Department of Biochemistry and Molecular Biology

  • United States

Research Output 1969 2019

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Letter
2019
26 Citations (Scopus)

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

23andMe Research Team, HUNT All-In Psychiatry, Liu, M., Jiang, Y., Wedow, R., Li, Y., Brazel, D. M., Chen, F., Datta, G., Davila-Velderrain, J., McGuire, D., Tian, C., Zhan, X., Agee, M., Alipanahi, B., Auton, A., Bell, R. K., Bryc, K., Elson, S. L., Fontanillas, P. & 32 others, Furlotte, N. A., Hinds, D. A., Hromatka, B. S., Huber, K. E., Kleinman, A., Litterman, N. K., McIntyre, M. H., Mountain, J. L., Northover, C. A. M., Sathirapongsasuti, J. F., Sazonova, O. V., Shelton, J. F., Shringarpure, S., Tian, C., Tung, J. Y., Vacic, V., Wilson, C. H., Pitts, S. J., Mitchell, A., Skogholt, A. H., Winsvold, B. S., Sivertsen, B., Stordal, E., Morken, G., Kallestad, H., Heuch, I., Zwart, J. A., Fjukstad, K. K., Pedersen, L. M., Gabrielsen, M. E., Johnsen, M. B. & Liu, D., Feb 1 2019, In : Nature Genetics. 51, 2, p. 237-244 8 p.

Research output: Contribution to journalLetter

Tobacco Use
Alcohols
Tobacco Use Cessation
Genetic Association Studies
Synaptic Transmission
2017
9 Citations (Scopus)

Germline IKAROS mutation associated with primary immunodeficiency that progressed to T-cell acute lymphoblastic leukemia

Yoshida, N., Sakaguchi, H., Muramatsu, H., Okuno, Y., Song, C., Dovat, S., Shimada, A., Ozeki, M., Ohnishi, H., Teramoto, T., Fukao, T., Kondo, N., Takahashi, Y., Matsumoto, K., Kato, K. & Kojima, S., May 1 2017, In : Leukemia. 31, 5, p. 1221-1223 3 p.

Research output: Contribution to journalLetter

Precursor T-Cell Lymphoblastic Leukemia-Lymphoma
Germ-Line Mutation
2016

Covariance estimators for Generalized Estimating Equations (GEE) in longitudinal analysis with small samples

Wang, M., Kong, L., Li, Z. & Zhang, L., Dec 10 2016, In : Statistics in Medicine. 35, 28, p. 5318-5319 2 p.

Research output: Contribution to journalLetter

Longitudinal Analysis
Generalized Estimating Equations
Small Sample
Estimator
14 Citations (Scopus)

Epigenetic regulation of gene expression by Ikaros, HDAC1 and Casein Kinase II in leukemia

Song, C., Pan, X., Ge, Z., Gowda, C., Ding, Y., Li, H., Li, Z., Yochum, G., Muschen, M., Li, Q., Payne, K. J. & Dovat, S., Jun 1 2016, In : Leukemia. 30, 6, p. 1436-1440 5 p.

Research output: Contribution to journalLetter

1 Citation (Scopus)
X Chromosome Inactivation
Factor VIII
Hemophilia A
14 Citations (Scopus)

Protein Destabilization as a Common Factor in Diverse Inherited Disorders

Redler, R. L., Das, J., Diaz, J. R. & Dokholyan, N., Jan 1 2016, In : Journal Of Molecular Evolution. 82, 1, p. 11-16 6 p.

Research output: Contribution to journalLetter

genetic disorders
protein
Amino Acid Substitution
Proteins
amino acid substitution
2014
2 Citations (Scopus)

Severe nondominant hereditary spherocytosis due to uniparental isodisomy at the SPTA1 locus

Bogardus, H., Schulz, V. P., Maksimova, Y., Miller, B., Li, P., Forget, B. G. & Gallagher, P. G., Sep 1 2014, In : Haematologica. 99, 9

Research output: Contribution to journalLetter

Severity of Illness Index
Uniparental Disomy
Hereditary Spherocytosis
Ankyrins
Spectrin
2013

Soundalike test names create confusion

Olson, J. & Castellani, W., Jan 1 2013, In : Archives of Pathology and Laboratory Medicine. 137, 3, 1 p.

Research output: Contribution to journalLetter

Clinical Laboratory Techniques
Names
Pharmaceutical Preparations
2012
259 Citations (Scopus)

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R. C., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E. & 66 others, Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller Capone, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D. J., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F. & Adams, L. B., Aug 13 2012, In : Genome biology. 13, 8, 418.

Research output: Contribution to journalLetter

Encyclopedias
DNA
mice
Genomics
genomics
2011
2 Citations (Scopus)

Gamma-aminobutyric acidergic deficits cause melancholic depression: A reply to markou and geyer

Luscher, B. & Shen, Q., Feb 15 2011, In : Biological Psychiatry. 69, 4

Research output: Contribution to journalLetter

GABA-A Receptors
Depressive Disorder
1 Citation (Scopus)

Interdisciplinary graduate education: A case study

Bronson, S. K., Verderame, M. F. & Keil, R. L., Dec 9 2011, In : Cell. 147, 6, p. 1207-1208 2 p.

Research output: Contribution to journalLetter

Education
2008

Authors' reply

Madhunapantula, S. R. V., Achur, R. N. & Gowda, C., Jun 1 2008, In : Infection and Immunity. 76, 6, p. 2808-2809 2 p.

