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2020

Oligonucleotide Enrichment of HSV-1 Genomic DNA from Clinical Specimens for Use in High-Throughput Sequencing

Shipley, M. M., Rathbun, M. M. & Szpara, M. L., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 199-217 19 p. (Methods in Molecular Biology; vol. 2060).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Throughput Nucleotide Sequencing
Viral DNA
Human Herpesvirus 1
Simplexvirus
Oligonucleotides
2019
1 Citation (Scopus)

A refinement of the alladi–schur theorem

Andrews, G. E., Jan 1 2019, Developments in Mathematics. Springer New York LLC, p. 71-77 7 p. (Developments in Mathematics; vol. 58).

Research output: Chapter in Book/Report/Conference proceedingChapter

Refinement
Partition
Theorem
Count
Odd
1 Citation (Scopus)

Bimolecular Fluorescence Complementation (BiFC) in Tissue Culture and in Developing Tissues of Drosophila to Study Protein-Protein Interactions

Matsui, Y. & Lai, Z., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 75-85 11 p. (Methods in Molecular Biology; vol. 1893).

Research output: Chapter in Book/Report/Conference proceedingChapter

Drosophila
Fluorescence
Proteins
Artifacts
1 Citation (Scopus)

Biosynthesis of chlorophylls and bacteriochlorophylls in green bacteria

Thweatt, J. L., Canniffe, D. P. & Bryant, D. A., Jan 1 2019, Advances in Botanical Research. Grimm, B. (ed.). Academic Press Inc., p. 35-89 55 p. (Advances in Botanical Research; vol. 90).

Research output: Chapter in Book/Report/Conference proceedingChapter

biosynthesis
chlorophyll
bacteria
Acidobacteria
chlorins

Chapter 11: Collective Behaviour of Artificial Microswimmers in Response to Environmental Conditions

Altemose, A. & Sen, A., Jan 1 2019, Self-organized Motion: Physicochemical Design based on Nonlinear Dynamics. Lagzi, I., Pimienta, V., Suematsu, N. J., Nakata, S. & Kitahata, H. (eds.). 14 ed. Royal Society of Chemistry, p. 250-283 34 p. (RSC Theoretical and Computational Chemistry Series; vol. 2019-January, no. 14).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological systems
Fish

CryoEM reconstruction approaches to resolve asymmetric features

Goetschius, D. J., Lee, H. & Hafenstein, S., 2019, Advances in Virus Research. Rey, F. A. (ed.). Academic Press Inc., p. 73-91 19 p. (Advances in Virus Research; vol. 105).

Research output: Chapter in Book/Report/Conference proceedingChapter

Viruses
Capsid
Life Cycle Stages
Genome
Proteins

Cycles in the Supersingular ℓ-Isogeny Graph and Corresponding Endomorphisms

Bank, E., Camacho-Navarro, C., Eisentraeger, A. K., Morrison, T. & Park, J., Jan 1 2019, Association for Women in Mathematics Series. Springer, p. 41-66 26 p. (Association for Women in Mathematics Series; vol. 19).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isogeny
Endomorphisms
Cycle
Graph in graph theory
Endomorphism Ring

Human movements: Synergies, stability, and agility

Latash, M., Jan 1 2019, Springer Tracts in Advanced Robotics. Springer Verlag, p. 135-154 20 p. (Springer Tracts in Advanced Robotics; vol. 124).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurology
Analysis of variance (ANOVA)
Muscle

Information-Theoretic Inference of an Optimal Dictionary of Protein Supersecondary Structures

Konagurthu, A. S., Subramanian, R., Allison, L., Abramson, D., de la Banda, M. G., Stuckey, P. J. & Lesk, A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 123-131 9 p. (Methods in Molecular Biology; vol. 1958).

Research output: Chapter in Book/Report/Conference proceedingChapter

Amino Acid Motifs
Data Compression
Protein Folding
Patient Selection

In Vivo Genome-Wide RNA Structure Probing with Structure-seq

Ritchey, L. E., Su, Z., Assmann, S. M. & Bevilacqua, P. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 305-341 37 p. (Methods in Molecular Biology; vol. 1933).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome
RNA
Glyoxal
Transcriptome
Bacteria

Metabolon formation by chemotaxis

Zhao, X. & Sen, A., Jan 1 2019, Methods in Enzymology. Academic Press Inc., p. 45-62 18 p. (Methods in Enzymology; vol. 617).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemotaxis
Enzymes
Substrates
Glucose-6-Phosphate Isomerase
Phosphofructokinases

Modern phylogenomics: Building phylogenetic trees using the multispecies coalescent model

