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2013
37 Citations (Scopus)

Systematic methods for structurally consistent coarse-grained models

Noid, W. G., Jan 1 2013, Biomolecular Simulations: Biomolecular Simulations. Humana Press Inc., p. 487-531 45 p. (Methods in Molecular Biology; vol. 924).

Research output: Chapter in Book/Report/Conference proceedingChapter

Entropy
Mechanics
1 Citation (Scopus)

Systems mapping: A computational tool for personalized medicine

Fu, G., Liu, J., Luo, J., Wang, Z., Wang, Y., Wang, N. & Wu, R., Jan 1 2013, Handbook of Personalized Medicine: Advances in Nanotechnology, Drug Delivery and Therapy. Pan Stanford Publishing Pte. Ltd., p. 321-340 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Precision Medicine
Nanotechnology
Medicine

The Globin Family

Lesk, A. & Lecomte, J. T. J., Nov 22 2013, Protein Families: Relating Protein Sequence, Structure, and Function. wiley, p. 207-235 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
Hemoglobin
Amino acids
Bacteria
Crystal structure

The UKIRT planet finder

Jones, H. R. A., Barnes, J., Bryson, I., Adamson, A., Henry, D., Montgomery, D., Ives, D., Egan, I., Lunney, D., Rees, P., Rayner, J., Ramsey, L. W., Vacca, B., Tinney, C. & Liu, M., Jan 1 2013, Astrophysics and Space Science Proceedings. Springer Netherlands, Vol. 37. p. 329-341 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Planets
planets
planet
Stars
radial velocity
3 Citations (Scopus)

Three-dimensional, paper-based micro fluidic devices containing internal timers for running time-based diagnostic assays

Phillips, S. T. & Thom, N. K., Jan 1 2013, Microfluidic Diagnostics: Methods and Protocols. Humana Press Inc., p. 185-196 12 p. (Methods in Molecular Biology; vol. 949).

Research output: Chapter in Book/Report/Conference proceedingChapter

Equipment and Supplies
Waxes
Adhesives
Food
3 Citations (Scopus)

Three-dimensional Nanotube Networks and a New Horizon of Applications

Elias Arriaga, A. L., Perea Lopez, N., Rajukumar, L. P., McCreary, A., López-Urías, F., Terrones, H. & Terrones Maldonado, M., Sep 1 2013, Nanotube Superfiber Materials: Changing Engineering Design. Elsevier Inc., p. 457-493 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carbon Nanotubes
Nanotubes
Carbon nanotubes
Electronic properties
Mechanical properties

Tsp Protease

Keiler, K. C., Aug 29 2013, Handbook of Proteolytic Enzymes. Elsevier Ltd, Vol. 3. p. 3605-3607 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

C-terminal processing peptidase
3 Citations (Scopus)

Ultrafast infrared probes of electronic processes in materials

Asbury, J. B., Jan 1 2013, Ultrafast Infrared Vibrational Spectroscopy. CRC Press, p. 239-267 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Infrared radiation
probes
electronics
emerging
Flexible electronics
6 Citations (Scopus)

Using a distributed SDP approach to solve simulated protein molecular conformation problems

Fang, X. & Toh, K. C., Nov 1 2013, Distance Geometry: Theory, Methods, and Applications. Springer New York, Vol. 9781461451280. p. 351-376 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Conformation
Conformation
Protein
Molecules
Root mean square deviation
11 Citations (Scopus)

Whole-genome analysis of plasmodium spp. Utilizing a new agilent technologies DNA microarray platform

Painter Ponton, H. J., Altenhofen, L. M., Kafsack, B. F. C. & Llinas, M., Jan 1 2013, Malaria: Methods and Protocols. Humana Press Inc., p. 213-219 7 p. (Methods in Molecular Biology; vol. 923).

Research output: Chapter in Book/Report/Conference proceedingChapter

Plasmodium
Oligonucleotide Array Sequence Analysis
Genome
Technology
Oligonucleotide Probes
2012

A Amomentous arrow of time

Bojowald, M., Jan 1 2012, The Arrows of Time: A Debate in Cosmology. Springer Berlin Heidelberg, p. 169-189 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

cosmology
universe
histories
53 Citations (Scopus)

A Chronostratigraphic Division of the Precambrian: Possibilities and Challenges

Van Kranendonk, M. J., Altermann, W., Beard, B. L., Hoffman, P. F., Johnson, C. M., Kasting, J., Melezhik, V. A., Nutman, A. P., Papineau, D. & Pirajno, F., Jul 31 2012, The Geologic Time Scale 2012. Elsevier B.V., Vol. 1-2. p. 299-392 94 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Precambrian
2 Citations (Scopus)

