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2019

Carbon–carbon bond formation by metallaphotoredox catalysis

Nacsa, E. D. & Macmillan, D. W. C., Jan 1 2019, Organic Reactions. John Wiley and Sons Inc., p. 471-545 75 p. (Organic Reactions; vol. 100).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 11: Collective Behaviour of Artificial Microswimmers in Response to Environmental Conditions

Altemose, A. & Sen, A., Jan 1 2019, Self-organized Motion: Physicochemical Design based on Nonlinear Dynamics. Lagzi, I., Pimienta, V., Suematsu, N. J., Nakata, S. & Kitahata, H. (eds.). 14 ed. Royal Society of Chemistry, p. 250-283 34 p. (RSC Theoretical and Computational Chemistry Series; vol. 2019-January, no. 14).

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineering allostery into proteins

Gorman, S. D., D’Amico, R. N., Winston, D. S. & Boehr, D. D., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 359-384 26 p. (Advances in Experimental Medicine and Biology; vol. 1163).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

In Vivo Genome-Wide RNA Structure Probing with Structure-seq

Ritchey, L. E., Su, Z., Assmann, S. M. & Bevilacqua, P. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 305-341 37 p. (Methods in Molecular Biology; vol. 1933).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Metabolon formation by chemotaxis

Zhao, X. & Sen, A., 2019, Methods in Enzymology. Academic Press Inc., p. 45-62 18 p. (Methods in Enzymology; vol. 617).

Research output: Chapter in Book/Report/Conference proceedingChapter

Monitoring proteome stress in live cells using halotag-based fluorogenic sensor

Liu, Y., Fares, M. & Zhang, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 171-182 12 p. (Methods in Molecular Biology; vol. 1873).

Research output: Chapter in Book/Report/Conference proceedingChapter

The Alstoscholarisine Alkaloids: Isolation, Structure Determination, Biogenesis, Biological Evaluation, and Synthesis

Mason, J. D. & Weinreb, S. M., Jan 1 2019, Alkaloids: Chemistry and Biology. Knölker, H-J. (ed.). Academic Press Inc., p. 115-150 36 p. (Alkaloids: Chemistry and Biology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2018

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug and Play” Domain

Holliday, G. L., Akiva, E., Meng, E. C., Brown, S. D., Calhoun, S., Pieper, U., Sali, A., Booker, S. J. & Babbitt, P. C., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 1-71 71 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

16 Scopus citations

Biochemical Approaches for Understanding Iron–Sulfur Cluster Regeneration in Escherichia coli Lipoyl Synthase During Catalysis

McCarthy, E. L. & Booker, S. J., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 217-239 23 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Chemical Tools for Studying the Impact of cis/trans Prolyl Isomerization on Signaling: A Case Study on RNA Polymerase II Phosphatase Activity and Specificity

Burkholder, N. T., Medellin, B., Irani, S., Matthews, W., Showalter, S. A. & Zhang, Y. J., Jan 1 2018, Methods in Enzymology. Allen, K. N. (ed.). Academic Press Inc., p. 269-297 29 p. (Methods in Enzymology; vol. 607).

Research output: Chapter in Book/Report/Conference proceedingChapter

Detecting purinosome metabolon formation with fluorescence microscopy

Pedley, A. M. & Benkovic, S. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 279-289 11 p. (Methods in Molecular Biology; vol. 1764).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyphosphazenes as an example of the element-blocks approach to new materials

Allcock, H. R., Jan 1 2018, New Polymeric Materials Based on Element-Blocks. Springer Singapore, p. 167-188 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The Use of 13C Direct-Detect NMR to Characterize Flexible and Disordered Proteins

Cook, E. C., Usher, G. A. & Showalter, S. A., 2018, Methods in Enzymology. Rhoades, E. (ed.). Academic Press Inc., p. 81-100 20 p. (Methods in Enzymology; vol. 611).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Using Peptide Mimics to Study the Biosynthesis of the Side-Ring System of Nosiheptide

Wang, B., LaMattina, J. W., Badding, E. D., Gadsby, L. K., Grove, T. L. & Booker, S. J., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 241-268 28 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2017

Chapter 3: Structural Diversity in Fluorinated Polyphosphazenes: Exploring the Change from Crystalline Thermoplastics to High-performance Elastomers and Other New Materials

Allcock, H. R., Jan 1 2017, Fluorinated Polymers, Volume 1: Synthesis, Properties, Processing and Simulation. Tang, B. Z., Ameduri, B. & Sawada, H. (eds.). 24 ed. Royal Society of Chemistry, p. 54-79 26 p. (RSC Polymer Chemistry Series; vol. 2017-January, no. 24).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Mechanism-Based Strategies for Structural Characterization of Radical SAM Reaction Intermediates

Davis, K. M. & Boal, A. K., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 331-359 29 p. (Methods in Enzymology; vol. 595).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The role of iron-sulfur clusters in the biosynthesis of the lipoyl cofactor

Lanz, N. D. & Booker, S. J., Aug 21 2017, Characterization, Properties and Applications. Walter de Gruyter GmbH, Vol. 1. p. 327-358 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

TsrM as a Model for Purifying and Characterizing Cobalamin-Dependent Radical S-Adenosylmethionine Methylases

Blaszczyk, A. J., Wang, R. X. & Booker, S. J., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 303-329 27 p. (Methods in Enzymology; vol. 595).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations
2016

A High-Throughput Biological Calorimetry Core: Steps to Startup, Run, and Maintain a Multiuser Facility

Yennawar, N. H., Fecko, J. A., Showalter, S. A. & Bevilacqua, P. C., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 435-460 26 p. (Methods in Enzymology; vol. 567).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Assessing Coupled Protein Folding and Binding Through Temperature-Dependent Isothermal Titration Calorimetry

Sahu, D., Bastidas, M., Lawrence, C. W., Noid, W. G. & Showalter, S. A., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 23-45 23 p. (Methods in Enzymology; vol. 567).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Protein conformational motions: Enzyme catalysis

Huang, X., Tony Liu, C. & Benkovic, S. J., May 17 2016, Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 21-46 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2015

Mechanisms of 2-oxoglutarate-dependent oxygenases: The hydroxylation paradigm and beyond

Bollinger, Jr., J. M., Chang, W. C., Matthews, M. L., Martinie, R. J., Boal, A. K. & Krebs, C., Jan 1 2015, 2-Oxoglutarate-Dependent Oxygenases. Hausinger, R. P. & Schofield, C. J. (eds.). 3 ed. Royal Society of Chemistry, p. 95-122 28 p. (RSC Metallobiology; vol. 2015-January, no. 3).

Research output: Chapter in Book/Report/Conference proceedingChapter

36 Scopus citations

Quantitative point-of-care (POC) assays using measurements of time as the readout: A new type of readout for mHealth

Lewis, G. G. & Phillips, S. T., Jan 27 2015, Mobile Health Technologies: Methods and Protocols. Springer New York, p. 213-229 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Supramolecular Polymers

Elacqua, E., Ten Brummelhuis, N. & Weck, M., Jan 1 2015, Volume 3: Polymer Synthesis. wiley, Vol. 3-3. p. 71-92 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2014

Cluster secondary ion mass spectrometrys

Kozole, J. & Winograd, N., Jan 1 2014, Surface Analysis and Techniques in Biology. Springer International Publishing, p. 71-98 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Experimental approaches for measuring pKa's in RNA and DNA

Thaplyal, P. & Bevilacqua, P. C., 2014, Methods in Enzymology. C ed. Academic Press Inc., p. 189-219 31 p. (Methods in Enzymology; vol. 549, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

32 Scopus citations

Fluorinated Polyphosphazenes

Allcock, H. R., May 27 2014, Handbook of Fluoropolymer Science and Technology. Wiley-Blackwell, p. 1-20 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Phase separation as a possible means of nuclear compartmentalization

Aumiller, W. M., Davis, B. W. & Keating, C. D., Jan 1 2014, International Review of Cell and Molecular Biology. Elsevier Inc., p. 109-149 41 p. (International Review of Cell and Molecular Biology; vol. 307).

Research output: Chapter in Book/Report/Conference proceedingChapter

24 Scopus citations

Phosphazene high polymers

Allcock, H. R., Jan 1 2014, Phosphorus-Based Polymers: From Synthesis to Applications. Monge, S. & David, G. (eds.). 11 ed. Royal Society of Chemistry, p. 125-150 26 p. (RSC Polymer Chemistry Series; vol. 2014-January, no. 11).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The role of iron-sulfur clusters in the biosynthesis of the lipoyl cofactor

Lanz, N. D. & Booker, S. J., Jan 1 2014, Iron-Sulfur Clusters in Chemistry and Biology. Walter de Gruyter GmbH, p. 211-238 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations
2013

An integrated picture of HDV ribozyme catalysis

Golden, B. L., Hammes-Schiffer, S., Carey, P. R. & Bevilacqua, P. C., Jan 1 2013, Biophysics of RNA Folding. Springer New York, p. 135-167 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

12 Scopus citations

Cluster TOF-SIMS Imaging and the Characterization of Biological Materials

Vickerman, J. & Winograd, N., Apr 15 2013, Cluster Secondary Ion Mass Spectrometry: Principles and Applications. John Wiley and Sons, p. 269-312 44 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

12 Scopus citations

DNA Replication Fork, Bacterial

Spiering, M. M. & Benkovic, S. J., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 114-117 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Enzyme-gold nanoparticle bioconjugates: Quantification of particle stoichiometry and enzyme specific activity

Keighron, J. D. & Keating, C. D., Sep 3 2013, NanoBiotechnology Protocols. p. 163-174 12 p. (Methods in Molecular Biology; vol. 1026).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Scopus citations

Polyphosphazenes as biomaterials

Deng, M., Laurencin, C. T., Allcock, H. R. & Kumbar, S. G., Jan 1 2013, Polymeric Biomaterials: Structure and Function. CRC Press, Vol. 1. p. 84-126 43 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Systematic methods for structurally consistent coarse-grained models

Noid, W. G., 2013, Biomolecular Simulations: Biomolecular Simulations. Humana Press Inc., p. 487-531 45 p. (Methods in Molecular Biology; vol. 924).