Liu, L., Anderson, C., Pearl, D. K. & Edwards, S. V., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 211-239 29 p. (Methods in Molecular Biology; vol. 1910).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
Genes
Gene Flow
Expressed Sequence Tags
Bayes Theorem
Datasets

Monitoring proteome stress in live cells using halotag-based fluorogenic sensor

Liu, Y., Fares, M. & Zhang, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 171-182 12 p. (Methods in Molecular Biology; vol. 1873).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteome
Fluorescence
Hot Temperature
Pharmaceutical Preparations
1 Citation (Scopus)

Multiparton pp and pA Collisions: From Geometry to Parton-Parton Correlations

Blok, B. & Strikman, M., Jan 1 2019, Advanced Series on Directions in High Energy Physics. World Scientific Publishing Co. Pte Ltd, p. 63-99 37 p. (Advanced Series on Directions in High Energy Physics; vol. 29).

Research output: Chapter in Book/Report/Conference proceedingChapter

partons
collisions
geometry
interactions
kinematics
1 Citation (Scopus)

The Alstoscholarisine Alkaloids: Isolation, Structure Determination, Biogenesis, Biological Evaluation, and Synthesis

Mason, J. D. & Weinreb, S. M., Jan 1 2019, Alkaloids: Chemistry and Biology. Knölker, H-J. (ed.). Academic Press Inc., p. 115-150 36 p. (Alkaloids: Chemistry and Biology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter

Alkaloids
Alstonia
Secologanin Tryptamine Alkaloids
Biosynthesis
Metabolites
2018

A review of exoplanets detection methods

Babu, G. J., Jan 1 2018, Springer Proceedings in Mathematics and Statistics. Springer New York LLC, Vol. 244. p. 79-87 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Exoplanets
Kepler
NASA
Review
8 Citations (Scopus)

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug and Play” Domain

Holliday, G. L., Akiva, E., Meng, E. C., Brown, S. D., Calhoun, S., Pieper, U., Sali, A., Booker, S. J. & Babbitt, P. C., Jan 1 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 1-71 71 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlases
Nucleic Acids
Databases
Enzymes
Metabolism
1 Citation (Scopus)

Biochemical Approaches for Understanding Iron–Sulfur Cluster Regeneration in Escherichia coli Lipoyl Synthase During Catalysis

McCarthy, E. L. & Booker, S. J., Jan 1 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 217-239 23 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalysis
Escherichia coli
Regeneration
S-Adenosylmethionine
Sulfur

Chemical Tools for Studying the Impact of cis/trans Prolyl Isomerization on Signaling: A Case Study on RNA Polymerase II Phosphatase Activity and Specificity

Burkholder, N. T., Medellin, B., Irani, S., Matthews, W., Showalter, S. A. & Zhang, Y. J., Jan 1 2018, Methods in Enzymology. Allen, K. N. (ed.). Academic Press Inc., p. 269-297 29 p. (Methods in Enzymology; vol. 607).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Polymerase II
Isomerization
Phosphoric Monoester Hydrolases
Proline
Conformations

Detecting purinosome metabolon formation with fluorescence microscopy

Pedley, A. M. & Benkovic, S., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 279-289 11 p. (Methods in Molecular Biology; vol. 1764).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence Microscopy
Enzymes
Multienzyme Complexes
Purines
Biosynthetic Pathways

Endomorphism algebras of abelian varieties with special reference to superelliptic Jacobians

Zarkhin, Y. G., Jan 1 2018, Springer Proceedings in Mathematics and Statistics. Springer New York LLC, p. 477-528 52 p. (Springer Proceedings in Mathematics and Statistics; vol. 251).

Research output: Chapter in Book/Report/Conference proceedingChapter

Abelian Variety
Endomorphism
Galois
Closure
Cover

Equations for viscoelastic fluids

Hu, X., Lin, F. H. & Liu, C., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 1045-1073 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Complex Fluids
Viscoelastic Fluid
Fluids
fluids
Variational Approach

New statistical methods inspired by data collected from alcohol and substance abuse research

Buu, A. & Li, R., Jan 18 2018, Alcohol Use Disorders: A Developmental Science Approach to Etiology. Oxford University Press, p. 354-366 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Alcoholism
Substance-Related Disorders
Research
Outcome Assessment (Health Care)

Optimization of Finite-Differencing Kernels for Numerical Relativity Applications

Alfieri, R., Bernuzzi, S., Perego, A. & Radice, D., Jan 1 2018, Parallel Computing is Everywhere. Joubert, G. R., Dazzi, P., Peters, F., Danelutto, M. & Bassini, S. (eds.). IOS Press BV, p. 743-749 7 p. (Advances in Parallel Computing; vol. 32).

