• United States

Research Output 1949 2020

2019
1 Citation (Scopus)

Design of highly active double-pseudoknotted ribozymes: A combined computational and experimental study

Yamagami, R., Kayedkhordeh, M., Mathews, D. H. & Bevilacqua, P. C., Jan 10 2019, In : Nucleic acids research. 47, 1, p. 29-42 14 p.

Research output: Contribution to journalArticle

Catalytic RNA
RNA Folding
Riboswitch
RNA
Synthetic Biology

Detecting Comma-Shaped Clouds for Severe Weather Forecasting Using Shape and Motion

Zheng, X., Ye, J., Chen, Y., Wistar, S., Li, J., Piedra Fernández, J. A., Steinberg, M. A. & Wang, J. Z., Jun 2019, In : IEEE Transactions on Geoscience and Remote Sensing. 57, 6, p. 3788-3801 14 p., 8606456.

Research output: Contribution to journalArticle

Weather forecasting
severe weather
weather forecasting
Satellites
sliding

Detecting trace of mercury ions in water using photoacoustic method enhanced by gold nanospheres

He, Q., Zhang, Q., Cao, W., Yin, T., Zhao, S., Yin, X., Zhao, H. & Tao, W., Nov 2019, In : Microchemical Journal. 150, 104058.

Research output: Contribution to journalArticle

Photoacoustic effect
Nanospheres
Mercury
Gold
Ions

Detection of Shared Balancing Selection in the Absence of Trans-Species Polymorphism

Cheng, X. & Degiorgio, M., Jan 1 2019, In : Molecular biology and evolution. 36, 1, p. 177-199 23 p.

Research output: Contribution to journalArticle

Pan troglodytes
polymorphism
genetic polymorphism
Genome
Intergenic DNA

Detection of the Temporal Variation of the Sun's Cosmic Ray Shadow with the IceCube Detector

IceCube Collaboration, Jan 1 2019, In : Astrophysical Journal. 872, 2, 133.

Research output: Contribution to journalArticle

cosmic ray
cosmic rays
sun
temporal variation
moon
1 Citation (Scopus)

Detection prospects of core-collapse supernovae with supernova-optimized third-generation gravitational-wave detectors

Srivastava, V., Ballmer, S., Brown, D. A., Afle, C., Burrows, A., Radice, D. & Vartanyan, D., Aug 23 2019, In : Physical Review D. 100, 4, 043026.

Research output: Contribution to journalArticle

gravitational waves
supernovae
detectors
waveforms
frequency ranges

Developing Interactive Educational Songs for Introductory Statistics

Lesser, L. M., Pearl, D. K., Weber, J. J., Dousa, D. M., Carey, R. P. & Haddad, S. A., Jan 1 2019, (Accepted/In press) In : Journal of Statistics Education.

Research output: Contribution to journalArticle

Open Access
song
Anxiety
statistics
Statistics
Expertise
Stroke
Acute
Computational Model
Cohesive Zone
Cohesive Zone Model

Diameter-optimized high-order waveguide nanorods for fluorescence enhancement applied in ultrasensitive bioassays

Du, B., Tang, C., Zhao, D., Zhang, H., Yu, D., Yu, M., Balram, K. C., Gersen, H., Yang, B., Cao, W., Gu, C., Besenbacher, F., Li, J. & Sun, Y., Aug 14 2019, In : Nanoscale. 11, 30, p. 14322-14329 8 p.

Research output: Contribution to journalArticle

Bioassay
Nanorods
Waveguides
Fluorescence
Biochips

Dielectric loss and thermal effect in high power piezoelectric systems

Yang, T., Zhu, Y., Li, S., An, D., Yang, M. & Cao, W., Jan 1 2019, (Accepted/In press) In : Sensors and Actuators, A: Physical. 303, 111724.

Research output: Contribution to journalArticle

Dielectric losses
dielectric loss
Thermal effects
temperature effects
Transducers

Dielectric relaxation and local domain structures of ferroelectric PIMNT and PMNT single crystals

Li, K., Sun, E., Qi, X., Yang, B., Liu, J. & Cao, W., Jan 1 2019, (Accepted/In press) In : Journal of the American Ceramic Society. 103, 3, p. 1744-1754 11 p.

