Research Output 1949 2020

Filter
Review article
2019
3 Citations (Scopus)

An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes

Bevilacqua, P. C., Harris, M. E., Piccirilli, J. A., Gaines, C., Ganguly, A., Kostenbader, K., Ekesan, Ş. & York, D. M., Jun 21 2019, In : ACS chemical biology. 14, 6, p. 1068-1076 9 p.

Research output: Contribution to journalReview article

RNA Cleavage
Catalytic RNA
Ontology
RNA
Enzymes

Atomistic electrodynamics simulations of plasmonic nanoparticles

Chen, X., Liu, P. & Jensen, L., Jul 3 2019, In : Journal of Physics D: Applied Physics. 52, 36, 363002.

Research output: Contribution to journalReview article

Electrodynamics
electrodynamics
Nanoparticles
nanoparticles
simulation

Do Diradicals Behave like Radicals?

Stuyver, T., Chen, B., Zeng, T., Geerlings, P., De Proft, F. & Hoffmann, R., Nov 13 2019, In : Chemical Reviews. 119, 21, p. 11291-11351 61 p.

Research output: Contribution to journalReview article

Dimerization
Interchanges
Molecular orbitals
Ground state
Electronic structure
1 Citation (Scopus)

Epitaxial graphene/silicon carbide intercalation: A minireview on graphene modulation and unique 2D materials

Briggs, N., Gebeyehu, Z. M., Vera, A., Zhao, T., Wang, K., De La Fuente Duran, A., Bersch, B., Bowen, T., Knappenberger, K. & Robinson, J. A., Sep 7 2019, In : Nanoscale. 11, 33, p. 15440-15447 8 p.

Research output: Contribution to journalReview article

Graphite
Intercalation
Silicon carbide
Graphene
Modulation
1 Citation (Scopus)

Generational biodegradable and regenerative polyphosphazene polymers and their blends with poly (lactic-co-glycolic acid)

Ogueri, K. S., Allcock, H. R. & Laurencin, C. T., Nov 2019, In : Progress in Polymer Science. 98, 101146.

Research output: Contribution to journalReview article

Polymers
glycolic acid
Biocompatible Materials
acids
Acids
1 Citation (Scopus)

Mechanochemistry in Translation

Leininger, S. E., Narayan, K., Deutsch, C. & O'Brien, E. P., Nov 26 2019, In : Biochemistry. 58, 47, p. 4657-4666 10 p.

Research output: Contribution to journalReview article

Peptidyl Transferases
Protein folding
Protein Folding
Ribosomes
Tunnels
1 Citation (Scopus)
Open Access
Methanosarcina
S-Adenosylmethionine
Vitamin B 12
Archaea
Methane

Probing RNA structure in vivo

Mitchell, D., Assmann, S. M. & Bevilacqua, P. C., Dec 2019, In : Current Opinion in Structural Biology. 59, p. 151-158 8 p.

Research output: Contribution to journalReview article

RNA
Ethyldimethylaminopropyl Carbodiimide
Glyoxal
Genome
Ficusin
3 Citations (Scopus)

Single-molecule FRET method to investigate the dynamics of transcription elongation through the nucleosome by RNA polymerase II

Lee, J., Crickard, J. B., Reese, J. C. & Lee, T., Apr 15 2019, In : Methods. 159-160, p. 51-58 8 p.

Research output: Contribution to journalReview article

Nucleosomes
RNA Polymerase II
Transcription
Elongation
Molecules

The immune system mimics a pathogen

Boal, A. K., Nov 1 2019, In : Science. 366, 6465, p. 574-575 2 p.

Research output: Contribution to journalReview article

Methylmalonyl-CoA Mutase
Host-Pathogen Interactions
Immune System
4 Citations (Scopus)

Tutorial on Powder X-ray Diffraction for Characterizing Nanoscale Materials

Holder, C. F. & Schaak, R. E., Jul 23 2019, In : ACS nano. 13, 7, p. 7359-7365 7 p.

