Department of Biochemistry and Molecular Biology

  • United States

Research Output 1969 2019

Filter
Comment/debate
2019
Open Access
Dietary Sucrose
Sodium Hydroxide
Sodium Chloride

Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity (Nature Genetics, (2018), 50, 1, (26-41), 10.1038/s41588-017-0011-x)

CHD Exome+ Consortium, EPIC-CVD Consortium, ExomeBP Consortium, Global Lipids Genetic Consortium, GoT2D Genes Consortium, EPIC InterAct Consortium, INTERVAL Study, ReproGen Consortium, T2D-Genes Consortium, The MAGIC Investigators & Understanding Society Scientific Group, Jan 1 2019, (Accepted/In press) In : Nature Genetics.

Research output: Contribution to journalComment/debate

Open Access
Energy Intake
Energy Metabolism
Body Mass Index
Obesity
Proteins
2018

Dynamic chromatin accessibility unveils a regulatory landscape in early embryogenesis in human

Liu, T. & Yue, F., Dec 1 2018, In : Biology of reproduction. 99, 6, p. 1116-1118 3 p.

Research output: Contribution to journalComment/debate

Chromatin
Embryonic Development
9 Citations (Scopus)
Manuscripts
Neoplasms
Chromosomes
Uveal melanoma
2017
1 Citation (Scopus)

Corrigendum: Harnessing Nature's Diversity: Discovering organophosphate bioscavenger characteristics among low molecular weight proteins

Jacob, R. B., Michaels, K. C., Anderson, C. J., Fay, J. M. & Dokholyan, N., Apr 28 2017, In : Scientific reports. 7, 1 p.

Research output: Contribution to journalComment/debate

Open Access
2 Citations (Scopus)

Corrigendum: The 4D nucleome project (Nature (2017) 549 (219-226) DOI: 10.1038/nature23884)

4D Nucleome Network, Dec 14 2017, In : Nature. 552, 7684, 1 p.

Research output: Contribution to journalComment/debate

Open Access
health
director
funding
1 Citation (Scopus)

Disinhibition of somatostatin-positive interneurons by deletion of postsynaptic GABA A receptors

Fuchs, T., Jefferson, S. J., Hooper, A., Yee, P. H. P., Maguire, J. & Luscher, B., Jun 1 2017, In : Molecular Psychiatry. 22, 6, 1 p.

Research output: Contribution to journalComment/debate

Interneurons
GABA-A Receptors
Somatostatin

Erratum to: PARP10 deficiency manifests by severe developmental delay and DNA repair defect (Neurogenetics, (2016), 17, (227-232), 10.1007/s10048-016-0493-1)

Shahrour, M. A., Nicolae, C. M., Edvardson, S., Ashhab, M., Galvan, A. M., Constantin, D., Abu-Libdeh, B., Moldovan, G. L. & Elpeleg, O., Jan 1 2017, In : Neurogenetics. 18, 1, 1 p.

Research output: Contribution to journalComment/debate

DNA Repair
1 Citation (Scopus)

Erratum to: PARP10 deficiency manifests by severe developmental delay and DNA repair defect (neurogenetics, (2016), 17, 4, (227-232), 10.1007/s10048-016-0493-1)

Shahrour, M. A., Nicolae, C. M., Edvardson, S., Ashhab, M., Galvan, A. M., Constantin, D., Abu-Libdeh, B., Moldovan, G. L. & Elpeleg, O., Apr 1 2017, In : Neurogenetics. 18, 2, 1 p.

Research output: Contribution to journalComment/debate

Organized Financing
DNA Repair
Financial Management
2 Citations (Scopus)
Protein folding
protein folding
Protein Folding
folding
proteins
1 Citation (Scopus)

STAT5 alters the state of transcriptional networks, driving aggressive leukemia

Dovat, S. & Payne, K. J., May 18 2017, In : Nature Immunology. 18, 6, p. 597-598 2 p.

Research output: Contribution to journalComment/debate

Gene Regulatory Networks
Leukemia
2016

A complicated case of plasma exchange

Potochny, E. M., Domen, R. E., Caldwell, T. & Castellani, W., Feb 1 2016, In : Transfusion. 56, 2, p. 296 1 p.

