Research Output

2020

A Benchtop Method for Appending Protic Functional Groups to N-Heterocyclic Carbene Protected Gold Nanoparticles

DeJesus, J. F., Sherman, L. M., Yohannan, D. J., Becca, J. C., Strausser, S. L., Karger, L. F. P., Jensen, L., Jenkins, D. M. & Camden, J. P., May 4 2020, In : Angewandte Chemie - International Edition. 59, 19, p. 7585-7590 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

A General Strategy to Enhance Donor-Acceptor Molecules Using Solvent-Excluding Substituents

Hoelzel, C. A., Hu, H., Wolstenholme, C. H., Karim, B. A., Munson, K. T., Jung, K. H., Zhang, H., Liu, Y., Yennawar, H. P., Asbury, J. B., Li, X. & Zhang, X., Mar 16 2020, In : Angewandte Chemie - International Edition. 59, 12, p. 4785-4792 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

An Expedient Route to 9-arylmethylanthracene Derivatives via Tandem Ni-catalyzed Alkene Dicarbofunctionalization and Acid-promoted Cyclization-aromatization

Niroula, D., Sapkota, R. R., Dhungana, R. K., Shrestha, B. & Giri, R., Jan 1 2020, (Accepted/In press) In : Israel Journal of Chemistry.

Research output: Contribution to journalArticle

Anisotropic Optical and Frictional Properties of Langmuir–Blodgett Film Consisting of Uniaxially-Aligned Rod-Shaped Cellulose Nanocrystals

Chae, I., Ngo, D., Chen, Z., Kwansa, A. L., Chen, X., Meddeb, A. B., Podraza, N. J., Yingling, Y. G., Ounaies, Z. & Kim, S. H., May 1 2020, In : Advanced Materials Interfaces. 7, 9, 1902169.

Research output: Contribution to journalArticle

Artificial water channels enable fast and selective water permeation through water-wire networks

Song, W., Joshi, H., Chowdhury, R., Najem, J. S., Shen, Y. X., Lang, C., Henderson, C. B., Tu, Y. M., Farell, M., Pitz, M. E., Maranas, C. D., Cremer, P. S., Hickey, R. J., Sarles, S. A., Hou, J. L., Aksimentiev, A. & Kumar, M., Jan 1 2020, In : Nature nanotechnology. 15, 1, p. 73-79 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Assembly of Gold Nanowires on Gold Nanostripe Arrays: Simulation and Experiment

Jahanmahin, O., Kirby, D. J., Smith, B. D., Albright, C. A., Gobert, Z. A., Keating, C. D. & Fichthorn, K. A., Apr 30 2020, In : Journal of Physical Chemistry C. 124, 17, p. 9559-9571 13 p.

Research output: Contribution to journalArticle

Author Correction: Artificial water channels enable fast and selective water permeation through water-wire networks (Nature Nanotechnology, (2020), 15, 1, (73-79), 10.1038/s41565-019-0586-8)

Song, W., Joshi, H., Chowdhury, R., Najem, J. S., Shen, Y. X., Lang, C., Henderson, C. B., Tu, Y. M., Farell, M., Pitz, M. E., Maranas, C. D., Cremer, P. S., Hickey, R. J., Sarles, S. A., Hou, J. L., Aksimentiev, A. & Kumar, M., Feb 1 2020, In : Nature nanotechnology. 15, 2, 1 p.

Research output: Contribution to journalComment/debate

Open Access
1 Scopus citations

Beyond Guano-Doped Graphene

Schaak, R. E., Mar 24 2020, In : ACS nano. 14, 3, p. 2555-2556 2 p.

Research output: Contribution to journalEditorial

Open Access

Dynamic Ligand Surface Chemistry of Excited PbS Quantum Dots

Kennehan, E. R., Munson, K. T., Doucette, G. S., Marshall, A. R., Beard, M. C. & Asbury, J. B., Mar 19 2020, In : Journal of Physical Chemistry Letters. 11, 6, p. 2291-2297 7 p.