Research output: Chapter in Book/Report/Conference proceedingChapter

Relativity
Data storage equipment

Polyphosphazenes as an example of the element-blocks approach to new materials

Allcock, H. R., Jan 1 2018, New Polymeric Materials Based on Element-Blocks. Springer Singapore, p. 167-188 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Polymers
Organometallics
Phosphorus
Substitution reactions
Thermoplastic elastomers

Predicting Off-Target Effects of Therapeutic Antiviral Ribonucleosides: Inhibition of Mitochondrial RNA Transcription

Arnold, J. J. & Cameron, C. E., Feb 21 2018, Mitochondrial Dysfunction Caused by Drugs and Environmental Toxicants. wiley, Vol. 1-2. p. 407-417 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ribonucleosides
Therapeutic Uses
Transcription
Antiviral Agents
Viruses
5 Citations (Scopus)

Robust block preconditioners for biot’s model

Adler, J. H., Gaspar, F. J., Hu, X., Rodrigo, C. & Zikatanov, L. T., Jan 1 2018, Lecture Notes in Computational Science and Engineering. Springer Verlag, p. 3-16 14 p. (Lecture Notes in Computational Science and Engineering; vol. 125).

Research output: Chapter in Book/Report/Conference proceedingChapter

Preconditioner
Consolidation
Linear systems
Stabilized Finite Elements
Equivalent Norm

Stochastic Population Models

Fricks, J. & Hanks, E. M., Jan 1 2018, Handbook of Statistics. Srinivasa Rao, A. S. R. & Rao, C. R. (eds.). Elsevier B.V., p. 443-480 38 p. (Handbook of Statistics; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Model
Stochastic Model
Stochastic models
Random processes
Stochastic Simulation

Symmetric expansions of very well-poised basic hypergeometric series

Andrews, G. E., Jan 12 2018, Frontiers In Orthogonal Polynomials and Q-series. World Scientific Publishing Co. Pte Ltd, Vol. 1. p. 21-33 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Basic Hypergeometric Series
Symmetry
Symmetry Group
Symmetric group
Series
2 Citations (Scopus)

The biochemistry and physiology of respiratory-driven reversed methanogenesis

Nazem-Bokaee, H., Yan, Z., Maranas, C. D. & Ferry, J. G., Jun 20 2018, Methane Biocatalysis: Paving the Way to Sustainability. Springer International Publishing, p. 183-197 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Respiratory Physiological Phenomena
Biochemistry
Physiology
1 Citation (Scopus)

The inviscid limit and boundary layers for navier-stokes flows

Maekawa, Y. & Mazzucato, A. L., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 781-828 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Inviscid Limit
Stokes flow
incompressible flow
Incompressible flow
Stokes Flow

The Use of 13C Direct-Detect NMR to Characterize Flexible and Disordered Proteins

Cook, E. C., Usher, G. A. & Showalter, S. A., Jan 1 2018, Methods in Enzymology. Rhoades, E. (ed.). Academic Press Inc., p. 81-100 20 p. (Methods in Enzymology; vol. 611).

Research output: Chapter in Book/Report/Conference proceedingChapter

Intrinsically Disordered Proteins
Nuclear magnetic resonance
Nuclear magnetic resonance spectroscopy
Magnetic Resonance Spectroscopy
Proteins
2 Citations (Scopus)

Using Peptide Mimics to Study the Biosynthesis of the Side-Ring System of Nosiheptide

Wang, B., LaMattina, J. W., Badding, E. D., Gadsby, L. K., Grove, T. L. & Booker, S. J., Jan 1 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 241-268 28 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biosynthesis
S-Adenosylmethionine
Peptides
Pharmacokinetics
Antimalarials

Variational modeling and complex fluids

Giga, M. H., Kirshtein, A. & Liu, C., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 73-113 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Complex Fluids
ideal fluids
Ideal Fluid
Fluids
Viscoelastic Fluid
1 Citation (Scopus)

Weak brill-noether for rational surfaces

Coskun, I. & Huizenga, J. W., Jan 1 2018, Contemporary Mathematics. American Mathematical Society, p. 81-104 24 p. (Contemporary Mathematics; vol. 712).

