p. 1-14 14 p.

Research output: Contribution to journalArticle

Open Access

Detection of bacterial infection via a fidget spinner

Li, H., Torab, P. & Wong, P. K., Jun 1 2020, In : Nature Biomedical Engineering. 4, 6, p. 577-578 2 p.

Research output: Contribution to journalArticle

Developing “Nurse AMIE”: A tablet-based supportive care intervention for women with metastatic breast cancer

Schmitz, K. H., Zhang, X., Winkels, R., Schleicher, E., Mathis, K., Doerksen, S., Cream, L., Rosenberg, J., Kass, R., Farnan, M., Halpin-Murphy, P., Suess, R., Zucker, D. & Hayes, M., Jan 1 2020, In : Psycho-Oncology. 29, 1, p. 232-236 5 p.

Research output: Contribution to journalArticle

Development and Therapeutic Potential of Selenazo Compounds

Ruberte, A. C., Sanmartin, C., Aydillo, C., Sharma, A. K. & Plano, D., Feb 27 2020, In : Journal of Medicinal Chemistry. 63, 4, p. 1473-1489 17 p.

Research output: Contribution to journalArticle

5 Scopus citations

Development of a Novel Multi-Isoform ALDH Inhibitor Effective as an Antimelanoma Agent

Dinavahi, S. S., Gowda, R., Gowda, K., Bazewicz, C. G., Chirasani, V. R., Battu, M. B., Berg, A., Dokholyan, N. V., Amin, S. & Robertson, G. P., Feb 1 2020, In : Molecular cancer therapeutics. 19, 2, p. 447-459 13 p.

Research output: Contribution to journalArticle

Differentiation and characterization of neural progenitors and neurons from mouse embryonic stem cells

Hanafiah, A., Geng, Z., Wang, Q. & Gao, Z., May 2020, In : Journal of Visualized Experiments. 2020, 159, e61446.

Research output: Contribution to journalArticle

Differentiation of Adipose Tissue–Derived CD34+/CD31− Cells into Endothelial Cells In Vitro

Forghani, A., Koduru, S. V., Chen, C., Leberfinger, A. N., Ravnic, D. J. & Hayes, D. J., Mar 1 2020, In : Regenerative Engineering and Translational Medicine. 6, 1, p. 101-110 10 p.

Research output: Contribution to journalArticle

Dose-dependent effect of aerobic exercise on inflammatory biomarkers in a randomized controlled trial of women at high risk of breast cancer

Haley, J. S., Hibler, E. A., Zhou, S., Schmitz, K. H. & Sturgeon, K. M., Jan 15 2020, In : Cancer. 126, 2, p. 329-336 8 p.

Research output: Contribution to journalArticle

Open Access

Effect of creative writing on mood in patients with cancer

Zhu, J., Hussain, M., Joshi, A., Truica, C. I., Nesterova, D., Collins, J., Saunders, E. F. H., Hayes, M., Drabick, J. J. & Joshi, M., Mar 1 2020, In : BMJ Supportive and Palliative Care. 10, 1, p. 64-67 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Effects of Blended (Yellow) vs Forced Coagulation (Blue) Currents on Adverse Events, Complete Resection, or Polyp Recurrence After Polypectomy in a Large Randomized Trial

Pohl, H., Grimm, I. S., Moyer, M. T., Hasan, M. K., Pleskow, D., Elmunzer, B. J., Khashab, M. A., Sanaei, O., Al-Kawas, F. H., Gordon, S. R., Mathew, A., Levenick, J., Aslanian, H. R., Antaki, F., von Renteln, D., Crockett, S. D., Rastogi, A., Gill, J. A., Law, R. J., Elias, P. A. & 3 others, Pellise, M., Mackenzie, T. A. & Rex, D. K., Jul 2020, In : Gastroenterology. 159, 1, p. 119-128.e2

Research output: Contribution to journalArticle

Open Access