Research output: Contribution to journalArticle

Effects of Sucrose on Phase Transitions of Organic/Inorganic Aerosols

Ott, E. J. E., Tackman, E. C. & Freedman, M. A., Apr 16 2020, In : ACS Earth and Space Chemistry. 4, 4, p. 591-601 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Electrostatic Interactions Govern Extreme Nascent Protein Ejection Times from Ribosomes and Can Delay Ribosome Recycling

Nissley, D. A., Vu, Q. V., Trovato, F., Ahmed, N., Jiang, Y., Li, M. S. & O'Brien, E. P., Apr 1 2020, In : Journal of the American Chemical Society. 142, 13, p. 6103-6110 8 p.

Research output: Contribution to journalArticle

Erratum: Conformation of bis-nitroxide polarizing agents by multi-frequency EPR spectroscopy (Physical Chemistry Chemical Physics (2018) 20 (25506-25517) DOI: 10.1039/C8CP05236K)

Soetbeer, J., Gast, P., Walish, J. J., Zhao, Y., George, C., Yang, C., Swager, T. M., Griffin, R. G. & Mathies, G., Feb 28 2020, In : Physical Chemistry Chemical Physics. 22, 8, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Forcing the ribosome to change its message

Leininger, S. E., Deutsch, C. & O’Brien, E. P., May 15 2020, In : Journal of Biological Chemistry. 295, 20, p. 6809-6810 2 p.

Research output: Contribution to journalReview article

Open Access

Formation of Multiphase Complex Coacervates and Partitioning of Biomolecules within them

Mountain, G. A. & Keating, C. D., Feb 10 2020, In : Biomacromolecules. 21, 2, p. 630-640 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Hierarchical Markov State Model Building to Describe Molecular Processes

Wolfe, D. K., Persichetti, J. R., Sharma, A. K., Hudson, P. S., Woodcock, H. L. & O'brien, E. P., Mar 10 2020, In : Journal of Chemical Theory and Computation. 16, 3, p. 1816-1826 11 p.

Research output: Contribution to journalArticle

High-resolution iron X-ray absorption spectroscopic and computational studies of non-heme diiron peroxo intermediates

Cutsail, G. E., Blaesi, E. J., Pollock, C. J., Bollinger, J. M., Krebs, C. & DeBeer, S., Feb 2020, In : Journal of Inorganic Biochemistry. 203, 110877.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Interface-mediated noble metal deposition on transition metal dichalcogenide nanostructures

Sun, Y., Wang, Y., Chen, J. Y. C., Fujisawa, K., Holder, C. F., Miller, J. T., Crespi, V. H., Terrones, M. & Schaak, R. E., Mar 1 2020, In : Nature Chemistry. 12, 3, p. 284-293 10 p.

Research output: Contribution to journalArticle

Interpreting the chemical mechanism in SERS using a Raman bond model

Chen, R. & Jensen, L., Jan 14 2020, In : Journal of Chemical Physics. 152, 2, 024126.

Research output: Contribution to journalArticle

Open Access

Investigation of coarse-grained models across a glass transition

Szukalo, R. J. & Noid, W. G., Jan 1 2020, (Accepted/In press) In : Soft Materials.

Research output: Contribution to journalArticle

K2CO3-Catalyzed Synthesis of 2,5-Dialkyl-4,6,7-tricyano-Decorated Indoles via Carbon-Carbon Bond Cleavage

Pike, R. A. S., Sapkota, R. R., Shrestha, B., Dhungana, R. K., Kc, S., Dickie, D. A. & Giri, R., Apr 17 2020, In : Organic Letters. 22, 8, p. 3268-3272 5 p.

Research output: Contribution to journalArticle

Liquid-Liquid Phase Separation in Supermicrometer and Submicrometer Aerosol Particles

Freedman, M. A., Jun 16 2020, In : Accounts of Chemical Research. 53, 6, p. 1102-1110 9 p.

Research output: Contribution to journalArticle

Metabolomics and mass spectrometry imaging reveal channeled de novo purine synthesis in cells

Pareek, V., Tian, H., Winograd, N. & Benkovic, S. J., Apr 17 2020, In : Science. 368, 6488, p. 283-290 8 p.

