Eberly College of Science

Research Output

Research Output per year

1949 2021

• 2102405 Citations
• 520 h-Index
• 28667 Article
• 1293 Review article
• 1261 Conference contribution
• 703 Conference article
• 1894 More
  • 571 Comment/debate
  • 479 Chapter
  • 221 Editorial
  • 213 Letter
  • 177 Short survey
  • 176 Paper
  • 32 Book
  • 25 Foreword/postscript

Research Output per year

Research Output per year

Search results

• 2013

  On-shell physics and the positive Grassmannian

  Bourjaily, J., Jan 1 2013, XVIIth International Congress on Mathematical Physics: Aalborg, Denmark, 6-11 August 2012. World Scientific Publishing Co., 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • physics
  • scattering amplitude
  • expansion
  • geometry

• Penn State University Department of Statistics

  Harkness, W., Hettmansperger, T., Lin, D. K. J. & Rosenberger, J. L., Nov 1 2013, Strength in Numbers: The Rising of Academic Statistics Departments in the U. S.. Springer New York, p. 199-214 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Narrative
  • Statistics
  • Truth

• Permutation polynomials

  Mullen, G. L. & Wang, Q., Jan 1 2013, Handbook of Finite Fields. CRC Press, p. 215-240 26 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Permutation Polynomial
  • Polynomials
  • Polynomial
  • Roots
  • Odd
  12 Scopus citations

• Planets, stars and stellar systems: Volume 2: Astronomical techniques, software, and data

  Oswalt, T. D. & Bond, H. E., Jan 1 2013, Planets, Stars and Stellar Systems Volume 2: Astronomical Techniques, Software, and Data. Springer Netherlands, p. 1-508 508 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • stellar systems
  • astronomy
  • planets
  • planet
  • computer programs
  2 Scopus citations

• Polyphosphazenes as biomaterials

  Deng, M., Laurencin, C. T., Allcock, H. R. & Kumbar, S. G., Jan 1 2013, Polymeric Biomaterials: Structure and Function. CRC Press, Vol. 1. p. 84-126 43 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • poly(phosphazene)
  • Biomaterials
  • Biocompatible Materials
  • Tissue
  • Tissue engineering

• Primitive polynomials

  Mullen, G. L. & Panario, D., Jan 1 2013, Handbook of Finite Fields. CRC Press, p. 87-99 13 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Primitive Polynomial
  • Polynomials
  • Integer
  2 Scopus citations

• Processes and Interactions in Macrofaunal Assemblages at Hydrothermal Vents: A Modeling Perspective

  Shea, K., Metaxas, A., Young, C. R. & Fisher, C. R., Mar 19 2013, Magma to Microbe: Modeling Hydrothermal Processes at Oceanic Spreading Centers. American Geophysical Union, p. 259-274 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • hydrothermal vent
  • modeling
  • hydrothermal vent community
  • observational method
  • cold seep
  4 Scopus citations

• Reproductive phenology of large mammals

  Kerby, J. & Post, E. S., Nov 1 2013, Phenology: An Integrative Environmental Science. Springer Netherlands, p. 467-479 13 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Reindeer
  • Rangifer tarandus
  • reindeer
  • Alces alces
  • Cervus elaphus
  7 Scopus citations

• RNA Polymerase Reaction in Bacteria

  Jun, S. H., Warner, B. A. & Murakami, K. S., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 167-172 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bacteria
  • DNA-Directed RNA Polymerases
  • Transcription
  • Bacterial RNA
  • DNA
  3 Scopus citations

• Statistical methods for astronomy

  Feigelson, E. D. & Babu, G. J., Jan 1 2013, Planets, Stars and Stellar Systems Volume 2: Astronomical Techniques, Software, and Data. Springer Netherlands, p. 445-480 36 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • astronomy
  • statistics
  • high level languages
  • data smoothing
  • data mining
  9 Scopus citations

• Structure description and identi fication using the tableau representation of protein folding patterns

  Konagurthu, A. S. & Lesk, A. M., 2013, Protein Supersecondary Structures. Humana Press Inc., p. 51-59 9 p. (Methods in Molecular Biology; vol. 932).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Protein Folding
  • Protein Databases
  • Databases
  • Proteins
  2 Scopus citations

• Systematic methods for structurally consistent coarse-grained models

  Noid, W. G., 2013, Biomolecular Simulations: Biomolecular Simulations. Humana Press Inc., p. 487-531 45 p. (Methods in Molecular Biology; vol. 924).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Entropy
  • Mechanics
  • Systematic Reviews
  42 Scopus citations