Research output: Contribution to journalLetter

2007
240 Citations (Scopus)

Eris: An automated estimator of protein stability [2]

Yin, S., Ding, F. & Dokholyan, N., Jun 1 2007, In : Nature Methods. 4, 6, p. 466-467 2 p.

Research output: Contribution to journalLetter

Mutagenesis
Automation
Thermodynamics
Proteins
2006
4 Citations (Scopus)

New insights for glutaric aciduria type I [2]

Zinnanti, W. J., Lazovic, J., Wolpert, E. B., Antonetti, D. A., Smith, M. B., Connor, J., Woontner, M., Goodman, S. I. & Cheng, K., Aug 1 2006, In : Brain. 129, 8

Research output: Contribution to journalLetter

Inborn Metabolic Brain Diseases
Inborn Errors Amino Acid Metabolism
Multiple Acyl Coenzyme A Dehydrogenase Deficiency
Glutarates
Animal Disease Models
32 Citations (Scopus)

The path of DNA in the kinetochore

Bloom, K., Sharma, S. & Dokholyan, N., Apr 18 2006, In : Current Biology. 16, 8

Research output: Contribution to journalLetter

Fungal DNA
Non Histone Chromosomal Proteins
Kinetochores
kinetochores
Cell Cycle Proteins
2004

Calibration verification and CAP.

Castellani, W. J. & Sarewitz, S. J., 2004, In : Medical Laboratory Observer. 36, 5, p. 6-7 2 p.

Research output: Contribution to journalLetter

Facility Regulation and Control
Diagnostic Equipment
Centers for Medicare and Medicaid Services (U.S.)
Accreditation
Quality Control
3 Citations (Scopus)

Zebrafish, killifish, neither fish, both fish? [1]

Gerhard, G. S., Malek, R. L., Keller, E., Murtha, J. & Cheng, K., Sep 1 2004, In : Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 59, 9, p. 873-875 3 p.

Research output: Contribution to journalLetter

Fundulidae
Biological Models
Zebrafish
Fishes
Research
2002
8 Citations (Scopus)

1H, 15N and 13C assignments of full length human ADP ribosylation factor 1 (ARF1) using triple resonance connectivities and dipolar couplings [6]

Amor, J. C., Seidel, R. D., Tian, F., Kahn, R. A. & Prestegard, J. H., Sep 17 2002, In : Journal of Biomolecular NMR. 23, 3, p. 253-254 2 p.

Research output: Contribution to journalLetter

ADP-Ribosylation Factor 1
Nitrogen Isotopes
Carbon Isotopes
Protons
2001
65 Citations (Scopus)

The repertoire of Na, K-ATPase α and β subunit genes expressed in the Zebrafish, Danio rerio

Rajarao, S. J. R., Canfield, V., Mohideen, M. A. P. K., Yan, Y. L., Postlethwait, J. H., Cheng, K. & Levenson, R., Aug 6 2001, In : Genome Research. 11, 7, p. 1211-1220 10 p.

Research output: Contribution to journalLetter

Zebrafish
Genes
Isoenzymes
Protein Isoforms
sodium-translocating ATPase
2000
62 Citations (Scopus)
Cross-Linking Reagents
Bacteriophage T4
Holoenzymes
Bacteriophages
DNA-Directed DNA Polymerase
1999
52 Citations (Scopus)

Intensity-based measurement of homonuclear residual dipolar couplings from CT-COSY [9]

Tian, F., Bolon, P. J. & Prestegard, J. H., Aug 25 1999, In : Journal of the American Chemical Society. 121, 33, p. 7712-7713 2 p.

Research output: Contribution to journalLetter

1996
12 Citations (Scopus)

Burst-forming units-erythroid from erythropoietic protoporphyria patients fluoresce under 405 nm light [2]

Mathews-Roth, M. M., Wise, R. J. & Miller, B., May 29 1996, In : Blood. 87, 10, p. 4480-4481 2 p.

Research output: Contribution to journalLetter

Hepatoerythropoietic Porphyria
Hematopoietic Cell Growth Factors
Erythropoietic Protoporphyria
Erythroid Precursor Cells
Protoporphyrins
1995
18 Citations (Scopus)

Unexpected mutagen in fish

Chen, W., Weisburger, J. H., Fiala, E. S., Carmella, S. G., Chen, D., Spratt, T. & Hecht, S. S., Apr 13 1995, In : Nature. 374, 6523, 1 p.

Research output: Contribution to journalLetter

Mutagenicity Tests
Butyrates
Mutagens
Salmonella typhimurium
Japan
1992
1 Citation (Scopus)

Mercurochrome interference with the Abbott TDx.

Castellani, W. J., Jun 1992, In : Clinical Chemistry. 38, 6, p. 1190-1191 2 p.

Research output: Contribution to journalLetter

Merbromin
Diagnostic Reagent Kits
Fluorescence Polarization Immunoassay
Quality Control
Quality control
1984
32 Citations (Scopus)

Recombinational hotspot activity of chi-like sequences

Cheng, K. & Smith, G. R., Dec 5 1984, In : Journal of Molecular Biology. 180, 2, p. 371-377 7 p.

Research output: Contribution to journalLetter

Genetic Recombination
Coliphages
Bacteriophages
Nucleotides
Escherichia coli