Research output: Contribution to journalArticle

4 Scopus citations

Microfluidic deformability-activated sorting of single particles

Choi, G., Nouri, R., Zarzar, L. & Guan, W., Dec 1 2020, In : Microsystems and Nanoengineering. 6, 1, 11.

Research output: Contribution to journalArticle

Open Access

Nickel-Catalyzed α-Carbonylalkylarylation of Vinylarenes: Expedient Access to γ,γ-Diarylcarbonyl and Aryltetralone Derivatives

Shekhar, K. C., Dhungana, R. K., Khanal, N. & Giri, R., May 18 2020, In : Angewandte Chemie - International Edition. 59, 21, p. 8047-8051 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

Polyelectrolyte hydrogel capsules as stabilizers for reconfigurable complex emulsions

Balaj, R. V., Cho, S. W., Singh, P. & Zarzar, L. D., Jan 14 2020, In : Polymer Chemistry. 11, 2, p. 281-286 6 p.

Research output: Contribution to journalArticle

Rad6/Rad18 Competes with DNA Polymerases ν and δfor PCNA Encircling DNA

Li, M., Larsen, L. & Hedglin, M., Feb 4 2020, In : Biochemistry. 59, 4, p. 407-416 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Rational construction of a scalable heterostructured nanorod megalibrary

Steimle, B. C., Fenton, J. L. & Schaak, R. E., Jan 1 2020, In : Science. 367, 6476, p. 418-424 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

Shin, Y., Hedglin, M. & Murakami, K. S., Feb 28 2020, In : Nucleic acids research. 48, 4, p. 2144-2155 12 p.

Research output: Contribution to journalArticle

Open Access

T3P-promoted synthesis of a series of novel 2-aryl-3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-ones

Silverberg, L. J., Pacheco, C. N., Sahu, D., Mal, T., Scholl, P., Sobhi, H. F., Bradley, H. G., Cardenas, O. A., Gonzalez, K. M., Islam, J. M., Kimmel, E. G., Li, W., Perhonitch, K. C., Pothering, J. T., Potts, M. E., Ramirez, M. E., Reppert, H. E. & Shaffer, K. N., Apr 30 2020, In : Tetrahedron Letters. 61, 18, 151836.

Research output: Contribution to journalArticle

The czcD (NiCo) Riboswitch Responds to Iron(II)

Xu, J. & Cotruvo, Jr., J. A., Apr 21 2020, In : Biochemistry. 59, 15, p. 1508-1516 9 p.

Research output: Contribution to journalArticle

Tissue-specific changes in the RNA structurome mediate salinity response in Arabidopsis

Tack, D. C., Su, Z., Yu, Y., Bevilacqua, P. C. & Assmann, S. M., Jan 1 2020, In : RNA. 26, 4, p. 492-511 20 p.

Research output: Contribution to journalArticle

Open Access

Total Syntheses Supramolecular Style: Solid-State Construction of [2.2]Cyclophanes with Modular Control of Stereochemistry

Friščić, T., Elacqua, E., Dutta, S., Oburn, S. M. & MacGillivray, L. R., Apr 1 2020, In : Crystal Growth and Design. 20, 4, p. 2584-2589 6 p.

Research output: Contribution to journalArticle

Visualizing and Manipulating Biological Processes by Using HaloTag and SNAP-Tag Technologies

Hoelzel, C. A. & Zhang, X., Jan 1 2020, (Accepted/In press) In : ChemBioChem.

Research output: Contribution to journalReview article

Open Access
2019

2-C-methylated nucleotides terminate virus RNA synthesis by preventing active site closure of the viral RNA-dependent RNA polymerase

Boehr, A. K., Arnold, J. J., Oh, H. S., Cameron, C. E. & Boehr, D. D., Nov 8 2019, In : Journal of Biological Chemistry. 294, 45, p. 16897-16907 11 p.