Research output: Chapter in Book/Report/Conference proceedingChapter

Rational Surface
Noether
Sheaves
Moduli Space
Hirzebruch Surface
2017
5 Citations (Scopus)

Active galactic nuclei as high-energy neutrino sources

Murase, K., Mar 20 2017, Neutrino Astronomy: Current Status, Future Prospects. World Scientific Publishing Co. Pte Ltd, p. 15-31 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

active galactic nuclei
neutrinos
energy
cosmic rays
accelerators

Anaerobic metabolism of aromatic compounds

Haddock, J. D. & Ferry, J. G., Jan 1 2017, Bioprocessing and Biotreatment of Coal. CRC Press, p. 393-416 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

metabolism
degradation
carbon
amino acid
microorganism

An overview

Ashtekar, A. & Pulliny, J., Mar 16 2017, Loop Quantum Gravity: The First 30 Years. World Scientific Publishing Co. Pte Ltd, p. 5-27 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

19 Citations (Scopus)

A panoply of phototrophs: An Overview of the thermophilic chlorophototrophs of the microbial mats of Alkaline siliceous hot springs in Yellowstone National Park, WY, USA

Tank, M., Thiel, V., Ward, D. M. & Bryant, D. A., Apr 18 2017, Modern Topics in the Phototrophic Prokaryotes: Environmental and Applied Aspects. Springer International Publishing, p. 87-137 51 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hot Springs
hot springs
microbial mat
autotrophs
Chlorophyll
2 Citations (Scopus)

A review on dimension-reduction based tests for regressions

Guo, X. & Zhu, L., Jan 1 2017, From Statistics to Mathematical Finance: Festschrift in Honour of Winfried Stute. Springer International Publishing, p. 105-125 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anniversaries and Special Events
Dimension Reduction
Covariates
Regression Model
Regression
1 Citation (Scopus)

A second adjoint theorem for SL(2,ℝ)

Crisp, T. & Higson, N., Jan 1 2017, Contemporary Mathematics. American Mathematical Society, p. 73-101 29 p. (Contemporary Mathematics; vol. 691).

Research output: Chapter in Book/Report/Conference proceedingChapter

Reductive Group
Theorem
Context

Biopiracy

Satheeshkumar, P. K. & Narayanan, A., May 10 2017, Status and Strategies for Exploration. Springer Singapore, Vol. 1. p. 185-204 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Intellectual Property
Internationality
Intellectual property
Inventors
Nimodipine

Bouncing in gravitational field

Galperin, G. & Levi, M., Jan 1 2017, Contemporary Mathematics. American Mathematical Society, p. 129-139 11 p. (Contemporary Mathematics; vol. 698).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gravitational Field

Chapter 3: Structural Diversity in Fluorinated Polyphosphazenes: Exploring the Change from Crystalline Thermoplastics to High-performance Elastomers and Other New Materials

Allcock, H. R., Jan 1 2017, Fluorinated Polymers, Volume 1: Synthesis, Properties, Processing and Simulation. Ameduri, B., Sawada, H. & Tang, B. Z. (eds.). 24 ed. Royal Society of Chemistry, p. 54-79 26 p. (RSC Polymer Chemistry Series; vol. 2017-January, no. 24).

Research output: Chapter in Book/Report/Conference proceedingChapter

Elastomers
Thermoplastics
Polymers
Crystalline materials
Block copolymers
2 Citations (Scopus)

Conjectures about p-adic groups and their noncommutative geometry

Aubert, A. M., Baum, P. F., Plymen, R. & Solleveld, M., Jan 1 2017, Contemporary Mathematics. American Mathematical Society, p. 15-51 37 p. (Contemporary Mathematics; vol. 691).

Research output: Chapter in Book/Report/Conference proceedingChapter

P-adic Groups
Noncommutative Geometry
Correspondence
Baum-Connes Conjecture
Hecke Algebra

D. V. Anosov and our road to partial hyperbolicity

Brin, M. & Pesin, Y. B., Jan 1 2017, Contemporary Mathematics. American Mathematical Society, p. 23-28 6 p. (Contemporary Mathematics; vol. 692).

Research output: Chapter in Book/Report/Conference proceedingChapter

Partial Hyperbolicity
Interaction

Dmitry viktorovich anosov: His life and mathematics

Katok, A., 2017, Contemporary Mathematics. American Mathematical Society, Vol. 692. p. 1-12 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Life

DNA analysis

Weedn, V. W., Lee, D. A., Roby, R. K. & Holland, M. M., Jan 1 2017, Handbook of Analytical Therapeutic Drug Monitoring and Toxicology. CRC Press, p. 35-49 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA
Textbooks
2 Citations (Scopus)

Dual variational methods in optimal control theory

Bressan, A., Jan 1 2017, Nonlinear Controllability and Optimal Control. CRC Press, p. 219-236 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Semilinear Systems
Dual Method
Optimal Control Theory
Variational Methods
Control System

Ecology, Evolution, and the Cancer Patient

Read, A. F., Feb 14 2017, Ecology and Evolution of Cancer. Elsevier Inc., p. 255-257 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ecology
ecology
neoplasms
Neoplasms