A Local Linear Estimation Procedure for Functional Multilevel Modeling

Li, R., Root, T. L. & Shiffman, S., Mar 22 2012, Models for Intensive Longitudinal Data. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Linear Models
Research Personnel
Research
Pharmaceutical Preparations
7 Citations (Scopus)

Analysis of rna folding and ligand binding by conventional and high-throughput calorimetry

Sokoloski, J. E. & Bevilacqua, P. C., Jul 27 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 145-174 30 p. (Methods in Molecular Biology; vol. 905).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Folding
Calorimetry
Ligands
Differential Scanning Calorimetry
RNA

A new chapter in the history of malaria control

Boni, M. F. & Smith, D. L., Jan 1 2012, Issues of the Day: 100 Commentaries on Climate, Energy, the Environment, Transportation, and Public Health Policy. Taylor and Francis, p. 180-181 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

history
1 Citation (Scopus)

Column Technology: Open Tubular Columns

Dorman, Jr., F. L. & Dawes, P., Dec 1 2012, Gas Chromatography. Elsevier Inc., p. 79-96 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Crystallization of RNA-protein complexes: From synthesis and purification of individual components to crystals

Perederina, A. & Krasilnikov, A. S., Jul 27 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 123-143 21 p. (Methods in Molecular Biology; vol. 905).

Research output: Chapter in Book/Report/Conference proceedingChapter

Crystallization
RNA
Proteins
Biological Phenomena
Ribonucleoproteins
9 Citations (Scopus)

Discrete dynamic modeling of signal transduction networks

Saadatpour, A. & Albert, R. Z., Jan 1 2012, Methods in Molecular Biology. Humana Press Inc., p. 255-272 18 p. (Methods in Molecular Biology; vol. 880).

Research output: Chapter in Book/Report/Conference proceedingChapter

Abscisic Acid
Systems Analysis
Signal Transduction
Cell Survival
14 Citations (Scopus)

DNA extraction from aged skeletal samples for str typing by capillary electrophoresis

Huel, R., Amory, S., Bilić, A., Vidović, S., Jasaragić, E. & Parsons, T. J., Jan 20 2012, DNA Electrophoresis Protocols for Forensic Genetics. p. 185-198 14 p. (Methods in Molecular Biology; vol. 830).

Research output: Chapter in Book/Report/Conference proceedingChapter

Capillary Electrophoresis
DNA
Decontamination
Disasters
Silicon Dioxide

Electronic transport in graphene

Zhu, J., Nov 1 2012, Graphene Nanoelectronics: From Materials to Circuits. Springer US, Vol. 9781461405481. p. 17-49 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Graphene
Nanoribbons
Field effect transistors
Band structure
Transport properties
1 Citation (Scopus)

Emerging and Persistent Environmental Compound Analysis

Dorman, Jr., F. L. & Reiner, E. J., Dec 1 2012, Gas Chromatography. Elsevier Inc., p. 647-677 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Functional mapping of developmental processes: Theory, applications, and prospects

Das, K., Huang, Z., Liu, J., Fu, G., Li, J., Li, Y., Tong, C., Gai, J. & Wu, R., Jan 1 2012, Quantitative Trait Loci (QTL): Methods and Protocols. Humana Press Inc., p. 227-243 17 p. (Methods in Molecular Biology; vol. 871).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantitative Trait Loci
Biological Models
Systems Biology
Internal-External Control

GABAA and GABAC receptors: Regulation of assembly, localization, clustering and turnover

Luscher, B., Mar 22 2012, Receptor and Ion-Channel Trafficking: Cell Biology of Ligand-Gated and Voltage-Sensitive Ion Channels. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

GABA-A Receptors
gamma-Aminobutyric Acid
Cluster Analysis
Neural Inhibition
Aminobutyrates
17 Citations (Scopus)

Gel mobility shift assays to detect protein-RNA interactions

Yakhnin, A. V., Yakhnina, E. B. & Babitzke, P. L., Jul 27 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 201-211 11 p. (Methods in Molecular Biology; vol. 905).

Research output: Chapter in Book/Report/Conference proceedingChapter

Electrophoretic Mobility Shift Assay
Gels
RNA
Proteins
Calorimetry

Genome-wide association studies in disease risk calculation: The role of bioinformatics in patient care

Edwards, T. L., Edwards, D. R. V. & Ritchie, M. D., Jan 1 2012, Molecular Genetics and Personalized Medicine. Springer New York, p. 103-129 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

25 Citations (Scopus)

Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq

Wal, M. & Pugh, B. F., Jan 1 2012, Methods in Enzymology. Academic Press Inc., p. 233-250 18 p. (Methods in Enzymology; vol. 513).

