• United States

Research Output

2020

Age-related accumulation of de novo mitochondrial mutations in mammalian oocytes and somatic tissues

Arbeithuber, B., Hester, J., Cremona, M., Stoler, N., Zaidi, A., Higgins, B., Anthony, K., Chiaromonte, F., Diaz, F. J. & Makova, K. D., Jul 1 2020, In : PLoS biology. 18, 7, p. e3000745

Research output: Contribution to journalArticle

Open Access

A multiple robust propensity score method for longitudinal analysis with intermittent missing data

Chen, C., Shen, B., Liu, A., Wu, R. & Wang, M., 2020, (Accepted/In press) In : Biometrics.

Research output: Contribution to journalArticle

Analysis of quasi-dynamic ordinary differential equations and the quasi-dynamic replicator

Griffin, C., Jiang, L. & Wu, R., Jan 1 2020, (Accepted/In press) In : Physica A: Statistical Mechanics and its Applications. 555, 124422.

Research output: Contribution to journalArticle

A rewiring model of intratumoral interaction networks

Sang, M., Rice, S., Jiang, L., Liu, X., Gragnoli, C., Belani, C. P. & Wu, R., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 45-51 7 p.

Research output: Contribution to journalReview article

Open Access

A Robustified Posterior for Bayesian Inference on a Large Number of Parallel Effects

Liao, J. G., Berg, A. & McMurry, T. L., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

Assessing the Impact of the NIH CTSA Program on Clinical Trials Registered With ClinicalTrials.gov

Berg, A., Jul 1 2020, In : Clinical and Translational Science. 13, 4, p. 818-825 8 p.

Research output: Contribution to journalArticle

Open Access

Association analysis and meta-analysis of multiallelic variants for large-scale sequence data

Jiang, Y., Chen, S., Wang, X., Liu, M., Iacono, W. G., Hewitt, J. K., Hokanson, J. E., Krauter, K., Laakso, M., Li, K. W., Lutz, S. M., McGue, M., Pandit, A., Zajac, G. J. M., Boehnke, M., Abecasis, G. R., Vrieze, S. I., Jiang, B., Zhan, X. & Liu, D. J., May 2020, In : Genes. 11, 5, 585.

Research output: Contribution to journalArticle

Open Access

Association Between Early Recovery of Kidney Function After Acute Kidney Injury and Long-term Clinical Outcomes

Bhatraju, P. K., Zelnick, L. R., Chinchilli, V. M., Moledina, D. G., Coca, S. G., Parikh, C. R., Garg, A. X., Hsu, C. Y., Go, A. S., Liu, K. D., Ikizler, T. A., Siew, E. D., Kaufman, J. S., Kimmel, P. L., Himmelfarb, J. & Wurfel, M. M., Apr 1 2020, In : JAMA network open. 3, 4, p. e202682

Research output: Contribution to journalArticle

Open Access

Association of Participation in an End-of-Life Conversation Game With Advance Care Planning Behavior and Perspectives Among African American Individuals

Van Scoy, L. J., Levi, B. H., Witt, P., Bramble, C., Richardson, C., Putzig, I., Levi, A. R., Wasserman, E., Chinchilli, V., Tucci, A. & Green, M. J., May 1 2020, In : JAMA network open. 3, 5, p. e204315

Research output: Contribution to journalArticle

Open Access

Association of SNP–SNP Interactions of Surfactant Protein Genes with Pediatric Acute Respiratory Failure

Gandhi, C., Chen, C., Wu, R., Yang, L., Thorenoor, N., Thomas, N., DiAngelo, S., Spear, D., Keim, G., Yehya, N. & Floros, J., Apr 20 2020, In : Journal of Clinical Medicine. 9, 4, p. 1183

Research output: Contribution to journalArticle

Open Access
Open Access

Association of vitamin A deficiency with early childhood stunting in Uganda: A populationbased cross-sectional study

Ssentongo, P., Ba, D. M., Ssentongo, A. E., Fronterre, C., Whalen, A., Yang, Y., Ericson, J. E. & Chinchilli, V. M., May 2020, In : PloS one. 15, 5, e0233615.