Research output: Contribution to journalComment/debate

Plasma Exchange

ERKing Trypanosoma: PCNA phosphorylation as novel target

Nicolae, C. M. & Moldovan, G. L., Dec 1 2016, In : Cell Cycle. 15, 23, p. 3167-3168 2 p.

Research output: Contribution to journalComment/debate

Trypanosoma
Trypanosoma brucei brucei
Proliferating Cell Nuclear Antigen
Phosphorylation
1 Citation (Scopus)

Erratum: Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol(Proceedings of the National Academy of Sciences of the United States of America (2016) 2 DOI: 10.1073/pnas.1600298113)

Duin, E. C., Wagner, T., Shima, S., Prakash, D., Cronin, B., Yáñez-Ruiz, D. R., Duval, S., Rümbeli, R., Stemmler, R. T., Thauer, R. K. & Kindermann, M., May 31 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 22, p. E3185

Research output: Contribution to journalComment/debate

9 Citations (Scopus)

Histone deacetylase inhibitors as cancer therapeutics

Clawson, G., Aug 1 2016, In : Annals of Translational Medicine. 4, 15, 287.

Research output: Contribution to journalComment/debate

Histone Deacetylase Inhibitors
Histone Deacetylases
Epigenomics
Protein Isoforms
Neoplasms
2 Citations (Scopus)

The Wnt/β-catenin pathway is activated by miR-1246 in liver cancer stem cells

Eshelman, M. A. & Yochum, G., Jan 1 2016, In : Translational Cancer Research. 5, p. S1457-S1460

Research output: Contribution to journalComment/debate

Neoplastic Stem Cells
beta Catenin
Liver Neoplasms
2014

Erratum: Correctors of dF508 CFTR restore global conformational maturation without thermally stabilizing the mutant protein (FASEB Journal (2013) 27 (536 -545) DOI:10.1096/fj.12-216119)

He, L., Kota, P., Aleksandrov, A. A., Cui, L., Jensen, T., Dokholyan, N. & Riordan, J. R., Jan 1 2014, In : FASEB Journal. 28, 6, 1 p.

Research output: Contribution to journalComment/debate

Mutant Proteins

Erratum: Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes (PLoS ONE (2014) 9:1 DOI: 10.1371/annotation/e9ad5950-a048-4a44-8e26-d8b07a9d4bb8)

Walter, V., Yin, X., Wilkerson, M. D., Cabanski, C. R., Zhao, N., Du, Y., Ang, M. K., Hayward, M. C., Salazar, A. H., Hoadley, K. A., Fritchie, K., Sailey, C. G., Weissler, M. C., Shockley, W. W., Zanation, A. M., Hackman, T., Thorne, L. B., Funkhouser, W. D., Muldrew, K. L., Olshan, A. F. & 4 others, Randell, S. H., Wright, F. A., Shores, C. G. & Hayes, D. N., Jan 16 2014, In : PloS one. 9, 1, 1315.

Research output: Contribution to journalComment/debate

Neoplasm Genes
Head and Neck Neoplasms
neoplasms
genes
head and neck neoplasms
2013
1 Citation (Scopus)

Adult hippocampal neurogenesis in the absence of serotonin (Commentary on Diaz et al.)

Luscher, B. & Fuchs, T., Sep 1 2013, In : European Journal of Neuroscience. 38, 5, 1 p.

Research output: Contribution to journalComment/debate

Neurogenesis
Serotonin

A looming danger: Pheochromocytoma

Li, Y., Spiler, I. J., Fahey, T., Akbar, G., Pattan, V., Jessani, N., Hossain, M. & Yousif, A., Jan 1 2013, In : American Journal of Medicine. 126, 12, p. 1054-1056 3 p.

Research output: Contribution to journalComment/debate

Adrenal Gland Neoplasms
Pheochromocytoma

Author reply.

Ishmael, F. & Prematta, T., Mar 2013, In : Allergy and Asthma Proceedings. 34, 2, p. 194 1 p.

Research output: Contribution to journalComment/debate

Drug Hypersensitivity
beta-Lactams
Medical Education
Penicillins
Anti-Bacterial Agents

Correction: Thermal unfolding pathway of PHD2 catalytic domain in three different PHD2 species: Computational approaches (PLoS ONE)

Hadi-Alijanvand, H., Proctor, E. A., Goliaei, B., Dokholyan, N. & Moosavi-Movahedi, A. A., Apr 22 2013, In : PloS one. 8, 4

Research output: Contribution to journalComment/debate

Hot Temperature
Receptor-Interacting Protein Serine-Threonine Kinases
Cyclic AMP-Dependent Protein Kinases
Phosphorylation
Research
corrigendum
3 Citations (Scopus)

Erratum: Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes (PLoS ONE (2013) 8:7 DOI:10.1371/annotation/b42f61c5-cb7e-49ca-8cd6-6e1f7903ad08)

Walter, V., Yin, X., Wilkerson, M. D., Cabanski, C. R., Zhao, N., Du, Y., Ang, M. K., Hayward, M. C., Salazar, A. H., Hoadley, K. A., Fritchie, K., Sailey, C. J., Weissler, M. C., Shockley, W. W., Zanation, A. M., Hackman, T., Thorne, L. B., Funkhouser, W. D., Muldrew, K. L., Olshan, A. F. & 4 others, Randell, S. H., Wright, F. A., Shores, C. G. & Hayes, D. N., Jul 16 2013, In : PloS one. 8, 7, A2275.

Research output: Contribution to journalComment/debate

Neoplasm Genes
Head and Neck Neoplasms
neoplasms
genes
head and neck neoplasms

In Vitro Epsilon RNA-Dependent Protein Priming Activity of Human Hepatitis B Virus Polymerase

Jones, S. A., Boregowda, R., Spratt, T. & Hu, J., Oct 29 2013, In : Journal of virology. 87, 22, 1 p.

Research output: Contribution to journalComment/debate

Hepatitis B virus
Human Activities
RNA
Proteins
In Vitro Techniques
2012
1 Citation (Scopus)

Erratum: ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions (Biochimica et Biophysica Acta (2011) 1808 (2954-2964))

Gyimesi, G., Ramachandran, S., Kota, P., Dokholyan, N., Sarkadi, B. & Hegedus, T., May 1 2012, In : Biochimica et Biophysica Acta - Biomembranes. 1818, 5, 1 p.

Research output: Contribution to journalComment/debate

ATP-Binding Cassette Transporters
Hydrolysis
Adenosine Triphosphate
7 Citations (Scopus)

Membrane proteins, magic-angle spinning, and in-cell NMR

Pielak, G. J. & Tian, F., Mar 27 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 13, p. 4715-4716 2 p.

Research output: Contribution to journalComment/debate

Membrane Proteins
Magnetic Resonance Spectroscopy
Escherichia coli
2010
1 Citation (Scopus)
Biochemistry
Viruses
Hepacivirus
RNA
2009

Glucose regulates transcription in yeast through a network of signaling pathways (Molecular Systems Biology (2009) 5, 245, DOI: 10.1038/msb.2009.2)

Zaman, S., Lippman, S. I., Schneper, L., Slonim, N. & Broach, J., Jan 20 2009, In : Molecular Systems Biology. 5, 257.

Research output: Contribution to journalComment/debate

Systems Biology
Signaling Pathways
Molecular Biology
Transcription
Glucose
2008
4 Citations (Scopus)

Views on four key questions about zebrafish research

Cheng, K., Aleström, P., Begemann, G., Carvan, M. J., Crosier, K., Crosier, P., Ekker, S., Huttenlocher, A., Kawakami, K., Kelly, G., Korzh, V., Lieschke, G., Mione, M., Neely, M. N., Neuhauss, S. & Trede, N. S., Mar 1 2008, In : Zebrafish. 5, 1, p. 9-24 16 p.

Research output: Contribution to journalComment/debate

biomedical research
Zebrafish
Danio rerio
Biomedical Research
Animal Models
2007
1 Citation (Scopus)

Erratum: Cross-talk and decision making in MAP kinase pathways (Nature Genetics (2007) 39, (409-414))

McClean, M. N., Mody, A., Broach, J. & Ramanathan, S., Apr 1 2007, In : Nature Genetics. 39, 4, 1 p.

Research output: Contribution to journalComment/debate

Decision Making
Phosphotransferases
2006
7 Citations (Scopus)
Computational Biology
bioinformatics
Fold
fold
Proteins
2005
2 Citations (Scopus)
Bacteriophage T4

Erratum: Shark cartilage, cancer and the growing threat of pseudoscience (Cancer Research (December 1, 2004) 64 (8485-8491))

Ostrander, G. K., Cheng, K., Wolf, J. C. & Wolfe, M. J., Jan 1 2005, In : Cancer Research. 65, 1, 1 p.

Research output: Contribution to journalComment/debate

Sharks
Cartilage
Research
Neoplasms
3 Citations (Scopus)
Protozoa
Glycosylphosphatidylinositols
2004
5 Citations (Scopus)

Erratum: LUCA-15 suppresses CD95-mediated apoptosis in Jurkat T cells (Oncogene (2001) 20 (2713-2719))

Sutherland, L. C., Lerman, M., Williams, G. T. & Miller, B., Jan 15 2004, In : Oncogene. 23, 2, 1 p.

Research output: Contribution to journalComment/debate

Jurkat Cells
Oncogenes
Apoptosis
T-Lymphocytes
2003
71 Citations (Scopus)
Glycosphingolipids
Pathogens
Carbohydrates
Ligands
Lectins
2001
9 Citations (Scopus)

Making sense (and antisense) of the X inactivation center

Willard, H. F. & Carrel, L., Aug 28 2001, In : Proceedings of the National Academy of Sciences of the United States of America. 98, 18, p. 10025-10027 3 p.

Research output: Contribution to journalComment/debate

Antisense DNA
X Chromosome Inactivation
Untranslated RNA
Genetic Models
Knockout Mice
2000
7 Citations (Scopus)
Carcinogenesis
4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone
corrigendum
4-(methylnitrosamino)-1-(3-pyridyl)-1-butan-1-ol
14 Citations (Scopus)
Transforming Growth Factors
Transforming Growth Factor beta
Chemical activation
1999

Erratum: The purine-2-amino group as the critical recognition element for sequence-specific alkylation and cross-linking of DNA by mitomycin C (Journal of the American Chemical Society (1998) 120 (11581-11593))

Tomasz, M., Das, A., Tang, K. S., Ford, M. G. J., Minnock, A., Musser, S. M. & Waring, M. J., Feb 10 1999, In : Journal of the American Chemical Society. 121, 5, 1 p.

Research output: Contribution to journalComment/debate

Alkylation
Mitomycin
DNA
purine
1995

Erratum: (Cancer Research (October 15, 1995) (4516-4519))

Sinha, R., 1995, In : Cancer Research. 55, 22, p. 5485 1 p.

Research output: Contribution to journalComment/debate

Research
Neoplasms
1993
1 Citation (Scopus)

Correction to abstract 8.09 from the twenty-first annual meeting of the society for complex carbohydrates

Gowda, D. C., Petrella, E. C., Bredehorst, R. & Vogel, C. W., Jun 1 1993, In : Glycobiology. 3, 3, 1 p.

Research output: Contribution to journalComment/debate

1991

Effect of protamine sulfate on the aca heparin assay

Castellani, W., Hodges, E. D. & Bode, A. P., Sep 12 1991, In : Clinical Chemistry. 37, 6, p. 1119-1120 2 p.

Research output: Contribution to journalComment/debate

Autoanalysis
Drug interactions
Protamines
Chromatography
Drug Interactions
1989
7 Citations (Scopus)

Relation of the amyloid β protein precursor to heparan sulfate proteoglycans

Gowda, C., Margolis, R. K., Frangione, B., Ghiso, J., Larrondo-Lillo, M., Margolis, R. U. & Schubert, D., Jan 1 1989, In : Science. 244, 4906, p. 826-828 3 p.

Research output: Contribution to journalComment/debate

Adrenal Gland Neoplasms
Cultured Tumor Cells
Heparan Sulfate Proteoglycans
Protein Precursors
Amyloid beta-Protein Precursor