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Projects 1980 2023

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Y Chromosome Evolution

Makova, K. D.

National Institutes of Health

2/1/191/31/23

Project: Research project

Y Chromosome
Hominidae
Genes
Gorilla gorilla
Genetic Drift

Implementing the Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Nekrutenko, A., Taylor, J. P., Leek, J. T., Waldron, L. D., Carey, V. J., Morgan, M., Schatz, M. & Goecks, J.

National Institutes of Health

9/21/186/30/23

Project: Research project

Visualization
Application programming interfaces (API)
Space platforms
Costs
Natural sciences computing
Histone Code
Chromatin
Nucleosomes
Enzymes
Cryoelectron Microscopy
Cyclic Nucleotides
RNA Stability
Phenotype
Bacteria
Biofilms
quorum sensing
Vibrio fischeri
infection
bioluminescence
squid
Education
Genes
Molecular Biology
Genomics
Computational Biology
Infant, Newborn, Diseases
Infection
Human Herpesvirus 2
Human Herpesvirus 1
Genomics
RNA Folding
Biophysics
Genomics
Catalysis
Catalytic RNA
Iron
Enzymes
Biosynthesis
S-Adenosylmethionine
Glutarates
G-proteins
phosphorylation
protein subunits
phosphotransferases (kinases)
receptors
Human Herpesvirus 1
Genetic Testing
Virulence
Viral Proteins
Virus Diseases
Histones
DNA
Chromatin Assembly and Disassembly
Nucleosomes
Gene Components
Regulator Genes
Genome
Proteins
Multiprotein Complexes
Distillation
Scaffolds
RNA
Proteins
Imaging techniques
Molecules
acquired immune deficiency syndrome
human immunodeficiency virus
prediction
occupation
population size
Aryl Hydrocarbon Receptors
Microbiota
Ligands
3,4,5,3',4'-pentachlorobiphenyl
Ceramides
Ribosomes
Bacteria
Bacterial Physiological Phenomena
Francisella tularensis
Anti-Bacterial Agents

Tuning big data analysis infrastructure for HIV research

Nekrutenko, A., Taylor, J. P. & Pond, S. L. K.

National Institutes of Health

6/26/175/31/22

Project: Research project

Tuning
Genes
Big data
Costs
Iron-Sulfur Proteins
S-Adenosylmethionine
Biosynthesis
Sulfur
Enzymes
Nucleosomes
Transcription Factors
Regulator Genes
Chromosomes
Binding Sites
Plasmodium
Parasites
Sporozoites
Messenger RNA
Proteins
Scaffolds
Enzymes
Reengineering
Free Radicals
Transition metals

VISION: ValIdated Systematic IntegratiON of epigenomic data

Hardison, R. C., Zhang, Y., Bodine, D. M., Taylor, J. P., Blobel, G. & Weiss, M.

National Institutes of Health

7/18/165/31/21

Project: Research project

Epigenomics
Research Personnel
Regulator Genes
Hematopoietic Stem Cells
Genes
Yeasts
Gene Expression
Saccharomycetales
Genes
Libraries
Oxygenases
Iron
Carbon
Glutarates
Halogenation
Health
Bioinformatics
Statistics
Information science
Big data

Genomic Architecture of LGL Leukemia

Hardison, R. C. & Loughran, T. P.

National Institutes of Health

12/1/1511/30/20

Project: Research project

Large Granular Lymphocytic Leukemia
Genome
Phenotype
Mutation
Genomic Structural Variation

Pharmacogenomics of Statin Therapy

Ritchie, M. D., Medina, M. W., Iribarren, C., Reue, K., Risch, N. J., Lusis, A. J., Medina, M. W. & Krauss, R.

National Institutes of Health

9/7/158/31/20

Project: Research project

Metabolites
Genes
Data visualization
Bioinformatics
Medicine
drug abuse
Substance-Related Disorders
Behavioral Sciences
HIV
mentoring
Computational Biology
Aptitude
Education
Genomics
Research
Major Depressive Disorder
Interneurons
Depression
Brain
Antidepressive Agents
DNA-Directed RNA Polymerases
Escherichia coli
Operon
RNA
5' Untranslated Regions
Galaxies
Throughput
Cloud computing
Computational methods
Statistical methods
DNA-Directed RNA Polymerases
Nucleic Acids
X-Rays
Archaeal RNA
Polytetrafluoroethylene

Pharmacogenomics of HIV Therapy

Ritchie, M. D. & Haas, D.

National Institutes of Health

12/1/0712/31/19

Project: Research project

Pharmacogenetics
HIV
Genetic Polymorphisms
Acquired Immunodeficiency Syndrome
Phenotype
Nucleosomes
Yeasts
Genome
Chromatin
Regulator Genes
promoter regions
genome
transcription (genetics)
Genome
heat stress
Ribonuclease P
RNA
Transfer RNA
GABA-A Receptors
Cluster Analysis
Synapses
Neural Inhibition
Maintenance

REGULATION OF TBP DIMERS

Pugh, F.

National Institutes of Health

2/1/004/30/21

Project: Research project

TATA-Box Binding Protein
Genome
Transcription Factor TFIID
Genes
Gene Expression
Carbon
Bacterial Physiological Phenomena
RNA
Virulence Factors
Escherichia coli
DNA Damage
Yeasts
Peptide Elongation Factors
Genes
RNA Polymerase II
lysine 2,3-aminomutase
S-Adenosylmethionine
Chemical activation
Lysine
Clostridium
Shock
Hot Temperature
Drosophila
Genes
heat stress