Research output: Contribution to journalArticle

Open Access
Open Access
Open Access
Open Access

Clinical and Genetic Factors Associated With Complications After Crohn's Ileocolectomy

Kline, B. P., Weaver, T., Brinton, D. L., Deiling, S., Yochum, G. S., Berg, A. S. & Koltun, W. A., Mar 1 2020, In : Diseases of the colon and rectum. 63, 3, p. 357-364 8 p.

Research output: Contribution to journalArticle

Connecting and Contrasting the Bayes Factor and a Modified ROPE Procedure for Testing Interval Null Hypotheses

Liao, J. G., Midya, V. & Berg, A., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

Consistent selection of the number of change-points via sample-splitting

Zou, C., Wang, G. & Li, R., Jan 1 2020, In : Annals of Statistics. 48, 1, p. 413-439 27 p.

Research output: Contribution to journalArticle

1 Scopus citations

Deep Vein Thrombosis in Extracorporeal Membrane Oxygenation Bridged Lung Transplant Recipients

Shtraichman, O., Courtwright, A., Diamond, J. M., Ahya, V., Christie, J. D., Hadjiliadis, D., Lee, J. C., Patel, N. B., Berg, A., Cantu, E., Crespo, M. M. & Bermudez, C. A., Apr 1 2020, In : The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation. 39, 4, p. S319

Research output: Contribution to journalArticle

Development of a Novel Multi-Isoform ALDH Inhibitor Effective as an Antimelanoma Agent

Dinavahi, S. S., Gowda, R., Gowda, K., Bazewicz, C. G., Chirasani, V. R., Battu, M. B., Berg, A., Dokholyan, N. V., Amin, S. & Robertson, G. P., Feb 1 2020, In : Molecular cancer therapeutics. 19, 2, p. 447-459 13 p.

Research output: Contribution to journalArticle

Distributed feature screening via componentwise debiasing

Li, X., Li, R., Xia, Z. & Xu, C., Feb 1 2020, In : Journal of Machine Learning Research. 21

Research output: Contribution to journalArticle

Examining measurement reactivity in daily diary data on substance use: Results from a randomized experiment

Buu, A., Yang, S., Li, R., Zimmerman, M. A., Cunningham, R. M. & Walton, M. A., Mar 2020, In : Addictive Behaviors. 102, 106198.

Research output: Contribution to journalArticle

Fatal heart disease among cancer patients

Stoltzfus, K. C., Zhang, Y., Sturgeon, K., Sinoway, L. I., Trifiletti, D. M., Chinchilli, V. M. & Zaorsky, N. G., Dec 1 2020, In : Nature communications. 11, 1, 2011.

Research output: Contribution to journalArticle

Open Access

Feasibility of nonanonymous burnout surveys in a large academic department

Riley, T. D., Curry, W. J., Beck, M. J., Berg, A. & Ruffin, M. T., Apr 2020, In : Family medicine. 54, 4, p. 278-281 4 p.

Research output: Contribution to journalArticle

Open Access

Feature selection for generalized varying coefficient mixed-effect models with application to obesity gwas

Chu, W., Li, R., Liu, J. & Reimherr, M., Mar 2020, In : Annals of Applied Statistics. 14, 1, p. 276-298 23 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genome-wide analysis of the NAC domain transcription factor gene family in Theobroma cacao

Shen, S., Zhang, Q., Shi, Y., Sun, Z., Zhang, Q., Hou, S., Wu, R., Jiang, L., Zhao, X. & Guo, Y., Jan 2020, In : Genes. 11, 1, 35.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Give more data, awareness and control to individual citizens, and they will help COVID-19 containment

Nanni, M., Andrienko, G., Barabàsi, A. L., Boldrini, C., Bonchi, F., Cattuto, C., Chiaromonte, F., Comandé, G., Conti, M., Coté, M., Dignum, F., Dignum, V., Domingo-Ferrer, J., Ferragina, P., Giannotti, F., Guidotti, R., Helbing, D., Kaski, K., Kertesz, J., Lehmann, S. & 20 others, Lepri, B., Lukowicz, P., Matwin, S., Jiménez, D., Monreale, A., Morik, K., Oliver, N., Passarella, A., Passerini, A., Pedreschi, D., Pentland, A., Pianesi, F., Pratesi, F., Rinzivillo, S., Ruggieri, S., Siebes, A., Torra, V., Trasarti, R., Van Den Hoven, J. & Vespignani, A., Apr 2020, In : Transactions on Data Privacy. 13, 1, p. 61-66 6 p.

Research output: Contribution to journalArticle

Identification of Quantitative Trait Loci for Altitude Adaptation of Tree Leaf Shape With Populus szechuanica in the Qinghai-Tibetan Plateau

Ye, M., Zhu, X., Gao, P., Jiang, L. & Wu, R., May 27 2020, In : Frontiers in Plant Science. 11, 632.

Research output: Contribution to journalArticle

Open Access

Impact of Social Support on Colorectal Cancer Screening among Adult Hispanics/Latinos: A Randomized Community-based Study in Central Pennsylvania

Dominic, O. G., Chinchilli, V., Wasserman, E., Curry, W. J., Kambic, D. M., Caicedo, C. H., Ramirez, A. G., Ochoa, J. A. & Lengerich, E. J., Jun 1 2020, In : Cancer Prevention Research. 13, 6, p. 531-542 12 p.

Research output: Contribution to journalArticle

Investigation of discordant phenotype in mild Hemophilia A using whole exome sequencing

Cygan, P. H., Arnold-Croop, S. E., Weidman, E. A., Chen, F., Liu, D. J., Eyster, M. E. & Carrel, L., Sep 2020, In : Thrombosis Research. 193, p. 36-39 4 p.

Research output: Contribution to journalLetter

Model-Free Feature Screening and FDR Control With Knockoff Features

Liu, W., Ke, Y., Liu, J. & Li, R., 2020, (Accepted/In press) In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

Neighbourhood-level deprivation indices and postpartum women's health: Results from the Community Child Health Network (CCHN) multi-site study

Kaufman-Shriqui, V., O'Campo, P., Misir, V., Schafer, P., Morinis, J., Vance, M., Dunkel Schetter, C., Raju, T. N. K., Hillemeier, M. M., Lanzi, R. & Chinchilli, V. M., Feb 22 2020, In : Health and Quality of Life Outcomes. 18, 1, 38.

Research output: Contribution to journalArticle

Open Access

Online sufficient dimension reduction through sliced inverse regression

Cai, Z., Li, R. & Zhu, L., Jan 1 2020, In : Journal of Machine Learning Research. 21

Research output: Contribution to journalArticle

On the bias of H-scores for comparing biclusters, and how to correct it

Di Iorio, J., Chiaromonte, F., Chiaromonte, F., Cremona, M. A. & Cremona, M. A., May 1 2020, In : Bioinformatics. 36, 9, p. 2955-2957 3 p.

Research output: Contribution to journalLetter

Post-Acute Kidney Injury Proteinuria and Subsequent Kidney Disease Progression: The Assessment, Serial Evaluation, and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) Study

Hsu, C. Y., Chinchilli, V. M., Coca, S., Devarajan, P., Ghahramani, N., Go, A. S., Hsu, R. K., Ikizler, T. A., Kaufman, J., Liu, K. D., Parikh, C. R., Reeves, W. B., Wurfel, M., Zappitelli, M., Kimmel, P. L. & Siew, E. D., Mar 2020, In : JAMA Internal Medicine. 180, 3, p. 402-410 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Prioritizing genetic variants in GWAS with lasso using permutation-assisted tuning

Yang, S., Wen, J., Eckert, S. T., Wang, Y., Liu, D. J., Wu, R., Li, R. & Zhan, X., Jun 1 2020, In : Bioinformatics (Oxford, England). 36, 12, p. 3811-3817 7 p.

Research output: Contribution to journalArticle

Pulmonary Eosinophilic Granulomatosis with Polyangiitis Has IgG4 Plasma Cells and Immunoregulatory Features

Dong, Z. M., Lin, E., Wechsler, M. E., Weller, P. F., Klion, A. D., Bochner, B. S., Delker, D. A., Hazel, M. W., Fairfax, K., Khoury, P., Akuthota, P., Merkel, P. A., Dyer, A. M., Langford, C., Specks, U., Gleich, G. J., Chinchilli, V. M., Raby, B., Yandell, M. & Clayton, F., Jul 2020, In : American Journal of Pathology. 190, 7, p. 1438-1448 11 p.

Research output: Contribution to journalArticle

Risk factors of perioperative mortality from complicated peptic ulcer disease in Africa: Systematic review and meta-analysis

Peiffer, S., Pelton, M., Keeney, L., Kwon, E. G., Ofosu-Okromah, R., Acharya, Y., Chinchilli, V. M., Soybel, D., Oh, J. S. & Ssentongo, P., Feb 17 2020, In : BMJ Open Gastroenterology. 7, 1, e000350.

Research output: Contribution to journalReview article

Open Access

Risk of suicidal ideation, suicide attempts, and suicide deaths in persons with sleep apnea: Protocol for a systematic review and meta-analysis

Yang, Y., Ssentongo, A. E., Pan, Y., Ciarletta, M., Chinchilli, V. M. & Ssentongo, P., Jul 2020, In : PloS one. 15, 7 July, e0235379.

Research output: Contribution to journalArticle

Open Access

Sensitivity and specificity of information criteria

Dziak, J. J., Coffman, D. L., Lanza, S. T., Li, R. & Jermiin, L. S., Mar 23 2020, In : Briefings in bioinformatics. 21, 2, p. 553-565 13 p.

Research output: Contribution to journalReview article

4 Scopus citations

Statistical Inference for High-Dimensional Models via Recursive Online-Score Estimation

Shi, C., Song, R., Lu, W. & Li, R., Jan 1 2020, (Accepted/In press) In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

The genetic control of leaf allometry in the common bean, Phaseolus vulgaris

Zhang, M., Zhang, S., Ye, M., Jiang, L., Vallejos, C. E. & Wu, R., Mar 14 2020, In : BMC Genetics. 21, 1, 29.

Research output: Contribution to journalArticle

Open Access

Time-varying Effects of GABRG1 and Maladaptive Peer Behavior on Externalizing Behavior from Childhood to Adulthood: Testing Gene × Environment × Development Effects

Trucco, E. M., Yang, S., Yang, J. J., Zucker, R. A., Li, R. & Buu, A., Jul 1 2020, In : Journal of youth and adolescence. 49, 7, p. 1351-1364 14 p.

Research output: Contribution to journalArticle

Ultrahigh dimensional precision matrix estimation via refitted cross validation

Wang, L., Chen, Z., Wang, C. D. & Li, R., Mar 2020, In : Journal of Econometrics. 215, 1, p. 118-130 13 p.

Research output: Contribution to journalArticle

Open Access

Variable Selection and Feature Screening

Liu, W. & Li, R., Jan 1 2020, Advanced Studies in Theoretical and Applied Econometrics. Springer, p. 293-326 34 p. (Advanced Studies in Theoretical and Applied Econometrics; vol. 52).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

A Bayesian joint model of recurrent events and a terminal event

Li, Z., Chinchilli, V. M. & Wang, M., Jan 2019, In : Biometrical Journal. 61, 1, p. 187-202 16 p.

Research output: Contribution to journalArticle

2 Scopus citations

A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-k in human populations

Li, W., Lin, L., Malhotra, R., Yang, L., Acharya, R. & Poss, M., Mar 2019, In : PLoS computational biology. 15, 3, e1006564.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations