Research Output 1949 2019

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2019
1 Citation (Scopus)

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

Sharma, A. K., Sormanni, P., Ahmed, N., Ciryam, P., Friedrich, U. A., Kramer, G. & O'Brien, Jr., E. P., May 1 2019, In : PLoS computational biology. 15, 5, p. e1007070

Research output: Contribution to journalArticle

Open Access
Chemical Kinetics
Elongation
Profiling
ribosomes
Stem cells

Adaptive Shape Ripening and Interparticle Bridging of L-Arginine-Stabilized Silica Nanoparticles during Evaporative Colloidal Crystal Assembly

Russell, J. L., Tran, N. L. L. & Mallouk, T. E., Jan 30 2019, In : ACS Applied Materials and Interfaces. 11, 4, p. 4568-4577 10 p.

Research output: Contribution to journalArticle

Arginine
Silicon Dioxide
Colloids
Silica
Nanoparticles

A Fluorogenic AggTag Method Based on Halo- and SNAP-Tags to Simultaneously Detect Aggregation of Two Proteins in Live Cells

Jung, K. H., Kim, S. F., Liu, Y. & Zhang, X., Apr 15 2019, In : ChemBioChem. 20, 8, p. 1078-1087 10 p.

Research output: Contribution to journalArticle

Agglomeration
Proteins
Ligands
Neurodegenerative Diseases
Bearings (structural)
1 Citation (Scopus)

A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases

Rajakovich, L. J., Pandelia, M. E., Mitchell, A. J., Chang, W. C., Zhang, B., Boal, A. K., Krebs, C. & Bollinger, Jr., J. M., Mar 26 2019, In : Biochemistry. 58, 12, p. 1627-1647 21 p.

Research output: Contribution to journalArticle

Organophosphonates
Oxygenases
Iron
Degradation
gamma-Butyrobetaine Dioxygenase

A Periplasmic Binding Protein for Pyrroloquinoline Quinone

Ho, J. V. & Cotruvo, Jr., J. A., Jun 11 2019, In : Biochemistry. 58, 23, p. 2665-2669 5 p.

Research output: Contribution to journalArticle

PQQ Cofactor
Periplasmic Binding Proteins
Methylobacterium extorquens
Carrier Proteins
Lanthanoid Series Elements
4 Citations (Scopus)
Lanthanoid Series Elements
Rare earth elements
Proteins
Methylobacterium extorquens
Sensors
2 Citations (Scopus)

A SNAP-tag fluorogenic probe mimicking the chromophore of the red fluorescent protein Kaede

Jung, K. H., Fares, M., Grainger, L. S., Wolstenholme, C. H., Hou, A., Liu, Y. & Zhang, X., Jan 1 2019, In : Organic and Biomolecular Chemistry. 17, 7, p. 1906-1915 10 p.

Research output: Contribution to journalArticle

SNAP
Chromophores
chromophores
proteins
probes

Atomistic Characterization of Plasmonic Dimers in the Quantum Size Regime

Liu, P., Chulhai, D. V. & Jensen, L., Jun 6 2019, In : Journal of Physical Chemistry C. 123, 22, p. 13900-13907 8 p.

Research output: Contribution to journalArticle

Plasmons
plasmons
Dimers
dimers
Charge transfer
5 Citations (Scopus)

Bacterial FtsZ protein forms phase-separated condensates with its nucleoid-associated inhibitor SlmA

Monterroso, B., Zorrilla, S., Sobrinos-Sanguino, M., Robles-Ramos, M. A., López-Álvarez, M., Margolin, W., Keating, C. D. & Rivas, G., Jan 1 2019, In : EMBO Reports. 20, 1, e45946.

Research output: Contribution to journalArticle

Bacterial Proteins
Phase separation
Condensation
Bacterial Physiological Phenomena
Intracellular Space
1 Citation (Scopus)
S-Adenosylmethionine
Biosynthesis
Peptides
C1 peptide
Acids

Catalytic Conversion of Ethanol to Liquid Hydrocarbons by Tin-Promoted Raney Nickel Supported on Alumina

Mandal, S. & Sen, A., Apr 22 2019, In : ACS Applied Energy Materials. 2, 4, p. 2398-2401 4 p.