Research output: Chapter in Book/Report/Conference proceedingChapter

40 Scopus citations

Three-dimensional, paper-based micro fluidic devices containing internal timers for running time-based diagnostic assays

Phillips, S. T. & Thom, N. K., 2013, Microfluidic Diagnostics: Methods and Protocols. Humana Press Inc., p. 185-196 12 p. (Methods in Molecular Biology; vol. 949).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Ultrafast infrared probes of electronic processes in materials

Asbury, J. B., Jan 1 2013, Ultrafast Infrared Vibrational Spectroscopy. CRC Press, p. 239-267 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2012

Analysis of rna folding and ligand binding by conventional and high-throughput calorimetry

Sokoloski, J. E. & Bevilacqua, P. C., Jul 27 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 145-174 30 p. (Methods in Molecular Biology; vol. 905).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Mechanistic analysis of the Hepatitis Delta Virus (HDV) ribozyme: Methods for RNA preparation, structure mapping, solvent isotope effects, and co-transcriptional cleavage

Chadalavada, D. M., Cerrone-Szakal, A. L., Wilcox, J. L., Siegfried, N. A. & Bevilacqua, P. C., Mar 19 2012, Ribozymes: Methods and Protocols. Hartig, J. (ed.). p. 21-40 20 p. (Methods in Molecular Biology; vol. 848).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Molecular self-assemblies in co-crystals: Engineering chemical reactivity and organic semiconductors

Friščić, T., Varshney, D. B., Elacqua, E., Sumrak, J. C., Sokolov, A. N. & MacGillivray, L. R., Oct 31 2012, Molecular Self-Assembly: Advances and Applications. Pan Stanford Publishing Pte. Ltd., p. 223-238 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

RlmN and AtsB as models for the overproduction and characterization of radical SAM proteins

Lanz, N. D., Grove, T. L., Gogonea, C. B., Lee, K. H., Krebs, C. & Booker, S. J., 2012, Methods in Enzymology. Academic Press Inc., p. 125-152 28 p. (Methods in Enzymology; vol. 516).

Research output: Chapter in Book/Report/Conference proceedingChapter

64 Scopus citations

Silver nanoparticle antimicrobials and related materials

Zhang, H., Wu, M. & Sen, A., Apr 1 2012, Nano-Antimicrobials: Progress and Prospects. Springer-Verlag Berlin Heidelberg, Vol. 9783642244285. p. 3-45 43 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

19 Scopus citations
2011

Calculating the Raman and HyperRaman Spectra of Large Molecules and Molecules Interacting with Nanoparticles

Valley, N., Jensen, L., Autschbach, J. & Schatz, G. C., Jul 5 2011, Computational Methods for Large Systems: Electronic Structure Approaches for Biotechnology and Nanotechnology. John Wiley and Sons, p. 493-514 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Towards a minimal cytoplasm

Keighron, J. D. & Keating, C. D., Dec 1 2011, The Minimal Cell: The Biophysics of Cell Compartment and the Origin of Cell Functionality. Springer Netherlands, p. 3-30 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

10 Scopus citations
2010

Computational Spectroscopy in Environmental Chemistry

Kubicki, J. D. & Mueller, K. T., Oct 11 2010, Computational Spectroscopy: Methods, Experiments and Applications. John Wiley and Sons, p. 323-351 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations

Design and assembly of high-aspect-ratio silica-encapsulated nanostructures for nanoelectronics applications

Kovtyukhova, N. I., Dec 1 2010, Nanomaterials and Supramolecular Structures: Physics, Chemistry, and Applications. Springer Netherlands, p. 329-345 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Efficient Explicitly Correlated Coupled-Cluster Approximations

Werner, H. J., Adler, T. B., Knizia, G. & Manby, F. R., Jan 1 2010, Challenges and Advances in Computational Chemistry and Physics. Springer, p. 573-619 47 p. (Challenges and Advances in Computational Chemistry and Physics; vol. 11).

Research output: Chapter in Book/Report/Conference proceedingChapter

60 Scopus citations

Lipid detection, identification, and imaging single cells with SIMS

Heien, M. L., Piehowski, P. D., Winograd, N. & Ewing, A. G., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 85-97 13 p. (Methods in Molecular Biology; vol. 656).

Research output: Chapter in Book/Report/Conference proceedingChapter

12 Scopus citations

Lipoic acid biosynthesis and enzymology

Billgren, E. S., Cicchillo, R. M., Nesbitt, N. M. & Booker, S. J., Mar 1 2010, Comprehensive Natural Products II: Chemistry and Biology. Elsevier Ltd, Vol. 7. p. 181-212 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations