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Review article
2020

Forcing the ribosome to change its message

Leininger, S. E., Deutsch, C. & O’Brien, E. P., May 15 2020, In : Journal of Biological Chemistry. 295, 20, p. 6809-6810 2 p.

Research output: Contribution to journalReview article

Open Access

Visualizing and Manipulating Biological Processes by Using HaloTag and SNAP-Tag Technologies

Hoelzel, C. A. & Zhang, X., Jan 1 2020, (Accepted/In press) In : ChemBioChem.

Research output: Contribution to journalReview article

Open Access
2019

An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes

Bevilacqua, P. C., Harris, M. E., Piccirilli, J. A., Gaines, C., Ganguly, A., Kostenbader, K., Ekesan, Ş. & York, D. M., Jun 21 2019, In : ACS chemical biology. 14, 6, p. 1068-1076 9 p.

Research output: Contribution to journalReview article

9 Scopus citations

Atomistic electrodynamics simulations of plasmonic nanoparticles

Chen, X., Liu, P. & Jensen, L., Jul 3 2019, In : Journal of Physics D: Applied Physics. 52, 36, 363002.

Research output: Contribution to journalReview article

Do Diradicals Behave like Radicals?

Stuyver, T., Chen, B., Zeng, T., Geerlings, P., De Proft, F. & Hoffmann, R., Nov 13 2019, In : Chemical Reviews. 119, 21, p. 11291-11351 61 p.

Research output: Contribution to journalReview article

9 Scopus citations

Epitaxial graphene/silicon carbide intercalation: A minireview on graphene modulation and unique 2D materials

Briggs, N., Gebeyehu, Z. M., Vera, A., Zhao, T., Wang, K., De La Fuente Duran, A., Bersch, B., Bowen, T., Knappenberger, K. L. & Robinson, J. A., Sep 7 2019, In : Nanoscale. 11, 33, p. 15440-15447 8 p.

Research output: Contribution to journalReview article

2 Scopus citations

Generational biodegradable and regenerative polyphosphazene polymers and their blends with poly (lactic-co-glycolic acid)

Ogueri, K. S., Allcock, H. R. & Laurencin, C. T., Nov 2019, In : Progress in Polymer Science. 98, 101146.

Research output: Contribution to journalReview article

4 Scopus citations

Mechanochemistry in Translation

Leininger, S. E., Narayan, K., Deutsch, C. & O'Brien, E. P., Nov 26 2019, In : Biochemistry. 58, 47, p. 4657-4666 10 p.

Research output: Contribution to journalReview article

3 Scopus citations
Open Access
3 Scopus citations

Probing RNA structure in vivo

Mitchell, D., Assmann, S. M. & Bevilacqua, P. C., Dec 2019, In : Current Opinion in Structural Biology. 59, p. 151-158 8 p.

Research output: Contribution to journalReview article

4 Scopus citations

Single-molecule FRET method to investigate the dynamics of transcription elongation through the nucleosome by RNA polymerase II

Lee, J., Crickard, J. B., Reese, J. C. & Lee, T. H., Apr 15 2019, In : Methods. 159-160, p. 51-58 8 p.

Research output: Contribution to journalReview article

4 Scopus citations

The immune system mimics a pathogen

Boal, A. K., Nov 1 2019, In : Science. 366, 6465, p. 574-575 2 p.

Research output: Contribution to journalReview article

Tutorial on Powder X-ray Diffraction for Characterizing Nanoscale Materials

Holder, C. F. & Schaak, R. E., Jul 23 2019, In : ACS nano. 13, 7, p. 7359-7365 7 p.

Research output: Contribution to journalReview article

28 Scopus citations
2018

Best Practices for Reporting Electrocatalytic Performance of Nanomaterials

Voiry, D., Chhowalla, M., Gogotsi, Y., Kotov, N. A., Li, Y., Penner, R. M., Schaak, R. E. & Weiss, P. S., Oct 23 2018, In : ACS nano. 12, 10, p. 9635-9638 4 p.

Research output: Contribution to journalReview article

100 Scopus citations

Complexity in pH-Dependent Ribozyme Kinetics: Dark pKa Shifts and Wavy Rate-pH Profiles

Frankel, E. A. & Bevilacqua, P. C., Feb 6 2018, In : Biochemistry. 57, 5, p. 483-488 6 p.

Research output: Contribution to journalReview article

10 Scopus citations

Engineered control of enzyme structural dynamics and function

Boehr, D. D., D'Amico, R. N. & O'Rourke, K. F., Apr 2018, In : Protein Science. 27, 4, p. 825-838 14 p.

Research output: Contribution to journalReview article

8 Scopus citations

Gas Cluster Ion Beams for Secondary Ion Mass Spectrometry

Winograd, N., Jun 12 2018, In : Annual Review of Analytical Chemistry. 11, p. 29-48 20 p.

Research output: Contribution to journalReview article

17 Scopus citations

Liquid–liquid phase separation in artificial cells

Crowe, C. D. & Keating, C. D., Oct 6 2018, In : Interface Focus. 8, 5

Research output: Contribution to journalReview article

12 Scopus citations

Non-equilibrium coupling of protein structure and function to translation–elongation kinetics

Sharma, A. K. & O'Brien, E. P., Apr 2018, In : Current Opinion in Structural Biology. 49, p. 94-103 10 p.