Research output: Contribution to journalArticle

Tin
Aluminum Oxide
Hydrocarbons
Nickel
Ethanol
1 Citation (Scopus)

Cationic Gold(I) Diarylallenylidene Complexes: Bonding Features and Ligand Effects

Sorbelli, D., Nunes dos Santos Comprido, L., Knizia, G., Hashmi, A. S. K., Belpassi, L., Belanzoni, P. & Klein, J. E. M. N., Jul 2 2019, In : ChemPhysChem. 20, 13, p. 1671-1679 9 p.

Research output: Contribution to journalArticle

Open Access
Gold
gold
Ligands
ligands
Chemical shift

Charge Transfer Dynamics in Aqueous Dye-Sensitized Photoelectrochemical Cells: Implications for Water Splitting Efficiency

Xu, P. & Mallouk, T. E., Oct 1 2019, In : Journal of Physical Chemistry C. 123, 1, p. 299-305 7 p.

Research output: Contribution to journalArticle

Photoelectrochemical cells
water splitting
Charge transfer
Coloring Agents
Dyes

C-O Bond Dissociation and Induced Chemical Ionization Using High Energy (CO2)n+ Gas Cluster Ion Beam

Tian, H., Maciążek, D., Postawa, Z., Garrison, B. J. & Winograd, N., Mar 15 2019, In : Journal of the American Society for Mass Spectrometry. 30, 3, p. 476-481 6 p.

Research output: Contribution to journalArticle

Ion beams
Ionization
Gases
Ions
Oxygen
1 Citation (Scopus)

Competing Polar and Antipolar Structures in the Ruddlesden-Popper Layered Perovskite Li2SrNb2O7

Uppuluri, R., Akamatsu, H., Sen Gupta, A., Wang, H., Brown, C. M., Agueda Lopez, K. E., Alem, N., Gopalan, V. & Mallouk, T. E., Jun 25 2019, In : Chemistry of Materials. 31, 12, p. 4418-4425 8 p.

Research output: Contribution to journalArticle

Perovskite
Antiferroelectric materials
Ferroelectricity
Neutron diffraction
Synchrotrons
4 Citations (Scopus)

Conjugated Block Copolymers as Model Systems to Examine Mechanisms of Charge Generation in Donor–Acceptor Materials

Aplan, M. P., Grieco, C., Lee, Y., Munro, J. M., Lee, W., Gray, J. L., Seibers, Z. D., Kuei, B., Litofsky, J. H., Kilbey, S. M., Wang, Q., Dabo, I., Asbury, J. B. & Gomez, E. D., Jan 4 2019, In : Advanced Functional Materials. 29, 1, 1804858.

Research output: Contribution to journalArticle

block copolymers
Block copolymers
Charge transfer
charge transfer
Nanoparticles

Controlled Rapid Formation of Polyurethane at 700 K: Thermodynamic and Kinetic Consequences of Extreme Photothermal Heating

Van Burns, E. N. & Lear, B. J., Jun 13 2019, In : Journal of Physical Chemistry C. 123, 23, p. 14774-14780 7 p.

Research output: Contribution to journalArticle

Polyurethanes
Thermodynamics
Heating
thermodynamics
Kinetics

Correlated spatially resolved two-dimensional electronic and linear absorption spectroscopy

Steves, M. A., Zheng, H. & Knappenberger, K., Apr 15 2019, In : Optics Letters. 44, 8, p. 2117-2120 4 p.

Research output: Contribution to journalArticle

absorption spectroscopy
spatial resolution
temporal resolution
electronics
optical spectrum
1 Citation (Scopus)

Counter Cations Affect Transport in Aqueous Hydroxide Solutions with Ion Specificity

Drexler, C. I., Miller, T. C., Rogers, B. A., Li, Y. C., Daly, C. A., Yang, T., Corcelli, S. A. & Cremer, P. S., May 1 2019, In : Journal of the American Chemical Society. 141, 17, p. 6930-6936 7 p.

Research output: Contribution to journalArticle

Cations
Protons
Lithium
Positive ions
Sodium

Design of highly active double-pseudoknotted ribozymes: A combined computational and experimental study

Yamagami, R., Kayedkhordeh, M., Mathews, D. H. & Bevilacqua, P. C., Jan 10 2019, In : Nucleic acids research. 47, 1, p. 29-42 14 p.