Research output: Contribution to journalReview article

X ray powder diffraction
diffraction
x rays
2018
63 Citations (Scopus)

Best Practices for Reporting Electrocatalytic Performance of Nanomaterials

Voiry, D., Chhowalla, M., Gogotsi, Y., Kotov, N. A., Li, Y., Penner, R. M., Schaak, R. E. & Weiss, P. S., Oct 23 2018, In : ACS nano. 12, 10, p. 9635-9638 4 p.

Research output: Contribution to journalReview article

Nanostructured materials
7 Citations (Scopus)

Complexity in pH-Dependent Ribozyme Kinetics: Dark pKa Shifts and Wavy Rate-pH Profiles

Frankel, E. A. & Bevilacqua, P. C., Feb 6 2018, In : Biochemistry. 57, 5, p. 483-488 6 p.

Research output: Contribution to journalReview article

Catalytic RNA
Catalysis
RNA
Protons
Protonation
7 Citations (Scopus)

Engineered control of enzyme structural dynamics and function

Boehr, D. D., D'Amico, R. N. & O'Rourke, K. F., Apr 2018, In : Protein Science. 27, 4, p. 825-838 14 p.

Research output: Contribution to journalReview article

Structural dynamics
Enzymes
Catalytic Domain
Protein Engineering
Post Translational Protein Processing
9 Citations (Scopus)

Gas Cluster Ion Beams for Secondary Ion Mass Spectrometry

Winograd, N., Jun 12 2018, In : Annual Review of Analytical Chemistry. 11, p. 29-48 20 p.

Research output: Contribution to journalReview article

Secondary ion mass spectrometry
Ion beams
Gases
Depth profiling
Kinetic energy
9 Citations (Scopus)

Liquid–liquid phase separation in artificial cells

Crowe, C. D. & Keating, C. D., Oct 6 2018, In : Interface Focus. 8, 5

Research output: Contribution to journalReview article

Artificial Cells
Biological Phenomena
Phase separation
Cytoplasm
Large scale systems
9 Citations (Scopus)

Non-equilibrium coupling of protein structure and function to translation–elongation kinetics

Sharma, A. K. & O'Brien, Jr., E. P., Apr 1 2018, In : Current Opinion in Structural Biology. 49, p. 94-103 10 p.

Research output: Contribution to journalReview article

Proteins
Natural Science Disciplines
Messenger RNA
Protein Folding
Physics
19 Citations (Scopus)

Physical Principles and Extant Biology Reveal Roles for RNA-Containing Membraneless Compartments in Origins of Life Chemistry

Poudyal, R. R., Pir Cakmak, F., Keating, C. D. & Bevilacqua, P. C., May 1 2018, In : Biochemistry. 57, 17, p. 2509-2519 11 p.

Research output: Contribution to journalReview article

RNA
Liquids
Phase separation
Prebiotics
Biomolecules
20 Citations (Scopus)

Soft chemistry of ion-exchangeable layered metal oxides

Uppuluri, R., Sen Gupta, A., Rosas, A. S. & Mallouk, T. E., Apr 7 2018, In : Chemical Society Reviews. 47, 7, p. 2401-2430 30 p.

Research output: Contribution to journalReview article

Oxides
Metals
Ions
Chemical reactions
Transition metals
47 Citations (Scopus)

Transition Metal-Catalyzed Dicarbofunctionalization of Unactivated Olefins

Dhungana, R. K., Shekhar, K. C., Basnet, P. & Giri, R., Sep 1 2018, In : Chemical Record. 18, 9, p. 1314-1340 27 p.

Research output: Contribution to journalReview article

Open Access
Alkenes
Olefins
Transition metals
Metals
Bearings (structural)
2017
13 Citations (Scopus)

Ammonium Additives to Dissolve Lithium Sulfide through Hydrogen Binding for High-Energy Lithium-Sulfur Batteries

Pan, H., Han, K. S., Vijayakumar, M., Xiao, J., Cao, R., Chen, J., Zhang, J., Mueller, K. T., Shao, Y. & Liu, J., Feb 8 2017, In : ACS Applied Materials and Interfaces. 9, 5, p. 4290-4295 6 p.

Research output: Contribution to journalReview article

Ammonium Compounds
Electrolytes
Hydrogen
Lithium
Sulfur
79 Citations (Scopus)

A New View into the Regulation of Purine Metabolism: The Purinosome

Pedley, A. M. & Benkovic, S. J., Feb 1 2017, In : Trends in Biochemical Sciences. 42, 2, p. 141-154 14 p.

Research output: Contribution to journalReview article

Metabolism
Multienzyme Complexes
Mitochondria
Enzymes
Metabolites
118 Citations (Scopus)

Beyond the Hofmeister Series: Ion-Specific Effects on Proteins and Their Biological Functions

Okur, H. I., Hladílková, J., Rembert, K. B., Cho, Y., Heyda, J., Dzubiella, J., Cremer, P. S. & Jungwirth, P., Mar 9 2017, In : Journal of Physical Chemistry B. 121, 9, p. 1997-2014 18 p.

Research output: Contribution to journalReview article

Ions
proteins
Proteins
ions
Salts
10 Citations (Scopus)

Biodegradable Polyphosphazene-Based Blends for Regenerative Engineering

Ogueri, K. S., Ivirico, J. L. E., Nair, L. S., Allcock, H. R. & Laurencin, C. T., Mar 1 2017, In : Regenerative Engineering and Translational Medicine. 3, 1, p. 15-31 17 p.

Research output: Contribution to journalReview article

Biocompatible Materials
Biomaterials
Tissue
Polymers
Regeneration
59 Citations (Scopus)

Chemically Propelled Molecules and Machines

Dey, K. K. & Sen, A., Jun 14 2017, In : Journal of the American Chemical Society. 139, 23, p. 7666-7676 11 p.

Research output: Contribution to journalReview article

Biomimetics
Pumps
Molecules
Fluidics
Propulsion
40 Citations (Scopus)

Collaborative routes to clarifying the murky waters of aqueous supramolecular chemistry

Cremer, P. S., Flood, A. H., Gibb, B. C. & Mobley, D. L., Dec 19 2017, In : Nature Chemistry. 10, 1, p. 8-16 9 p.

Research output: Contribution to journalReview article

Supramolecular chemistry
Water
Biochemistry
Planets
Earth (planet)
16 Citations (Scopus)

Eukaryotic Translesion DNA Synthesis on the Leading and Lagging Strands: Unique Detours around the Same Obstacle

Hedglin, M. & Benkovic, S. J., Jun 28 2017, In : Chemical Reviews. 117, 12, p. 7857-7877 21 p.

Research output: Contribution to journalReview article

DNA
Damage tolerance
Cells
Cell death
DNA-Directed DNA Polymerase
33 Citations (Scopus)
organelles
Biomolecules
Cells
Liquids
compartments
53 Citations (Scopus)

'Fuelled' motion: Phoretic motility and collective behaviour of active colloids

Illien, P., Golestanian, R. & Sen, A., Sep 21 2017, In : Chemical Society Reviews. 46, 18, p. 5508-5518 11 p.

Research output: Contribution to journalReview article

Colloids
Propulsion
Hydrodynamics
Fabrication
2 Citations (Scopus)

In Silicon Approach for Discovery of Chemopreventive Agents

Wang, J., Li, W., Wang, B., Hu, B., Jiang, H., Lai, B., Li, N. & Cheng, M., Aug 1 2017, In : Current Pharmacology Reports. 3, 4, p. 184-195 12 p.

Research output: Contribution to journalReview article

Drug Design
Disclosure
Silicon
Drug Discovery
Molecular Biology

Our First and Next Decades at ACS Nano

Chan, W. C. W., Chhowalla, M., Glotzer, S., Gogotsi, Y., Hafner, J. H., Hammond, P. T., Hersam, M. C., Javey, A., Kagan, C. R., Kataoka, K., Khademhosseini, A., Kotov, N. A., Lee, S. T., Li, Y., Möhwald, H., Mulvaney, P., Nel, A. E., Nordlander, P. J., Parak, W. J., Penner, R. M. & 7 others, Rogach, A. L., Schaak, R. E., Stevens, M. M., Wee, A. T. S., Willson, C. G., Fernandez, L. E. & Weiss, P. S., Aug 22 2017, In : ACS nano. 11, 8, p. 7553-7555 3 p.

Research output: Contribution to journalReview article

28 Citations (Scopus)

Phase separation in organic aerosol

Freedman, M. A., Dec 21 2017, In : Chemical Society Reviews. 46, 24, p. 7694-7705 12 p.

Research output: Contribution to journalReview article

Aerosols
Phase separation
Liquids
Phase transitions
Efflorescence
8 Citations (Scopus)

Semi-empirical refinements of crystal structures using 17O quadrupolar-coupling tensors

Holmes, S. T., Iuliucci, R. J., Mueller, K. T. & Dybowski, C., Feb 14 2017, In : Journal of Chemical Physics. 146, 6, 064201.

Research output: Contribution to journalReview article

Tensors
Crystal structure
tensors
crystal structure
deviation
7 Citations (Scopus)

Stable Open-Shell Phosphorane Based on a Redox-Active Amidodiphenoxide Scaffold

Pistner, A. J., Moon, H. W., Silakov, A., Yennawar, H. P. & Radosevich, A. T., Aug 7 2017, In : Inorganic chemistry. 56, 15, p. 8661-8668 8 p.

Research output: Contribution to journalReview article

Phosphoranes
Scaffolds
Phosphorus Compounds
phosphorus compounds
Oxidation
15 Citations (Scopus)

The Effect of Pressure on Organic Reactions in Fluids—a New Theoretical Perspective

Chen, B., Hoffmann, R. & Cammi, R., Jan 1 2017, In : Angewandte Chemie - International Edition. 56, 37, p. 11126-11142 17 p.

Research output: Contribution to journalReview article

Open Access
Cycloaddition
Pulse code modulation
Ethylene
Alkadienes
Cyclopentanes
4 Citations (Scopus)

Understanding DNA replication by the bacteriophage T4 replisome

Benkovic, S. J. & Spiering, M. M., Jan 1 2017, In : Journal of Biological Chemistry. 292, 45, p. 18434-18442 9 p.

Research output: Contribution to journalReview article

Bacteriophage T4
Bacteriophages
DNA Replication
DNA
Proteins
75 Citations (Scopus)

Water splitting dye-sensitized solar cells

Xu, P., McCool, N. S. & Mallouk, T. E., Jun 1 2017, In : Nano Today. 14, p. 42-58 17 p.

Research output: Contribution to journalReview article

Coloring Agents
Photocathodes
Dyes
Water
Solar Energy
2016
36 Citations (Scopus)

Catalytic Motors-Quo Vadimus?

Dey, K. K., Wong, F., Altemose, A. & Sen, A., Feb 1 2016, In : Current Opinion in Colloid and Interface Science. 21, p. 4-13 10 p.

Research output: Contribution to journalReview article

micromotors
Micromotors
Robotic assembly
directional control
fluidics
68 Citations (Scopus)

Genome-Wide Analysis of RNA Secondary Structure

Bevilacqua, P. C., Ritchey, L. E., Su, Z. & Assmann, S. M., Nov 23 2016, In : Annual Review of Genetics. 50, p. 235-266 32 p.

Research output: Contribution to journalReview article

Genome
RNA
Base Pairing
RNA Splicing
RNA Probes
43 Citations (Scopus)

Synthetic Micro/Nanomotors and Pumps: Fabrication and Applications

Wong, F., Dey, K. K. & Sen, A., Jul 1 2016, In : Annual Review of Materials Research. 46, p. 407-432 26 p.