Research output: Contribution to journalReview article

10 Scopus citations

Physical Principles and Extant Biology Reveal Roles for RNA-Containing Membraneless Compartments in Origins of Life Chemistry

Poudyal, R. R., Pir Cakmak, F., Keating, C. D. & Bevilacqua, P. C., May 1 2018, In : Biochemistry. 57, 17, p. 2509-2519 11 p.

Research output: Contribution to journalReview article

27 Scopus citations

Soft chemistry of ion-exchangeable layered metal oxides

Uppuluri, R., Sen Gupta, A., Rosas, A. S. & Mallouk, T. E., Apr 7 2018, In : Chemical Society Reviews. 47, 7, p. 2401-2430 30 p.

Research output: Contribution to journalReview article

34 Scopus citations

Transition Metal-Catalyzed Dicarbofunctionalization of Unactivated Olefins

Dhungana, R. K., Shekhar, K. C., Basnet, P. & Giri, R., Sep 2018, In : Chemical Record. 18, 9, p. 1314-1340 27 p.

Research output: Contribution to journalReview article

Open Access
72 Scopus citations
2017

Ammonium Additives to Dissolve Lithium Sulfide through Hydrogen Binding for High-Energy Lithium-Sulfur Batteries

Pan, H., Han, K. S., Vijayakumar, M., Xiao, J., Cao, R., Chen, J., Zhang, J., Mueller, K. T., Shao, Y. & Liu, J., Feb 8 2017, In : ACS Applied Materials and Interfaces. 9, 5, p. 4290-4295 6 p.

Research output: Contribution to journalReview article

19 Scopus citations

A New View into the Regulation of Purine Metabolism: The Purinosome

Pedley, A. M. & Benkovic, S. J., Feb 1 2017, In : Trends in Biochemical Sciences. 42, 2, p. 141-154 14 p.

Research output: Contribution to journalReview article

93 Scopus citations

Beyond the Hofmeister Series: Ion-Specific Effects on Proteins and Their Biological Functions

Okur, H. I., Hladílková, J., Rembert, K. B., Cho, Y., Heyda, J., Dzubiella, J., Cremer, P. S. & Jungwirth, P., Mar 9 2017, In : Journal of Physical Chemistry B. 121, 9, p. 1997-2014 18 p.

Research output: Contribution to journalReview article

144 Scopus citations

Biodegradable Polyphosphazene-Based Blends for Regenerative Engineering

Ogueri, K. S., Ivirico, J. L. E., Nair, L. S., Allcock, H. R. & Laurencin, C. T., Mar 1 2017, In : Regenerative Engineering and Translational Medicine. 3, 1, p. 15-31 17 p.

Research output: Contribution to journalReview article

13 Scopus citations

Chemically Propelled Molecules and Machines

Dey, K. K. & Sen, A., Jun 14 2017, In : Journal of the American Chemical Society. 139, 23, p. 7666-7676 11 p.

Research output: Contribution to journalReview article

69 Scopus citations

Collaborative routes to clarifying the murky waters of aqueous supramolecular chemistry

Cremer, P. S., Flood, A. H., Gibb, B. C. & Mobley, D. L., Dec 19 2017, In : Nature Chemistry. 10, 1, p. 8-16 9 p.

Research output: Contribution to journalReview article

51 Scopus citations

Eukaryotic Translesion DNA Synthesis on the Leading and Lagging Strands: Unique Detours around the Same Obstacle

Hedglin, M. & Benkovic, S. J., Jun 28 2017, In : Chemical Reviews. 117, 12, p. 7857-7877 21 p.

Research output: Contribution to journalReview article

17 Scopus citations
43 Scopus citations

'Fuelled' motion: Phoretic motility and collective behaviour of active colloids

Illien, P., Golestanian, R. & Sen, A., Sep 21 2017, In : Chemical Society Reviews. 46, 18, p. 5508-5518 11 p.

Research output: Contribution to journalReview article

61 Scopus citations

In Silicon Approach for Discovery of Chemopreventive Agents

Wang, J., Li, W., Wang, B., Hu, B., Jiang, H., Lai, B., Li, N. & Cheng, M., Aug 1 2017, In : Current Pharmacology Reports. 3, 4, p. 184-195 12 p.

Research output: Contribution to journalReview article

2 Scopus citations

Our First and Next Decades at ACS Nano

Chan, W. C. W., Chhowalla, M., Glotzer, S., Gogotsi, Y., Hafner, J. H., Hammond, P. T., Hersam, M. C., Javey, A., Kagan, C. R., Kataoka, K., Khademhosseini, A., Kotov, N. A., Lee, S. T., Li, Y., Möhwald, H., Mulvaney, P., Nel, A. E., Nordlander, P. J., Parak, W. J., Penner, R. M. & 7 others, Rogach, A. L., Schaak, R. E., Stevens, M. M., Wee, A. T. S., Willson, C. G., Fernandez, L. E. & Weiss, P. S., Aug 22 2017, In : ACS nano. 11, 8, p. 7553-7555 3 p.

Research output: Contribution to journalReview article

Phase separation in organic aerosol

Freedman, M. A., Dec 21 2017, In : Chemical Society Reviews. 46, 24, p. 7694-7705 12 p.

Research output: Contribution to journalReview article

31 Scopus citations

Semi-empirical refinements of crystal structures using 17O quadrupolar-coupling tensors

Holmes, S. T., Iuliucci, R. J., Mueller, K. T. & Dybowski, C., Feb 14 2017, In : Journal of Chemical Physics. 146, 6, 064201.

Research output: Contribution to journalReview article

10 Scopus citations

Stable Open-Shell Phosphorane Based on a Redox-Active Amidodiphenoxide Scaffold

Pistner, A. J., Moon, H. W., Silakov, A., Yennawar, H. P. & Radosevich, A. T., Aug 7 2017, In : Inorganic chemistry. 56, 15, p. 8661-8668 8 p.

Research output: Contribution to journalReview article

9 Scopus citations

The Effect of Pressure on Organic Reactions in Fluids—a New Theoretical Perspective

Chen, B., Hoffmann, R. & Cammi, R., Jan 1 2017, In : Angewandte Chemie - International Edition. 56, 37, p. 11126-11142 17 p.

Research output: Contribution to journalReview article

Open Access
19 Scopus citations

Understanding DNA replication by the bacteriophage T4 replisome

Benkovic, S. J. & Spiering, M. M., Nov 10 2017, In : Journal of Biological Chemistry. 292, 45, p. 18434-18442 9 p.

Research output: Contribution to journalReview article

5 Scopus citations

Water splitting dye-sensitized solar cells

Xu, P., McCool, N. S. & Mallouk, T. E., Jun 2017, In : Nano Today. 14, p. 42-58 17 p.

Research output: Contribution to journalReview article

89 Scopus citations
2016

Catalytic Motors-Quo Vadimus?

Dey, K. K., Wong, F., Altemose, A. & Sen, A., Feb 1 2016, In : Current Opinion in Colloid and Interface Science. 21, p. 4-13 10 p.

Research output: Contribution to journalReview article

38 Scopus citations

Genome-Wide Analysis of RNA Secondary Structure

Bevilacqua, P. C., Ritchey, L. E., Su, Z. & Assmann, S. M., Nov 23 2016, In : Annual review of genetics. 50, p. 235-266 32 p.

Research output: Contribution to journalReview article

84 Scopus citations

Synthetic Micro/Nanomotors and Pumps: Fabrication and Applications

Wong, F., Dey, K. K. & Sen, A., Jul 1 2016, In : Annual Review of Materials Research. 46, p. 407-432 26 p.

Research output: Contribution to journalReview article

44 Scopus citations
2015

A generalized-Yvon-Born-Green method for coarse-grained modeling: Advances, Challenges, and Insight

Rudzinski, J. F. & Noid, W. G., Sep 26 2015, In : European Physical Journal: Special Topics. 224, 12, p. 2193-2216 24 p.

Research output: Contribution to journalReview article

19 Scopus citations

Auxiliary iron-sulfur cofactors in radical SAM enzymes

Lanz, N. D. & Booker, S. J., Jun 1 2015, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1853, 6, p. 1316-1334 19 p.

Research output: Contribution to journalReview article

42 Scopus citations

Chemical conversion pathways for carbohydrates

Chatterjee, C., Pong, F. & Sen, A., Jan 1 2015, In : Green Chemistry. 17, 1, p. 40-71 32 p.

Research output: Contribution to journalReview article

179 Scopus citations

Coordinated DNA replication by the bacteriophage T4 replisome

Noble, E., Spiering, M. M. & Benkovic, S. J., Jun 19 2015, In : Viruses. 7, 6, p. 3186-3200 15 p.

Research output: Contribution to journalReview article

9 Scopus citations

Imaging mass spectrometry on the nanoscale with cluster ion beams

Winograd, N., Jan 6 2015, In : Analytical chemistry. 87, 1, p. 328-333 6 p.

Research output: Contribution to journalReview article

28 Scopus citations

Infrared fibers

Tao, G., Ebendorff-Heidepriem, H., Stolyarov, A. M., Danto, S., Badding, J. V., Fink, Y., Ballato, J. & Abouraddy, A. F., Jun 30 2015, In : Advances in Optics and Photonics. 7, 2, p. 379-458 80 p.

Research output: Contribution to journalReview article

152 Scopus citations

Mechanistic diversity of radical S-adenosylmethionine (SAM)-dependent methylation

Bauerle, M. R., Schwalm, E. L. & Booker, S. J., Feb 13 2015, In : Journal of Biological Chemistry. 290, 7, p. 3995-4002 8 p.

Research output: Contribution to journalReview article

90 Scopus citations

Mössbauer spectroscopy of Fe/S proteins

Pandelia, M. E., Lanz, N. D., Booker, S. J. & Krebs, C., Jun 1 2015, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1853, 6, p. 1395-1405 11 p.

Research output: Contribution to journalReview article

44 Scopus citations