Research output: Contribution to journalArticle

Dielectric relaxation
Ferroelectric materials
Permittivity
Single crystals
Electric potential

Dielectric relaxation properties of [001] c -, [011] c -, and [111] c -oriented 0.24PIN-0.47PMN-0.29PT single crystals

Qi, X., Sun, E., Li, K., Li, S., Zhang, R., Yang, B. & Cao, W., Jul 2019, In : Journal of the American Ceramic Society. 102, 7, p. 4103-4112 10 p.

Research output: Contribution to journalArticle

Dielectric relaxation
Single crystals
Freezing
Permittivity
Temperature
4 Citations (Scopus)
Charge density waves
Superconductivity
Intercalation
Crystals
Ions
1 Citation (Scopus)

Dimension Estimates for Non-conformal Repellers and Continuity of Sub-additive Topological Pressure

Cao, Y., Pesin, Y. & Zhao, Y., Oct 1 2019, In : Geometric and Functional Analysis. 29, 5, p. 1325-1368 44 p.

Research output: Contribution to journalArticle

Topological Pressure
Hausdorff Dimension
Estimate
Metric Entropy
Equilibrium Measure
1 Citation (Scopus)
Plant Cells
Cellulose
Cell Wall
Embryophyta
Bacterial Structures
3 Citations (Scopus)

Directional limits on persistent gravitational waves using data from Advanced LIGO's first two observing runs

(The LIGO Scientific Collaboration and the Virgo Collaboration), Sep 4 2019, In : Physical Review D. 100, 6, 062001.

Research output: Contribution to journalArticle

LIGO (observatory)
gravitational waves
point sources
flux density
broadband
1 Citation (Scopus)

Directions for research and training in plant omics: Big Questions and Big Data

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Friesner, J., Greenlee, V. R., Law, J. A., Marshall-Colón, A., Mason, G. A., O'Lexy, R., Peck, S. C., Schmitz, R. J., Song, L., Stern, D., Varagona, M. J., Walley, J. W. & Williams, C. M., Apr 2019, In : Plant Direct. 3, 4, e00133.

Research output: Contribution to journalArticle

Open Access
training (plants)
Education
plant biology
Research
Arabidopsis
1 Citation (Scopus)

Direct Measurement of Quasar Outflow Wind Acceleration

Misawa, T., Eracleous, M., Charlton, J. C. & Kashikawa, N., Jan 10 2019, In : Astrophysical Journal. 870, 2, 68.

Research output: Contribution to journalArticle

quasars
outflow
shift
deceleration
profiles

Direct observation of proximity-induced magnetism and spin reorientation in topological insulator on a ferrimagnetic oxide

Yang, C. Y., Lee, Y. H., Ou Yang, K. H., Chiu, K. C., Tang, C., Liu, Y., Zhao, Y. F., Chang, C. Z., Chang, F. H., Lin, H. J., Shi, J. & Lin, M. T., Feb 25 2019, In : Applied Physics Letters. 114, 8, 082403.

Research output: Contribution to journalArticle

retraining
proximity
insulators
oxides
Hall effect

Direct prediction of regulatory elements from partial data without imputation

Zhang, Y. & Mahony, S., Jan 1 2019, In : PLoS computational biology. 15, 11, e1007399.

Research output: Contribution to journalArticle

Open Access
Imputation
segmentation
Genome
Segmentation
genome
2 Citations (Scopus)

Direct Single Molecule Imaging of Enhanced Enzyme Diffusion

Xu, M., Ross, J. L., Valdez, L. & Sen, A., Sep 17 2019, In : Physical Review Letters. 123, 12, 128101.

Research output: Contribution to journalArticle

enzymes
molecules
fluorescence
diffusion coefficient
spectroscopy

DiscoverY: A classifier for identifying y chromosome sequences in male assemblies

Rangavittal, S., Stopa, N., Tomaszkiewicz, M., Sahlin, K., Makova, K. D. & Medvedev, P., Aug 9 2019, In : BMC genomics. 20, 1, 641.