Research output: Contribution to journalArticle

Catalytic RNA
RNA Folding
Riboswitch
RNA
Synthetic Biology
1 Citation (Scopus)

Domain topology, stability, and translation speed determine mechanical force generation on the ribosome

Leininger, S. E., Trovato, F., Nissley, D. A. & O'Brien, Jr., E. P., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 12, p. 5523-5532 10 p.

Research output: Contribution to journalArticle

Ribosomes
Proteins
Statistical Models
Proteome
Phenotype

Doubly resonant sum frequency spectroscopy of mixed photochromic isomers on surfaces reveals conformation-specific vibronic effects

Raab, M., Becca, J. C., Heo, J., Lim, C. K., Baev, A., Jensen, L., Prasad, P. N. & Velarde, L., Mar 21 2019, In : Journal of Chemical Physics. 150, 11, 114704.

Research output: Contribution to journalArticle

Isomers
Conformations
Natural frequencies
isomers
Spectroscopy

Dual approach for effective potentials that accurately model structure and energetics

Lebold, K. M. & Noid, W. G., Jun 21 2019, In : Journal of Chemical Physics. 150, 23, 234107.

Research output: Contribution to journalArticle

Open Access
Model structures
degrees of freedom
Degrees of freedom (mechanics)
Potential energy
Nuclear energy
2 Citations (Scopus)

Effect of Micromorphology on Alkaline Polymer Electrolyte Stability

Han, J., Pan, J., Chen, C., Wei, L., Wang, Y., Pan, Q., Zhao, N., Xie, B., Xiao, L., Lu, J. & Zhuang, L., Jan 9 2019, In : ACS Applied Materials and Interfaces. 11, 1, p. 469-477 9 p.

Research output: Contribution to journalArticle

Chemical stability
Electrolytes
Polymers
Cations
Positive ions

Enhanced Ion Yields Using High Energy Water Cluster Beams for Secondary Ion Mass Spectrometry Analysis and Imaging

Sheraz, S., Tian, H., Vickerman, J. C., Blenkinsopp, P., Winograd, N. & Cumpson, P., May 28 2019, In : Analytical Chemistry. 91, 14, p. 9058-9068 11 p.

Research output: Contribution to journalArticle

Secondary ion mass spectrometry
Ions
Imaging techniques
Water
Argon

Epoxidation of Alkenes by Peracids: From Textbook Mechanisms to a Quantum Mechanically Derived Curly-Arrow Depiction

Klein, J. E. M. N., Knizia, G. & Rzepa, H. S., Jan 1 2019, In : ChemistryOpen.

Research output: Contribution to journalArticle

Open Access
Peracetic Acid
Epoxidation
Textbooks
Alkenes
Teaching
2 Citations (Scopus)

Ferredoxins as interchangeable redox components in support of MiaB, a radical S-adenosylmethionine methylthiotransferase

Arcinas, A. J., Maiocco, S. J., Elliott, S. J., Silakov, A. & Booker, S. J., Jan 1 2019, In : Protein Science. 28, 1, p. 267-282 16 p.

Research output: Contribution to journalArticle

Flavodoxin
Thermotoga maritima
Ferredoxins
S-Adenosylmethionine
Oxidation-Reduction

Fight the flow: The role of shear in artificial rheotaxis for individual and collective motion

Baker, R., Kauffman, J. E., Laskar, A., Shklyaev, O. E., Potomkin, M., Dominguez-Rubio, L., Shum, H., Cruz-Rivera, Y., Aronson, I., Balazs, A. C. & Sen, A., Jun 14 2019, In : Nanoscale. 11, 22, p. 10944-10951 8 p.

Research output: Contribution to journalArticle

Nanorods
Microfluidics
Fluids
Biomimetics
Platinum

General Solution-Phase Synthesis of Nanoscale Transition Metal Tellurides Using Metal Nanoparticle Reagents

Fenton, J. L., Fagan, A. M. & Schaak, R. E., Jan 1 2019, In : European Journal of Inorganic Chemistry. 2019, 30, p. 3490-3493 4 p.

Research output: Contribution to journalArticle

Metal nanoparticles
Transition metals
Nanoparticles
Metals
Tellurium

High-resolution tip-enhanced Raman scattering probes sub-molecular density changes

Chen, X., Liu, P., Hu, Z. & Jensen, L., Dec 1 2019, In : Nature communications. 10, 1, 2567.