Research output: Contribution to journalReview article

Pumps
Fabrication
Propulsion
Flow of fluids
Mechanics
2015
17 Citations (Scopus)

A generalized-Yvon-Born-Green method for coarse-grained modeling: Advances, Challenges, and Insight

Rudzinski, J. F. & Noid, W. G., Sep 26 2015, In : European Physical Journal: Special Topics. 224, 12, p. 2193-2216 24 p.

Research output: Contribution to journalReview article

Statistical mechanics
Inverse problems
Peptides
Integral equations
Large scale systems
39 Citations (Scopus)

Auxiliary iron-sulfur cofactors in radical SAM enzymes

Lanz, N. D. & Booker, S. J., Jun 1 2015, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1853, 6, p. 1316-1334 19 p.

Research output: Contribution to journalReview article

Sulfur
Methionine
Iron
Enzymes
Protein S
159 Citations (Scopus)

Chemical conversion pathways for carbohydrates

Chatterjee, C., Pong, F. & Sen, A., Jan 1 2015, In : Green Chemistry. 17, 1, p. 40-71 32 p.

Research output: Contribution to journalReview article

Carbohydrates
carbohydrate
Biomass
Polysaccharides
polysaccharide
8 Citations (Scopus)

Coordinated DNA replication by the bacteriophage T4 replisome

Noble, E., Spiering, M. M. & Benkovic, S. J., Jun 19 2015, In : Viruses. 7, 6, p. 3186-3200 15 p.

Research output: Contribution to journalReview article

Bacteriophage T4
DNA Replication
Proteins
Holoenzymes
DNA
24 Citations (Scopus)

Imaging mass spectrometry on the nanoscale with cluster ion beams

Winograd, N., Jan 6 2015, In : Analytical chemistry. 87, 1, p. 328-333 6 p.

Research output: Contribution to journalReview article

Projectiles
Ion beams
Mass spectrometry
Imaging techniques
Secondary ion mass spectrometry
134 Citations (Scopus)

Infrared fibers

Tao, G., Ebendorff-Heidepriem, H., Stolyarov, A. M., Danto, S., Badding, J. V., Fink, Y., Ballato, J. & Abouraddy, A. F., Jun 30 2015, In : Advances in Optics and Photonics. 7, 2, p. 379-458 80 p.

Research output: Contribution to journalReview article

fibers
electrical engineering
fabrication
materials science
infrared spectra
81 Citations (Scopus)

Mechanistic diversity of radical S-adenosylmethionine (SAM)-dependent methylation

Bauerle, M. R., Schwalm, E. L. & Booker, S. J., Feb 13 2015, In : Journal of Biological Chemistry. 290, 7, p. 3995-4002 8 p.

Research output: Contribution to journalReview article

S-Adenosylmethionine
Methylation
Carbon
Atoms
Enzymes
39 Citations (Scopus)

Mössbauer spectroscopy of Fe/S proteins

Pandelia, M. E., Lanz, N. D., Booker, S. J. & Krebs, C., Jun 1 2015, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1853, 6, p. 1395-1405 11 p.

Research output: Contribution to journalReview article

Protein S
Spectrum Analysis
Hydrogenase
Electron Spin Resonance Spectroscopy
Sulfur
66 Citations (Scopus)

Perspectives on electrostatics and conformational motions in enzyme catalysis

Hanoian, P., Liu, C. T., Hammes-Schiffer, S. & Benkovic, S., Feb 17 2015, In : Accounts of Chemical Research. 48, 2, p. 482-489 8 p.

Research output: Contribution to journalReview article

Catalysis
Electrostatics
Tetrahydrofolate Dehydrogenase
Hydrides
Enzymes
21 Citations (Scopus)

Potential Sites for Ice Nucleation on Aluminosilicate Clay Minerals and Related Materials

Freedman, M. A., Oct 1 2015, In : Journal of Physical Chemistry Letters. 6, 19, p. 3850-3858 9 p.

Research output: Contribution to journalReview article

Aluminosilicates
Ice
Clay minerals
clays
ice