Research output: Contribution to journalArticle

Open Access
Chromosomes
Genome
Gorilla gorilla
Y Chromosome
Haploidy

Discovery and Identification of MAXI J1621-501 as a Type i X-Ray Burster with a Super-orbital Period

Gorgone, N. M., Kouveliotou, C., Negoro, H., Wijers, R. A. M. J., Bozzo, E., Guiriec, S., Bult, P., Huppenkothen, D., Göǧüş, E., Bahramian, A., Kennea, J., Linford, J. D., Miller-Jones, J., Baring, M. G., Beniamini, P., Chakrabarty, D., Granot, J., Hailey, C., Harrison, F. A., Hartmann, D. H. & 9 others, Iwakiri, W., Kaper, L., Kara, E., Mazzola, S., Murata, K., Stern, D., Tomsick, J. A., Horst, A. J. V. D. & Younes, G. A., Oct 20 2019, In : Astrophysical Journal. 884, 2, 168.

Research output: Contribution to journalArticle

orbitals
bursts
x rays
precession
x ray binaries
1 Citation (Scopus)

Discovery of an Intermediate-luminosity Red Transient in M51 and Its Likely Dust-obscured, Infrared-variable Progenitor

Jencson, J. E., Adams, S. M., Bond, H. E., Van Dyk, S. D., Kasliwal, M. M., Bally, J., Blagorodnova, N., De, K., Fremling, C., Yao, Y., Fruchter, A., Rubin, D., Barbarino, C., Sollerman, J., Miller, A. A., Hicks, E. K. S., Malkan, M. A., Andreoni, I., Bellm, E. C., Buchheim, R. & 32 others, Dekany, R., Feeney, M., Frederick, S., Gal-Yam, A., Gehrz, R. D., Giomi, M., Graham, M. J., Green, W., Hale, D., Hankins, M. J., Hanson, M., Helou, G., Ho, A. Y. Q., Hung, T., Jurić, M., Kendurkar, M. R., Kulkarni, S. R., Lau, R. M., Masci, F. J., Neill, J. D., Quin, K., Riddle, R. L., Rusholme, B., Sims, F., Smith, N., Smith, R. M., Soumagnac, M. T., Tachibana, Y., Tinyanont, S., Walters, R., Watson, S. & Williams, R. E., Aug 1 2019, In : Astrophysical Journal Letters. 880, 2, L20.

Research output: Contribution to journalArticle

dust
luminosity
outburst
color
novae

Discovery of a Red Supergiant Donor Star in SN2010da/NGC 300 ULX-1

Heida, M., Lau, R. M., Davies, B., Brightman, M., Fürst, F., Grefenstette, B. W., Kennea, J. A., Tramper, F., Walton, D. J. & Harrison, F. A., Oct 1 2019, In : Astrophysical Journal Letters. 883, 2, L34.

Research output: Contribution to journalArticle

radial velocity
stars
orbitals
stellar atmospheres
accretion disks
6 Citations (Scopus)

Discovery of a Third Transiting Planet in the Kepler-47 Circumbinary System

Orosz, J. A., Welsh, W. F., Haghighipour, N., Quarles, B., Short, D. R., Mills, S. M., Satyal, S., Torres, G., Agol, E., Fabrycky, D. C., Jontof-Hutter, D., Windmiller, G., Müller, T. W. A., Hinse, T. C., Cochran, W. D., Endl, M., Ford, E. B., Mazeh, T. & Lissauer, J. J., May 2019, In : Astronomical Journal. 157, 5, 174.

Research output: Contribution to journalArticle

planets
planet
orbitals
radii
orbits

Discrete and continuous models of probability flux of switching dynamics: Uncovering stochastic oscillations in a toggle-switch system

Terebus, A., Liu, C. & Liang, J., Nov 14 2019, In : Journal of Chemical Physics. 151, 18, 185104.