Research output: Chapter in Book/Report/Conference proceedingChapter

Micrococcal Nuclease
Nucleosomes
Chromosome Mapping
Yeast
Genes

Gravitational wave data analysis

Sathyaprakash, B. S. & Schutz, B. F., Jan 1 2012, Advanced Gravitational Wave Detectors. Cambridge University Press, Vol. 9780521874298. p. 71-88 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

gravitational waves
polarization
sky
gravitational wave antennas
systems analysis

Internet based service networks

Cui, L., Tirupatikumara, S. R. & Albert, R. Z., Jan 1 2012, Springer Optimization and Its Applications. Springer International Publishing, p. 263-303 41 p. (Springer Optimization and Its Applications; vol. 58).

Research output: Chapter in Book/Report/Conference proceedingChapter

Service Composition
Network Optimization
Network Dynamics
User Preferences
Flow Pattern

Linear and nonlinear wave dynamics in amorphous photonic lattices

Rechtsman, M., Szameit, A. & Segev, M., Aug 29 2012, Nonlinear Photonics and Novel Optical Phenomena. Chen, Z., Chen, Z. & Morandotti, R. (eds.). p. 93-109 17 p. (Springer Series in Optical Sciences; vol. 170).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical lattices
Energy gap
Solitons
Photonics
Optics
1 Citation (Scopus)

Loop quantum gravity and cosmology

Bojowald, M., Jan 1 2012, Foundations of Space and Time: Reflections on Quantum Gravity. Cambridge University Press, Vol. 9780521114400. p. 211-256 46 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

cosmology
gravitation
brackets
anomalies
requirements
1 Citation (Scopus)

LTR retroelement-derived protein-coding genes and vertebrate evolution

Chalopin, D., Hoover, M., Galiana, D. & Volff, J. N., Nov 1 2012, Viruses: Essential Agents of Life. Springer Netherlands, Vol. 9789400748996. p. 269-282 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Retroelements
terminal repeat sequences
Terminal Repeat Sequences
retrotransposons
Vertebrates
1 Citation (Scopus)

MacMahon's dream

Andrews, G. E. & Paule, P., Apr 12 2012, PARTITIONS, Q-SERIES, AND MODULAR FORMS. p. 1-12 12 p. (Developments in Mathematics; vol. 23).

Research output: Chapter in Book/Report/Conference proceedingChapter

Plane Partitions
Generating Function
Retrieval
Partition
Alternatives
1 Citation (Scopus)

Male sterility and hybrid seed production

Mackenzie, S., Dec 1 2012, Plant Biotechnology and Agriculture. Elsevier Inc., p. 185-194 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

seed productivity
Male Infertility
male fertility
Seeds
3 Citations (Scopus)

Mechanistic analysis of the Hepatitis Delta Virus (HDV) ribozyme: Methods for RNA preparation, structure mapping, solvent isotope effects, and co-transcriptional cleavage

Chadalavada, D. M., Cerrone-Szakal, A. L., Wilcox, J. L., Siegfried, N. A. & Bevilacqua, P. C., Mar 19 2012, Ribozymes: Methods and Protocols. Hartig, J. (ed.). p. 21-40 20 p. (Methods in Molecular Biology; vol. 848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hepatitis Delta Virus
Catalytic RNA
Isotopes
RNA
Reverse Transcription
5 Citations (Scopus)

Methods for analyzing histone citrullination in chromatin structure and gene regulation

Li, P., Hu, J. & Wang, Y., Jan 2 2012, Transcriptional Regulation: Methods and Protocols. Vancura, A. (ed.). p. 473-488 16 p. (Methods in Molecular Biology; vol. 809).

Research output: Chapter in Book/Report/Conference proceedingChapter

Histones
Chromatin
Histone Code
Genes
Arginine
1 Citation (Scopus)

Molecular self-assemblies in co-crystals: Engineering chemical reactivity and organic semiconductors

Friščić, T., Varshney, D. B., Elacqua, E., Sumrak, J. C., Sokolov, A. N. & MacGillivray, L. R., Oct 31 2012, Molecular Self-Assembly: Advances and Applications. Pan Stanford Publishing Pte. Ltd., p. 223-238 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Crystal engineering
Chemical reactivity
Semiconducting organic compounds
Self assembly
7 Citations (Scopus)

Novel Nanocarbons for Adsorption

Gracia-Espino, E., López-Urías, F., Terrones, H. & Terrones Maldonado, M., Dec 1 2012, Novel Carbon Adsorbents. Elsevier Ltd, p. 3-34 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adsorption
60 Citations (Scopus)

RlmN and AtsB as models for the overproduction and characterization of radical SAM proteins

Lanz, N. D., Grove, T. L., Gogonea, C. B., Lee, K. H., Krebs, C. & Booker, S. J., Jan 1 2012, Methods in Enzymology. Academic Press Inc., p. 125-152 28 p. (Methods in Enzymology; vol. 516).

