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2020

Approaches to Whole-Genome Methylome Analysis in Plants

Yang, X. & Mackenzie, S. A., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 15-31 17 p. (Methods in Molecular Biology; vol. 2093).

Research output: Chapter in Book/Report/Conference proceedingChapter

Imaging the delivery and behavior of cellulose synthases in Arabidopsis thaliana using confocal microscopy

Duncombe, S. G., Barnes, W. J. & Anderson, C. T., Jan 1 2020, (Accepted/In press) Methods in Cell Biology. Academic Press Inc., (Methods in Cell Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunohistochemistry and RNA In Situ Hybridization in Mouse Brain Development

Liu, J. & Liu, A., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 475-489 15 p. (Methods in Molecular Biology; vol. 2047).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oligonucleotide Enrichment of HSV-1 Genomic DNA from Clinical Specimens for Use in High-Throughput Sequencing

Shipley, M. M., Rathbun, M. M. & Szpara, M. L., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 199-217 19 p. (Methods in Molecular Biology; vol. 2060).

Research output: Chapter in Book/Report/Conference proceedingChapter

Variable Selection and Feature Screening

Liu, W. & Li, R., Jan 1 2020, Advanced Studies in Theoretical and Applied Econometrics. Springer, p. 293-326 34 p. (Advanced Studies in Theoretical and Applied Econometrics; vol. 52).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

A refinement of the alladi–schur theorem

Andrews, G. E., Jan 1 2019, Developments in Mathematics. Springer New York LLC, p. 71-77 7 p. (Developments in Mathematics; vol. 58).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Bimolecular Fluorescence Complementation (BiFC) in Tissue Culture and in Developing Tissues of Drosophila to Study Protein-Protein Interactions

Matsui, Y. & Lai, Z. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 75-85 11 p. (Methods in Molecular Biology; vol. 1893).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Biosynthesis of chlorophylls and bacteriochlorophylls in green bacteria

Thweatt, J. L., Canniffe, D. P. & Bryant, D. A., 2019, Advances in Botanical Research. Grimm, B. (ed.). Academic Press Inc., p. 35-89 55 p. (Advances in Botanical Research; vol. 90).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Carbon–carbon bond formation by metallaphotoredox catalysis

Nacsa, E. D. & Macmillan, D. W. C., Jan 1 2019, Organic Reactions. John Wiley and Sons Inc., p. 471-545 75 p. (Organic Reactions; vol. 100).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 11: Collective Behaviour of Artificial Microswimmers in Response to Environmental Conditions

Altemose, A. & Sen, A., Jan 1 2019, Self-organized Motion: Physicochemical Design based on Nonlinear Dynamics. Lagzi, I., Pimienta, V., Suematsu, N. J., Nakata, S. & Kitahata, H. (eds.). 14 ed. Royal Society of Chemistry, p. 250-283 34 p. (RSC Theoretical and Computational Chemistry Series; vol. 2019-January, no. 14).

Research output: Chapter in Book/Report/Conference proceedingChapter

CryoEM reconstruction approaches to resolve asymmetric features

Goetschius, D. J., Lee, H. & Hafenstein, S., 2019, Advances in Virus Research. Rey, F. A. (ed.). Academic Press Inc., p. 73-91 19 p. (Advances in Virus Research; vol. 105).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cycles in the Supersingular ℓ-Isogeny Graph and Corresponding Endomorphisms

Bank, E., Camacho-Navarro, C., Eisenträger, K., Morrison, T. & Park, J., Jan 1 2019, Association for Women in Mathematics Series. Springer, p. 41-66 26 p. (Association for Women in Mathematics Series; vol. 19).

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineering allostery into proteins

Gorman, S. D., D’Amico, R. N., Winston, D. S. & Boehr, D. D., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 359-384 26 p. (Advances in Experimental Medicine and Biology; vol. 1163).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Information-Theoretic Inference of an Optimal Dictionary of Protein Supersecondary Structures

Konagurthu, A. S., Subramanian, R., Allison, L., Abramson, D., de la Banda, M. G., Stuckey, P. J. & Lesk, A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 123-131 9 p. (Methods in Molecular Biology; vol. 1958).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Intracellular structures of prokaryotes: Inclusions, compartments and assemblages

Shively, J. M., Cannon, G. C., Heinhorst, S., Fuerst, J. A., Bryant, D. A., Maupin-Furlow, J. A., Schüler, D., Pfeifer, F., Docampo, R., Dahl, C., Preiss, J., Steinbüchel, A. & Federici, B. A., Jan 1 2019, Encyclopedia of Microbiology. Elsevier, p. 716-738 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In Vivo Genome-Wide RNA Structure Probing with Structure-seq

Ritchey, L. E., Su, Z., Assmann, S. M. & Bevilacqua, P. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 305-341 37 p. (Methods in Molecular Biology; vol. 1933).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Metabolon formation by chemotaxis

Zhao, X. & Sen, A., 2019, Methods in Enzymology. Academic Press Inc., p. 45-62 18 p. (Methods in Enzymology; vol. 617).