Research output: Contribution to journalArticle

Open Access
switches
Switches
Fluxes
oscillations
differential equations
Open Access
methylation
DNA Methylation
discrimination
Methylation
deoxyribonucleic acid
1 Citation (Scopus)

Disentangling loosening from softening: insights into primary cell wall structure

Zhang, T., Tang, H., Vavylonis, D. & Cosgrove, D. J., Dec 1 2019, In : Plant Journal. 100, 6, p. 1101-1117 17 p.

Research output: Contribution to journalArticle

Cell Wall
compliance
cell walls
Compliance
Mechanics

Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

Chow, J., Jensen, M., Amini, H., Hormozdiari, F., Penn, O., Shifman, S., Girirajan, S. & Hormozdiari, F., Oct 25 2019, In : Genome Medicine. 11, 1, 65.

Research output: Contribution to journalArticle

Open Access
Epilepsy
Phenotype
Genes
Developmental Disabilities
Seeds
3 Citations (Scopus)

Dissociation rate compensation mechanism for budding yeast pioneer transcription factors

Donovan, B. T., Chen, H., Jipa, C., Bai, L. & Poirier, M. G., Mar 2019, In : eLife. 8, e43008.

Research output: Contribution to journalArticle

Open Access
Saccharomycetales
Nucleosomes
Yeast
Transcription Factors
Yeasts

Distinct activities of Gli1 and Gli2 in the absence of Ift88 and the primary cilia

Wang, Y., Zeng, H. & Liu, A., Jan 1 2019, In : Journal of Developmental Biology. 7, 1, 5.

Research output: Contribution to journalArticle

Open Access
Cilia
Embryonic Structures
Neural Tube
Motor Neurons
Interneurons
4 Citations (Scopus)

Distinct Signatures of Electron-Phonon Coupling Observed in the Lattice Thermal Conductivity of NbSe 3 Nanowires

Yang, L., Tao, Y., Liu, J., Liu, C., Zhang, Q., Akter, M., Zhao, Y., Xu, T. T., Xu, Y., Mao, Z., Chen, Y. & Li, D., 2019, In : Nano letters. 19, 1, p. 415-421 7 p.

Research output: Contribution to journalArticle

Phonon scattering
Nanowires
Electron scattering
Thermal conductivity
nanowires

Division by on odd-degree hyperelliptic curves and their Jacobians

Zarhin, Y. G., Jan 1 2019, In : Izvestiya Mathematics. 83, 3, p. 501-520 20 p.

Research output: Contribution to journalArticle

Torsion Points
Identity element
Multiple Roots
P-point
Order of a polynomial

Do Diradicals Behave like Radicals?

Stuyver, T., Chen, B., Zeng, T., Geerlings, P., De Proft, F. & Hoffmann, R., Nov 13 2019, In : Chemical Reviews. 119, 21, p. 11291-11351 61 p.

Research output: Contribution to journalReview article

Dimerization
Interchanges
Molecular orbitals
Ground state
Electronic structure
1 Citation (Scopus)

Does black hole growth depend fundamentally on host-galaxy compactness?

Ni, Q., Yang, G., Brandt, W. N., Alexander, D. M., Chen, C. T. J., Luo, B., Vito, F. & Xue, Y. Q., Jan 1 2019, In : Monthly Notices of the Royal Astronomical Society. 490, 1, p. 1135-1155 21 p.

Research output: Contribution to journalArticle

void ratio
galaxies
accretion
gas
coevolution
2 Citations (Scopus)

Domain topology, stability, and translation speed determine mechanical force generation on the ribosome

Leininger, S. E., Trovato, F., Nissley, D. A. & O’Brien, E. P., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 12, p. 5523-5532 10 p.

Research output: Contribution to journalArticle

Ribosomes
Proteins
Statistical Models
Proteome
Phenotype

Dominated and pointwise ergodic theorems with “weighted” averages for bounded Lamperti representations of amenable groups

Tempelman, A. & Shulman, A., Jun 1 2019, In : Journal of Mathematical Analysis and Applications. 474, 1, p. 23-58 36 p.