Research output: Chapter in Book/Report/Conference proceedingChapter

Methionine
Enzymes
Proteins
Iron
Explosions
1 Citation (Scopus)

RNA visualization in bacteria by fluorescence in situ hybridization

Russell, J. H. & Keiler, K. C., Jul 27 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 87-95 9 p. (Methods in Molecular Biology; vol. 905).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluorescence In Situ Hybridization
RNA
Bacteria
RNA Probes
Oligonucleotide Probes
18 Citations (Scopus)

Silver nanoparticle antimicrobials and related materials

Zhang, H., Wu, M. & Sen, A., Apr 1 2012, Nano-Antimicrobials: Progress and Prospects. Springer-Verlag Berlin Heidelberg, Vol. 9783642244285. p. 3-45 43 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Silver
Nanoparticles
Antimicrobial agents
Biofouling
Coatings
7 Citations (Scopus)

Statistical models for genetic mapping in polyploids: Challenges and opportunities

Li, J., Das, K., Liu, J., Fu, G., Li, Y., Tobias, C. & Wu, R., Jan 1 2012, Quantitative Trait Loci (QTL): Methods and Protocols. Humana Press Inc., p. 245-261 17 p. (Methods in Molecular Biology; vol. 871).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyploidy
Statistical Models
Chromosome Mapping
Chromosomes
Genome
3 Citations (Scopus)

Testing Time Series Linearity. Traditional and Bootstrap Methods

Berg, A., McMurry, T. & Politis, D. N., Jan 1 2012, Handbook of Statistics. Elsevier B.V., p. 27-42 16 p. (Handbook of Statistics; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bootstrap Method
Linearity
Time series
Testing
Resampling
11 Citations (Scopus)

The Global Oxygen Cycle

Kasting, J. F. & Canfield, D. E., Mar 29 2012, Fundamentals of Geobiology. John Wiley and Sons, p. 93-104 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

oxygen

The influence of metastatic breast cancer on the bone microenvironment

Mastro, A. M., Sosnoski, D. M., Krishnan, V. & Bussard, K. M., Jan 1 2012, Signaling Pathways and Molecular Mediators in Metastasis. Springer Netherlands, Vol. 9789400725584. p. 347-368 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bone Neoplasms
Osteoblasts
Breast Neoplasms
Osteoclasts
Bone and Bones
4 Citations (Scopus)

The issue of the beginning in quantum gravity

Ashtekar, A., Jan 1 2012, Einstein and the Changing Worldviews of Physics. Birkhauser Boston, p. 347-363 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantum Gravity
13 Citations (Scopus)

The Role of Microalgal Symbionts (Symbiodinium) in Holobiont Physiology

Weber, M. X. & Medina, M., Jan 1 2012, Advances in Botanical Research. Academic Press Inc., p. 119-140 22 p. (Advances in Botanical Research; vol. 64).

Research output: Chapter in Book/Report/Conference proceedingChapter

Symbiodinium
algae
symbionts
physiology
cell communication
2011
11 Citations (Scopus)

Acetate kinase and phosphotransacetylase

Ferry, J. G., Jan 1 2011, Methods in Enzymology. Academic Press Inc., p. 219-231 13 p. (Methods in Enzymology; vol. 494).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphate Acetyltransferase
Acetate Kinase
Methane
Methanosarcina
Acetyl Coenzyme A

An invariance principle for processes indexed by two parameters and some statistical applications

Denker, M. H. & Puri, M. L., Jul 11 2011, Probability Theory and Extreme Value Theory. De Gruyter Mouton, Vol. 2. p. 310-361 52 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Invariance Principle
Two Parameters
Weak Invariance Principle
Linear Rank Statistics
Nonparametric Statistics
1 Citation (Scopus)

Anticipatory Control of Voluntary Action: Merging the Ideas of Equilibrium-point Control and Synergic Control

Latash, M., Jan 1 2011, Motor Control: Theories, Experiments, and Applications. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Cohort Effect
Posture
Joints
Muscles

A sharpening of the remainder term in the higher-dimensional central limit theorem for multilinear rank statistics

Denker, M. H., Puri, M. L. & Rösler, U., Jul 11 2011, Probability Theory and Extreme Value Theory. De Gruyter Mouton, Vol. 2. p. 120-139 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Linear Rank Statistics
Rank Statistics
Error term
Asymptotic Normality
Central limit theorem