• The Globin Family

  Lesk, A. M. & Lecomte, J. T. J., Nov 22 2013, Protein Families: Relating Protein Sequence, Structure, and Function. wiley, p. 207-235 29 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Proteins
  • Hemoglobin
  • Crystal structure
  • Amino acids
  • Bacteria

• The UKIRT planet finder

  Jones, H. R. A., Barnes, J., Bryson, I., Adamson, A., Henry, D., Montgomery, D., Ives, D., Egan, I., Lunney, D., Rees, P., Rayner, J., Ramsey, L. W., Vacca, B., Tinney, C. & Liu, M., Jan 1 2013, Astrophysics and Space Science Proceedings. Springer Netherlands, Vol. 37. p. 329-341 13 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Planets
  • planets
  • planet
  • Stars
  • radial velocity

• Three-dimensional, paper-based micro fluidic devices containing internal timers for running time-based diagnostic assays

  Phillips, S. T. & Thom, N. K., 2013, Microfluidic Diagnostics: Methods and Protocols. Humana Press Inc., p. 185-196 12 p. (Methods in Molecular Biology; vol. 949).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Equipment and Supplies
  • Waxes
  • Food
  5 Scopus citations

• Three-dimensional Nanotube Networks and a New Horizon of Applications

  Elias Arriaga, A. L., Perea Lopez, N., Rajukumar, L. P., McCreary, A., López-Urías, F., Terrones, H. & Terrones Maldonado, M., Sep 1 2013, Nanotube Superfiber Materials: Changing Engineering Design. Elsevier Inc., p. 457-493 37 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Carbon Nanotubes
  • Nanotubes
  • Carbon nanotubes
  • Electronic properties
  • Chirality
  4 Scopus citations

• Tsp Protease

  Keiler, K. C., Aug 29 2013, Handbook of Proteolytic Enzymes. Elsevier Ltd, Vol. 3. p. 3605-3607 3 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Ultrafast infrared probes of electronic processes in materials

  Asbury, J. B., Jan 1 2013, Ultrafast Infrared Vibrational Spectroscopy. CRC Press, p. 239-267 29 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Infrared radiation
  • probes
  • electronics
  • Photophysics
  • Polarons
  4 Scopus citations

• Using a distributed SDP approach to solve simulated protein molecular conformation problems

  Fang, X. & Toh, K. C., Nov 1 2013, Distance Geometry: Theory, Methods, and Applications. Springer New York, Vol. 9781461451280. p. 351-376 26 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Molecular Conformation
  • Protein
  • Conformation
  • Molecules
  • Robustness
  9 Scopus citations

• Whole-genome analysis of plasmodium spp. Utilizing a new agilent technologies DNA microarray platform

  Painter, H. J., Altenhofen, L. M., Kafsack, B. F. C. & Llinás, M., 2013, Malaria: Methods and Protocols. Humana Press Inc., p. 213-219 7 p. (Methods in Molecular Biology; vol. 923).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Plasmodium
  • Oligonucleotide Array Sequence Analysis
  • Genome
  • Technology
  • Oligonucleotide Probes
  14 Scopus citations
• 2012

  A Amomentous arrow of time

  Bojowald, M., Jan 1 2012, The Arrows of Time: A Debate in Cosmology. Springer Berlin Heidelberg, p. 169-189 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • cosmology
  • histories
  • universe

• A Local Linear Estimation Procedure for Functional Multilevel Modeling

  Li, R., Root, T. L. & Shiffman, S., Mar 22 2012, Models for Intensive Longitudinal Data. Oxford University Press

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Linear Models
  • Research Personnel
  • Pharmaceutical Preparations
  2 Scopus citations

• Analysis of rna folding and ligand binding by conventional and high-throughput calorimetry

  Sokoloski, J. E. & Bevilacqua, P. C., Jul 27 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 145-174 30 p. (Methods in Molecular Biology; vol. 905).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • RNA Folding
  • Calorimetry
  • Differential Scanning Calorimetry
  • Ligands
  • RNA
  7 Scopus citations

• A new chapter in the history of malaria control

  Boni, M. F. & Smith, D. L., Jan 1 2012, Issues of the Day: 100 Commentaries on Climate, Energy, the Environment, Transportation, and Public Health Policy. Taylor and Francis, p. 180-181 2 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Column Technology: Open Tubular Columns

  Dorman, Jr., F. L. & Dawes, P., Dec 1 2012, Gas Chromatography. Elsevier Inc., p. 79-96 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  3 Scopus citations

• Crystallization of RNA-protein complexes: From synthesis and purification of individual components to crystals

  Perederina, A. & Krasilnikov, A. S., 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 123-143 21 p. (Methods in Molecular Biology; vol. 905).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Crystallization
  • RNA
  • Proteins
  • mitochondrial RNA-processing endoribonuclease
  • bacteriophage T7 RNA polymerase
  5 Scopus citations

• Discrete dynamic modeling of signal transduction networks

  Saadatpour, A. & Albert, R., Jan 1 2012, Methods in Molecular Biology. Humana Press Inc., p. 255-272 18 p. (Methods in Molecular Biology; vol. 880).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Abscisic Acid
  • Systems Analysis
  • Signal Transduction
  • Cell Survival
  • Kinetics
  9 Scopus citations

• DNA extraction from aged skeletal samples for str typing by capillary electrophoresis

  Huel, R., Amory, S., Bilić, A., Vidović, S., Jasaragić, E. & Parsons, T. J., Jan 20 2012, DNA Electrophoresis Protocols for Forensic Genetics. Alonso, A. (ed.). p. 185-198 14 p. (Methods in Molecular Biology; vol. 830).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Capillary Electrophoresis
  • DNA
  • Body Remains
  • Decontamination
  • Disasters
  17 Scopus citations

• Electronic transport in graphene

  Zhu, J., Nov 1 2012, Graphene Nanoelectronics: From Materials to Circuits. Springer US, Vol. 9781461405481. p. 17-49 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Graphene
  • Nanoribbons
  • Band structure
  • Transport properties
  • Field effect transistors

• Emerging and Persistent Environmental Compound Analysis

  Dorman, Jr., F. L. & Reiner, E. J., Dec 1 2012, Gas Chromatography. Elsevier Inc., p. 647-677 31 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  4 Scopus citations

• GABAA and GABAC receptors: Regulation of assembly, localization, clustering and turnover

  Luscher, B., Mar 22 2012, Receptor and Ion-Channel Trafficking: Cell Biology of Ligand-Gated and Voltage-Sensitive Ion Channels. Oxford University Press

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • GABA-C receptor
  • GABA-A Receptors
  • gamma-Aminobutyric Acid
  • Cluster Analysis
  • Neural Inhibition

• Gel mobility shift assays to detect protein-RNA interactions

  Yakhnin, A. V., Yakhnin, H. & Babitzke, P., 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 201-211 11 p. (Methods in Molecular Biology; vol. 905).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Electrophoretic Mobility Shift Assay
  • Gels
  • RNA
  • Proteins
  • Tris-borate-EDTA buffer
  22 Scopus citations

• Genome-wide association studies in disease risk calculation: The role of bioinformatics in patient care

  Edwards, T. L., Edwards, D. R. V. & Ritchie, M. D., Jan 1 2012, Molecular Genetics and Personalized Medicine. Springer New York, p. 103-129 27 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq

  Wal, M. & Pugh, B. F., 2012, Methods in Enzymology. Academic Press Inc., p. 233-250 18 p. (Methods in Enzymology; vol. 513).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Micrococcal Nuclease
  • Chromosome Mapping
  • Yeast
  • Nucleosomes
  • Genes
  31 Scopus citations

• Gravitational wave data analysis

  Sathyaprakash, B. S. & Schutz, B. F., Jan 1 2012, Advanced Gravitational Wave Detectors. Cambridge University Press, Vol. 9780521874298. p. 71-88 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • gravitational waves
  • polarization
  • sky
  • gravitational wave antennas
  • systems analysis

• Internet based service networks

  Cui, L., Kumara, S. & Albert, R., Jan 1 2012, Springer Optimization and Its Applications. Springer International Publishing, p. 263-303 41 p. (Springer Optimization and Its Applications; vol. 58).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Service Composition
  • User Preferences
  • Quality of Service
  • Network Dynamics
  • Network Optimization

• Linear and nonlinear wave dynamics in amorphous photonic lattices

  Rechtsman, M., Szameit, A. & Segev, M., Aug 29 2012, Nonlinear Photonics and Novel Optical Phenomena. Chen, Z., Chen, Z. & Morandotti, R. (eds.). p. 93-109 17 p. (Springer Series in Optical Sciences; vol. 170).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Optical lattices
  • Energy gap
  • Solitons
  • Photonics
  • Optics

• Loop quantum gravity and cosmology

  Bojowald, M., Jan 1 2012, Foundations of Space and Time: Reflections on Quantum Gravity. Cambridge University Press, Vol. 9780521114400. p. 211-256 46 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • cosmology
  • gravitation
  • anomalies
  • brackets
  • requirements
  1 Scopus citations