Research output: Contribution to journalArticle

Open Access
Molecular Probes
Raman Spectrum Analysis
Raman spectroscopy
Raman scattering
Raman spectra

How Protein Binding Sensitizes the Nucleosome to Histone H3K56 Acetylation

Lee, J. & Lee, T., Mar 15 2019, In : ACS chemical biology. 14, 3, p. 506-515 10 p.

Research output: Contribution to journalArticle

Acetylation
Nucleosomes
Protein Binding
Histones
DNA

Hydrogen Donation but not Abstraction by a Tyrosine (Y68) during Endoperoxide Installation by Verruculogen Synthase (FtmOx1)

Dunham, N. P., Del Río Pantoja, J. M., Zhang, B., Rajakovich, L. J., Allen, B. D., Krebs, C., Boal, A. K. & Bollinger, Jr., J. M., Jun 26 2019, In : Journal of the American Chemical Society. 141, 25, p. 9964-9979 16 p.

Research output: Contribution to journalArticle

Tyrosine
Hydrogen
Atoms
Carbon
Iron

Identifying A- and P-site locations on ribosome-protected mRNA fragments using Integer Programming

Ahmed, N., Sormanni, P., Ciryam, P., Vendruscolo, M., Dobson, C. M. & O'Brien, Jr., E. P., Dec 1 2019, In : Scientific reports. 9, 1, 6256.

Research output: Contribution to journalArticle

Open Access
Ribosomes
Messenger RNA
Codon
Camellia
Reading Frames
2 Citations (Scopus)

In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC)

Mitchell, D., Renda, A. J., Douds, C. A., Babitzke, P. L., Assmann, S. M. & Bevilacqua, P. C., Jan 1 2019, In : RNA. 25, 1, p. 147-157 11 p.

Research output: Contribution to journalArticle

Ethyldimethylaminopropyl Carbodiimide
Uracil
Guanine
Base Pairing
Glyoxal
1 Citation (Scopus)

Ionization probability of sputtered indium under irradiation with 20-keV fullerene and argon gas cluster projectiles

Wucher, A., Breuer, L. & Winograd, N., Apr 1 2019, In : International Journal of Mass Spectrometry. 438, p. 13-21 9 p.

Research output: Contribution to journalArticle

Fullerenes
Indium
Argon
Projectiles
fullerenes

Light-Induced Convective Segregation of Different Sized Microparticles

Manna, R. K., Shklyaev, O. E., Kauffman, J., Tansi, B., Sen, A. & Balazs, A. C., May 15 2019, In : ACS Applied Materials and Interfaces. 11, 19, p. 18004-18012 9 p.

Research output: Contribution to journalArticle

Gold
Nanoparticles
Sorting
Fluids
Buoyancy

Lipid Vesicle-Coated Complex Coacervates

Pir Cakmak, F., Grigas, A. T. & Keating, C. D., Jun 18 2019, In : Langmuir. 35, 24, p. 7830-7840 11 p.

Research output: Contribution to journalArticle

Phospholipids
RNA
Lipids
lipids
bioreactors

Local Structure and Bonding of Carbon Nanothreads Probed by High-Resolution Transmission Electron Microscopy

Juhl, S. J., Wang, T., Vermilyea, B., Li, X., Crespi, V. H., Badding, J. V. & Alem, N., May 1 2019, In : Journal of the American Chemical Society. 141, 17, p. 6937-6945 9 p.

Research output: Contribution to journalArticle

High resolution electron microscopy
High resolution transmission electron microscopy
Transmission Electron Microscopy
Electron Microscopy
Electron Energy-Loss Spectroscopy
1 Citation (Scopus)

Lowerature Magnetism in Nanoscale Gold Revealed through Variableerature Magnetic Circular Dichroism Spectroscopy

Herbert, P. J., Window, P., Ackerson, C. J. & Knappenberger, K., Jan 17 2019, In : Journal of Physical Chemistry Letters. 10, 2, p. 189-193 5 p.

Research output: Contribution to journalArticle

Circular dichroism spectroscopy
Magnetism
Gold
dichroism
gold

Mechanochemistry in Translation

Leininger, S. E., Narayan, K., Deutsch, C. & O'Brien, Jr., E. P., Jan 1 2019, In : Biochemistry.

Research output: Contribution to journalArticle

Peptidyl Transferases
Protein folding
Protein Folding
Ribosomes
Tunnels

Modulation of Cu 2+ Binding to Sphingosine-1-Phosphate by Lipid Charge

Baxter, A. J., Santiago-Ruiz, A. N., Yang, T. & Cremer, P. S., Jan 22 2019, In : Langmuir. 35, 3, p. 824-830 7 p.