Research output: Contribution to journalArticle

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

Sharma, A. K., Sormanni, P., Ahmed, N., Ciryam, P., Friedrich, U. A., Kramer, G. & O'Brien, E. P., Jan 1 2019, In : PLoS computational biology. 15, 5, e1007070.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Adaptive Shape Ripening and Interparticle Bridging of L-Arginine-Stabilized Silica Nanoparticles during Evaporative Colloidal Crystal Assembly

Russell, J. L., Tran, N. L. L. & Mallouk, T. E., Jan 30 2019, In : ACS Applied Materials and Interfaces. 11, 4, p. 4568-4577 10 p.

Research output: Contribution to journalArticle

A Fluorogenic AggTag Method Based on Halo- and SNAP-Tags to Simultaneously Detect Aggregation of Two Proteins in Live Cells

Jung, K. H., Kim, S. F., Liu, Y. & Zhang, X., Apr 15 2019, In : ChemBioChem. 20, 8, p. 1078-1087 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Analysis of local density potentials

Delyser, M. R. & Noid, W. G., Dec 14 2019, In : Journal of Chemical Physics. 151, 22, 224106.

Research output: Contribution to journalArticle

Analysis of RNA Methylation by Phylogenetically Diverse Cfr Radical S-Adenosylmethionine Enzymes Reveals an Iron-Binding Accessory Domain in a Clostridial Enzyme

Gumkowski, J. D., Martinie, R. J., Corrigan, P. S., Pan, J., Bauerle, M. R., Almarei, M., Booker, S. J., Silakov, A., Krebs, C. & Boal, A. K., Jun 27 2019, In : Biochemistry. 58, 29, p. 3169-3184 16 p.

Research output: Contribution to journalArticle

A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases

Rajakovich, L. J., Pandelia, M. E., Mitchell, A. J., Chang, W. C., Zhang, B., Boal, A. K., Krebs, C. & Bollinger, J. M., Mar 26 2019, In : Biochemistry. 58, 12, p. 1627-1647 21 p.

Research output: Contribution to journalArticle

2 Scopus citations

An N-nitrosating metalloenzyme constructs the pharmacophore of streptozotocin

Ng, T. L., Rohac, R., Mitchell, A. J., Boal, A. K. & Balskus, E. P., Feb 7 2019, In : Nature. 566, 7742, p. 94-99 6 p.

Research output: Contribution to journalArticle

16 Scopus citations

An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes

Bevilacqua, P. C., Harris, M. E., Piccirilli, J. A., Gaines, C., Ganguly, A., Kostenbader, K., Ekesan, Ş. & York, D. M., Jun 21 2019, In : ACS chemical biology. 14, 6, p. 1068-1076 9 p.

Research output: Contribution to journalReview article

9 Scopus citations
1 Scopus citations

A Periplasmic Binding Protein for Pyrroloquinoline Quinone

Ho, J. V. & Cotruvo, J. A., Jun 11 2019, In : Biochemistry. 58, 23, p. 2665-2669 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

A Selective, Protein-Based Fluorescent Sensor with Picomolar Affinity for Rare Earth Elements

Mattocks, J. A., Ho, J. V. & Cotruvo, J. A., Jan 1 2019, In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

15 Scopus citations

A SNAP-tag fluorogenic probe mimicking the chromophore of the red fluorescent protein Kaede

Jung, K. H., Fares, M., Grainger, L. S., Wolstenholme, C. H., Hou, A., Liu, Y. & Zhang, X., Jan 1 2019, In : Organic and Biomolecular Chemistry. 17, 7, p. 1906-1915 10 p.

Research output: Contribution to journalArticle

7 Scopus citations

A stepwise mechanism for aqueous two-phase system formation in concentrated antibody solutions

Rogers, B. A., Rembert, K. B., Poyton, M. F., Okur, H. I., Kale, A. R., Yang, T., Zhang, J. & Cremer, P. S., Aug 6 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 32, p. 15784-15791 8 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Atomistic Characterization of Plasmonic Dimers in the Quantum Size Regime

Liu, P., Chulhai, D. V. & Jensen, L., Jun 6 2019, In : Journal of Physical Chemistry C. 123, 22, p. 13900-13907 8 p.

Research output: Contribution to journalArticle