Research output: Contribution to journalArticle

Amenable Group
Ergodic Theorem
Weighted Average
Bounded Operator
Polynomials

Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes

Vegesna, R., Tomaszkiewicz, M., Medvedev, P. & Makova, K. D., Jan 1 2019, In : PLoS genetics. 15, 9, e1008369.

Research output: Contribution to journalArticle

Open Access
Chromosomes, Human, Y
Y-Linked Genes
Gene Dosage
Y chromosome
gene expression
3 Citations (Scopus)

Dose-response and transmission: The nexus between reservoir hosts, nvironment and recipient hosts

Lunn, T. J., Restif, O., Peel, A. J., Munster, V. J., De Wit, E., Sokolow, S., Van Doremalen, N., Hudson, P. & McCallum, H., Sep 30 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1782, 20190016.

Research output: Contribution to journalReview article

disease reservoirs
Zoonoses
Pathogens
dose response
Nipah Virus

Do topology and ferromagnetism cooperate at the EuS/Bi2Se3 interface?

Krieger, J. A., Ou, Y., Caputo, M., Chikina, A., Döbeli, M., Husanu, M. A., Keren, I., Prokscha, T., Suter, A., Chang, C. Z., Moodera, J. S., Strocov, V. N. & Salman, Z., Feb 19 2019, In : Physical Review B. 99, 6, 064423.

Research output: Contribution to journalArticle

Ferromagnetism
Titanium
ferromagnetism
topology
Topology
1 Citation (Scopus)

Doubly resonant sum frequency spectroscopy of mixed photochromic isomers on surfaces reveals conformation-specific vibronic effects

Raab, M., Becca, J. C., Heo, J., Lim, C. K., Baev, A., Jensen, L., Prasad, P. N. & Velarde, L., Mar 21 2019, In : Journal of Chemical Physics. 150, 11, 114704.

Research output: Contribution to journalArticle

Isomers
Conformations
Natural frequencies
isomers
Spectroscopy
1 Citation (Scopus)

Draft genome sequences of type VI secretion system-encoding vibrio fischeri strains FQ-A001 and ES401

Bultman, K. M., Cecere, A. G., Miyashiro, T., Septer, A. N. & Mandel, M. J., May 16 2019, In : Microbiology Resource Announcements. 8, 20, e00385-19.

Research output: Contribution to journalArticle

Open Access
Aliivibrio fischeri
Genome
Decapodiformes
Genomics
Bacteria
Drift-diffusion
Diffusion Process
Elimination
elimination
Active Particles
6 Citations (Scopus)

Dual approach for effective potentials that accurately model structure and energetics

Lebold, K. M. & Noid, W. G., Jun 21 2019, In : Journal of Chemical Physics. 150, 23, 234107.

Research output: Contribution to journalArticle

Open Access
Model structures
degrees of freedom
Degrees of freedom (mechanics)
Potential energy
Nuclear energy
Specific heat
Thermodynamics
Temperature
specific heat
thermodynamics
1 Citation (Scopus)
Protein Isoforms
Phosphotransferases
Growth
Neoplasms
Drosophila
2 Citations (Scopus)

Dust formation in embryonic pulsar-aided supernova remnants

Omand, C. M. B., Kashiyama, K. & Murase, K., Apr 21 2019, In : Monthly Notices of the Royal Astronomical Society. 484, 4, p. 5468-5483 16 p.

Research output: Contribution to journalArticle

supernova remnants
pulsars
dust
supernovae
nebulae

Dynamical Mordell-Lang and automorphisms of blow-ups

Lesieutre, J. & Litt, D., Jan 1 2019, In : Algebraic Geometry. 6, 1, p. 1-25 25 p.

Research output: Contribution to journalArticle

Automorphisms
Projective Variety
Automorphism
Endomorphism
Fibration
1 Citation (Scopus)

Dynamic and game theory of infectious disease stigmas

Reluga, T., Smith, R. A. & Hughes, D. P., Sep 7 2019, In : Journal of Theoretical Biology. 476, p. 95-107 13 p.

Research output: Contribution to journalArticle

Game Theory
Dynamics (theory)
Stereotyping
game theory
Game theory