Research output: Contribution to journalArticle

Sphingosines
Lipids
lipids
phosphates
Phosphates

Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants

Chekan, J. R., Ongpipattanakul, C., Wright, T. R., Zhang, B., Bollinger, Jr., J. M., Rajakovich, L. J., Krebs, C., Cicchillo, R. M. & Nair, S. K., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 27, p. 13299-13304 6 p.

Research output: Contribution to journalArticle

Open Access
Dioxygenases
Genetically Modified Plants
Herbicides
2,4-Dichlorophenoxyacetic Acid
Indoleacetic Acids
3 Citations (Scopus)

Molecular SIMS Ionization Probability Studied with Laser Postionization: Influence of the Projectile Cluster

Breuer, L., Tian, H., Wucher, A. & Winograd, N., Oct 1 2019, In : Journal of Physical Chemistry C. 123, 1, p. 565-574 10 p.

Research output: Contribution to journalArticle

Projectiles
Secondary ion mass spectrometry
secondary ion mass spectrometry
Ionization
projectiles

Multi-Step Topochemical Pathway to Metastable Mo2AlB2 and Related Two-Dimensional Nanosheet Heterostructures

Alameda, L. T., Lord, R. W., Barr, J. A., Moradifar, P., Metzger, Z. P., Steimle, B. C., Holder, C. F., Alem, N., Sinnott, S. B. & Schaak, R. E., Jul 10 2019, In : Journal of the American Chemical Society. 141, 27, p. 10852-10861 10 p.

Research output: Contribution to journalArticle

Nanosheets
Heterojunctions
Boron Compounds
Temperature
Borides
3 Citations (Scopus)

Nonadditive Ion Effects Drive Both Collapse and Swelling of Thermoresponsive Polymers in Water

Bruce, E. E., Bui, P. T., Rogers, B. A., Cremer, P. S. & Van Der Vegt, N. F. A., Apr 24 2019, In : Journal of the American Chemical Society. 141, 16, p. 6609-6616 8 p.

Research output: Contribution to journalArticle

Anions
Swelling
Polymers
Negative ions
Ions

Optical spectroscopy study of Ca3(Ru0.91Mn0.09)2O7 single crystal in high magnetic fields

Xu, X., Peng, J., Zhang, J., Ma, Z., Chen, C., Han, J., Liu, B., Lin, L., Wu, X., Mao, Z., Qu, Z. & Sheng, Z., 2019, In : Science Bulletin. 64, 1, p. 20-25 6 p.

Research output: Contribution to journalArticle

orbitals
single crystals
magnetic fields
spectroscopy
transition metals
1 Citation (Scopus)

Organization of Particle Islands through Light-Powered Fluid Pumping

Tansi, B. M., Peris, M. L., Shklyaev, O. E., Balazs, A. C. & Sen, A., Feb 18 2019, In : Angewandte Chemie - International Edition. 58, 8, p. 2295-2299 5 p.

Research output: Contribution to journalArticle

Fluids
Drug delivery
Propulsion
Pumps
Nanoparticles
1 Citation (Scopus)

Parsing redox potentials of five ferredoxins found within Thermotoga maritima

Maiocco, S. J., Arcinas, A. J., Booker, S. J. & Elliott, S. J., Jan 1 2019, In : Protein Science. 28, 1, p. 257-266 10 p.

Research output: Contribution to journalArticle

Thermotoga maritima
Ferredoxins
Oxidation-Reduction
Bearings (structural)
Proteins
17 Citations (Scopus)

Photoredox-mediated remote C(sp 3 )-H heteroarylation of free alcohols

Li, G. X., Hu, X., He, G. & Chen, G., Jan 1 2019, In : Chemical Science. 10, 3, p. 688-693 6 p.

Research output: Contribution to journalArticle

Alcohols
Oxidants
Iodine
Catalysis
Molecules

Photothermal Control over the Mechanical and Physical Properties of Polydimethylsiloxane

Fortenbaugh, R. J., Carrozzi, S. A. & Lear, B. J., Jan 1 2019, In : Macromolecules.

Research output: Contribution to journalArticle

Polydimethylsiloxane
Curing
Physical properties
Thermosets
Mechanical properties