• LTR retroelement-derived protein-coding genes and vertebrate evolution

  Chalopin, D., Hoover, M., Galiana, D. & Volff, J. N., Nov 1 2012, Viruses: Essential Agents of Life. Springer Netherlands, Vol. 9789400748996. p. 269-282 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Retroelements
  • Terminal Repeat Sequences
  • terminal repeat sequences
  • retrotransposons
  • Genes
  2 Scopus citations

• MacMahon's dream

  Andrews, G. E. & Paule, P., Apr 12 2012, PARTITIONS, Q-SERIES, AND MODULAR FORMS. ALLADI, KRISHNASWAMI. & GARVAN, FRANK. (eds.). p. 1-12 12 p. (Developments in Mathematics; vol. 23).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Plane Partitions
  • Retrieval
  • Generating Function
  • Partition
  • Alternatives
  1 Scopus citations

• Male sterility and hybrid seed production

  Mackenzie, S., Dec 1 2012, Plant Biotechnology and Agriculture. Elsevier Inc., p. 185-194 10 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  3 Scopus citations

• Mechanistic analysis of the Hepatitis Delta Virus (HDV) ribozyme: Methods for RNA preparation, structure mapping, solvent isotope effects, and co-transcriptional cleavage

  Chadalavada, D. M., Cerrone-Szakal, A. L., Wilcox, J. L., Siegfried, N. A. & Bevilacqua, P. C., Mar 19 2012, Ribozymes: Methods and Protocols. Hartig, J. (ed.). p. 21-40 20 p. (Methods in Molecular Biology; vol. 848).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Hepatitis Delta Virus
  • Catalytic RNA
  • Isotopes
  • RNA
  • Reverse Transcription
  3 Scopus citations

• Methods for analyzing histone citrullination in chromatin structure and gene regulation

  Li, P., Hu, J. & Wang, Y., Jan 2 2012, Transcriptional Regulation: Methods and Protocols. Vancura, A. (ed.). p. 473-488 16 p. (Methods in Molecular Biology; vol. 809).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Citrullination
  • Histones
  • Chromatin
  • Histone Code
  • Arginine
  5 Scopus citations

• Molecular self-assemblies in co-crystals: Engineering chemical reactivity and organic semiconductors

  Friščić, T., Varshney, D. B., Elacqua, E., Sumrak, J. C., Sokolov, A. N. & MacGillivray, L. R., Oct 31 2012, Molecular Self-Assembly: Advances and Applications. Pan Stanford Publishing Pte. Ltd., p. 223-238 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  1 Scopus citations

• Novel Nanocarbons for Adsorption

  Gracia-Espino, E., López-Urías, F., Terrones, H. & Terrones, M., Dec 1 2012, Novel Carbon Adsorbents. Elsevier Ltd, p. 3-34 32 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  8 Scopus citations

• RlmN and AtsB as models for the overproduction and characterization of radical SAM proteins

  Lanz, N. D., Grove, T. L., Gogonea, C. B., Lee, K. H., Krebs, C. & Booker, S. J., 2012, Methods in Enzymology. Academic Press Inc., p. 125-152 28 p. (Methods in Enzymology; vol. 516).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Methionine
  • Enzymes
  • Proteins
  • Iron
  • Sulfides
  67 Scopus citations

• RNA visualization in bacteria by fluorescence in situ hybridization

  Russell, J. H. & Keiler, K. C., 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 87-95 9 p. (Methods in Molecular Biology; vol. 905).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Fluorescence In Situ Hybridization
  • RNA
  • Bacteria
  • tmRNA
  • RNA Probes
  1 Scopus citations

• Silver nanoparticle antimicrobials and related materials

  Zhang, H., Wu, M. & Sen, A., Apr 1 2012, Nano-Antimicrobials: Progress and Prospects. Springer-Verlag Berlin Heidelberg, Vol. 9783642244285. p. 3-45 43 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Silver nanoparticles
  • Silver
  • Biofouling
  • Coatings
  • Polymer films
  21 Scopus citations

• The influence of metastatic breast cancer on the bone microenvironment

  Mastro, A. M., Sosnoski, D. M., Krishnan, V. & Bussard, K. M., Jan 1 2012, Signaling Pathways and Molecular Mediators in Metastasis. Springer Netherlands, Vol. 9789400725584. p. 347-368 22 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bone Neoplasms
  • Osteoblasts
  • Breast Neoplasms
  • Osteoclasts
  • Bone and Bones

• The issue of the beginning in quantum gravity

  Ashtekar, A., Jan 1 2012, Einstein and the Changing Worldviews of Physics. Birkhauser Boston, p. 347-363 17 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  4 Scopus citations