Research output: Chapter in Book/Report/Conference proceedingChapter

Modern phylogenomics: Building phylogenetic trees using the multispecies coalescent model

Liu, L., Anderson, C., Pearl, D. & Edwards, S. V., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 211-239 29 p. (Methods in Molecular Biology; vol. 1910).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Monitoring proteome stress in live cells using halotag-based fluorogenic sensor

Liu, Y., Fares, M. & Zhang, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 171-182 12 p. (Methods in Molecular Biology; vol. 1873).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phototrophy and phototrophs

Bryant, D. A., Jan 1 2019, Encyclopedia of Microbiology. Elsevier, p. 527-537 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The Alstoscholarisine Alkaloids: Isolation, Structure Determination, Biogenesis, Biological Evaluation, and Synthesis

Mason, J. D. & Weinreb, S. M., Jan 1 2019, Alkaloids: Chemistry and Biology. Knölker, H-J. (ed.). Academic Press Inc., p. 115-150 36 p. (Alkaloids: Chemistry and Biology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2018

A review of exoplanets detection methods

Babu, G. J., Jan 1 2018, Springer Proceedings in Mathematics and Statistics. Springer New York LLC, p. 79-87 9 p. (Springer Proceedings in Mathematics and Statistics; vol. 244).

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug and Play” Domain

Holliday, G. L., Akiva, E., Meng, E. C., Brown, S. D., Calhoun, S., Pieper, U., Sali, A., Booker, S. J. & Babbitt, P. C., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 1-71 71 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

16 Scopus citations

Biochemical Approaches for Understanding Iron–Sulfur Cluster Regeneration in Escherichia coli Lipoyl Synthase During Catalysis

McCarthy, E. L. & Booker, S. J., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 217-239 23 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Chemical Tools for Studying the Impact of cis/trans Prolyl Isomerization on Signaling: A Case Study on RNA Polymerase II Phosphatase Activity and Specificity

Burkholder, N. T., Medellin, B., Irani, S., Matthews, W., Showalter, S. A. & Zhang, Y. J., Jan 1 2018, Methods in Enzymology. Allen, K. N. (ed.). Academic Press Inc., p. 269-297 29 p. (Methods in Enzymology; vol. 607).

Research output: Chapter in Book/Report/Conference proceedingChapter

Detecting purinosome metabolon formation with fluorescence microscopy

Pedley, A. M. & Benkovic, S. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 279-289 11 p. (Methods in Molecular Biology; vol. 1764).

Research output: Chapter in Book/Report/Conference proceedingChapter

Endomorphism algebras of abelian varieties with special reference to superelliptic Jacobians

Zarhin, Y. G., Jan 1 2018, Springer Proceedings in Mathematics and Statistics. Springer New York LLC, p. 477-528 52 p. (Springer Proceedings in Mathematics and Statistics; vol. 251).

Research output: Chapter in Book/Report/Conference proceedingChapter

Equations for viscoelastic fluids

Hu, X., Lin, F. H. & Liu, C., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 1045-1073 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Exoplanets and SETI

Wright, J. T., Nov 3 2018, Handbook of Exoplanets. Springer International Publishing, p. 3405-3412 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Multiparton pp and pA Collisions: From geometry to parton-parton correlations

Blok, B. & Strikman, M., Jan 1 2018, Advanced Series on Directions in High Energy Physics. World Scientific Publishing Co. Pte Ltd, p. 63-99 37 p. (Advanced Series on Directions in High Energy Physics; vol. 29).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

New statistical methods inspired by data collected from alcohol and substance abuse research

Buu, A. & Li, R., Jan 18 2018, Alcohol Use Disorders: A Developmental Science Approach to Etiology. Oxford University Press, p. 354-366 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optimization of Finite-Differencing Kernels for Numerical Relativity Applications

Alfieri, R., Bernuzzi, S., Perego, A. & Radice, D., Jan 1 2018, Parallel Computing is Everywhere. Joubert, G. R., Dazzi, P., Peters, F., Danelutto, M. & Bassini, S. (eds.). IOS Press BV, p. 743-749 7 p. (Advances in Parallel Computing; vol. 32).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyphosphazenes as an example of the element-blocks approach to new materials

Allcock, H. R., Jan 1 2018, New Polymeric Materials Based on Element-Blocks. Springer Singapore, p. 167-188 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Predicting Off-Target Effects of Therapeutic Antiviral Ribonucleosides: Inhibition of Mitochondrial RNA Transcription

Arnold, J. J. & Cameron, C. E., Feb 21 2018, Mitochondrial Dysfunction Caused by Drugs and Environmental Toxicants. wiley, Vol. 1-2. p. 407-417 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Radial velocities as an exoplanet discovery method

Wright, J. T., Nov 3 2018, Handbook of Exoplanets. Springer International Publishing, p. 619-631 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Robust block preconditioners for biot’s model

Adler, J. H., Gaspar, F. J., Hu, X., Rodrigo, C. & Zikatanov, L. T., Jan 1 2018, Lecture Notes in Computational Science and Engineering. Springer Verlag, p. 3-16 14 p. (Lecture Notes in Computational Science and Engineering; vol. 125).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Scopus citations

Stochastic Population Models

Fricks, J. & Hanks, E., 2018, Handbook of Statistics. Srinivasa Rao, A. S. R. & Rao, C. R. (eds.). Elsevier B.V., p. 443-480 38 p. (Handbook of Statistics; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

Symmetric expansions of very well-poised basic hypergeometric series

Andrews, G. E., Jan 12 2018, Frontiers In Orthogonal Polynomials and Q-series. World Scientific Publishing Co. Pte Ltd, Vol. 1. p. 21-33 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The biochemistry and physiology of respiratory-driven reversed methanogenesis

Nazem-Bokaee, H., Yan, Z., Maranas, C. D. & Ferry, J. G., Jun 20 2018, Methane Biocatalysis: Paving the Way to Sustainability. Springer International Publishing, p. 183-197 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

The inviscid limit and boundary layers for navier-stokes flows

Maekawa, Y. & Mazzucato, A., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 781-828 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

The Use of 13C Direct-Detect NMR to Characterize Flexible and Disordered Proteins

Cook, E. C., Usher, G. A. & Showalter, S. A., 2018, Methods in Enzymology. Rhoades, E. (ed.). Academic Press Inc., p. 81-100 20 p. (Methods in Enzymology; vol. 611).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Tightly packed planetary systems

Dawson, R. I., Nov 3 2018, Handbook of Exoplanets. Springer International Publishing, p. 2713-2730 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Using Peptide Mimics to Study the Biosynthesis of the Side-Ring System of Nosiheptide

Wang, B., LaMattina, J. W., Badding, E. D., Gadsby, L. K., Grove, T. L. & Booker, S. J., 2018, Methods in Enzymology. Bandarian, V. (ed.). Academic Press Inc., p. 241-268 28 p. (Methods in Enzymology; vol. 606).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Variational modeling and complex fluids

Giga, M. H., Kirshtein, A. & Liu, C., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 73-113 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Weak brill-noether for rational surfaces

Coskun, I. & Huizenga, J., Jan 1 2018, Contemporary Mathematics. American Mathematical Society, p. 81-104 24 p. (Contemporary Mathematics; vol. 712).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2017

Active galactic nuclei as high-energy neutrino sources

Murase, K., Mar 20 2017, Neutrino Astronomy: Current Status, Future Prospects. World Scientific Publishing Co. Pte Ltd, p. 15-31 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Anaerobic metabolism of aromatic compounds

Haddock, J. D. & Ferry, J. G., Jan 1 2017, Bioprocessing and Biotreatment of Coal. CRC Press, p. 393-416 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

An overview

Ashtekar, A. & Pulliny, J., Mar 16 2017, Loop Quantum Gravity: The First 30 Years. World Scientific Publishing Co. Pte Ltd, p. 5-27 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A panoply of phototrophs: An Overview of the thermophilic chlorophototrophs of the microbial mats of Alkaline siliceous hot springs in Yellowstone National Park, WY, USA

Tank, M., Thiel, V., Ward, D. M. & Bryant, D. A., Apr 18 2017, Modern Topics in the Phototrophic Prokaryotes: Environmental and Applied Aspects. Springer International Publishing, p. 87-137 51 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

25 Scopus citations

A review on dimension-reduction based tests for regressions

Guo, X. & Zhu, L., Jan 1 2017, From Statistics to Mathematical Finance: Festschrift in Honour of Winfried Stute. Springer International Publishing, p. 105-125 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations