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Research Output 1949 2020

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Review article
2020

A rewiring model of intratumoral interaction networks

Sang, M., Rice, S., Jiang, L., Liu, X., Gragnoli, C., Belani, C. P. & Wu, R., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 45-51 7 p.

Research output: Contribution to journalReview article

Open Access
Tumors
Neoplasms
Cells
Blueprints
Game theory

Glucocorticoid and triiodothyronine concentrations do not correlate with behavior in vicuñas (Vicugna vicugna)

Pritchard, C. E., Palme, R. & Langkilde, T., Jan 15 2020, In : General and Comparative Endocrinology. 286, 113299.

Research output: Contribution to journalReview article

vicunas
New World Camelids
Triiodothyronine
triiodothyronine
glucocorticoids

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells

Hardison, R. C., Zhang, Y., Keller, C. A., Xiang, G., Heuston, E. F., An, L., Lichtenberg, J., Giardine, B. M., Bodine, D., Mahony, S., Li, Q., Yue, F., Weiss, M. J., Blobel, G. A., Taylor, J., Hughes, J., Higgs, D. R. & Göttgens, B., Jan 1 2020, In : IUBMB Life. 72, 1, p. 27-38 12 p.

Research output: Contribution to journalReview article

Open Access
GATA Transcription Factors
Paint
Epigenomics
Genes
Chromatin
3 Citations (Scopus)

The Giant Radio Array for Neutrino Detection (GRAND): Science and design

Álvarez-Muñiz, J., Alves Batista, R., Balagopal V, A., Bolmont, J., Bustamante, M., Carvalho, W., Charrier, D., Cognard, I., Decoene, V., Denton, P. B., De Jong, S., De Vries, K. D., Engel, R., Fang, K., Finley, C., Gabici, S., Gou, Q. B., Gu, J. H., Guépin, C., Hu, H. B. & 30 others, Huang, Y., Kotera, K., Le Coz, S., Lenain, J. P., Lü, G. L., Martineau-Huynh, O., Mostafá, M., Mottez, F., Murase, K., Niess, V., Oikonomou, F., Pierog, T., Qian, X. L., Qin, B., Ran, D., Renault-Tinacci, N., Roth, M., Schröder, F. G., Schüssler, F., Tasse, C., Timmermans, C., Tueros, M., Wu, X. P., Zarka, P., Zech, A., Zhang, B. T., Zhang, J. L., Zhang, Y., Zheng, Q. & Zilles, A., Jan 1 2020, In : Science China: Physics, Mechanics and Astronomy. 63, 1, 219501.

Research output: Contribution to journalReview article

neutrinos
cosmic rays
radio antennas
energy
cosmic ray showers

Towards common ground in the biodiversity–disease debate

Rohr, J. R., Civitello, D. J., Halliday, F. W., Hudson, P. J., Lafferty, K. D., Wood, C. L. & Mordecai, E. A., Jan 1 2020, In : Nature Ecology and Evolution. 4, 1, p. 24-33 10 p.

Research output: Contribution to journalReview article

biodiversity
infectious disease
infectious diseases
zoonoses
wildlife
2019
3 Citations (Scopus)

An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes

Bevilacqua, P. C., Harris, M. E., Piccirilli, J. A., Gaines, C., Ganguly, A., Kostenbader, K., Ekesan, Ş. & York, D. M., Jun 21 2019, In : ACS chemical biology. 14, 6, p. 1068-1076 9 p.

Research output: Contribution to journalReview article

RNA Cleavage
Catalytic RNA
Ontology
RNA
Enzymes

A regulatory network for mir156-spl module in arabidopsis thaliana

Zheng, C., Ye, M., Sang, M. & Wu, R., Dec 2 2019, In : International journal of molecular sciences. 20, 24, 6166.

Research output: Contribution to journalReview article

Open Access
Arabidopsis
modules
sequencing
determinants
genes
1 Citation (Scopus)

A review of analytical platforms for accurate bile acid measurement

Dutta, M., Cai, J., Gui, W. & Patterson, A. D., Jul 19 2019, In : Analytical and Bioanalytical Chemistry. 411, 19, p. 4541-4549 9 p.

Research output: Contribution to journalReview article

Bile Acids and Salts
Clinical laboratories
Intestinal Diseases
Molecules
Liquid chromatography
7 Citations (Scopus)

Arf GTPases and their GEFs and GAPS: Concepts and challenges

Sztul, E., Chen, P. W., Casanova, J. E., Cherfils, J., Dacks, J. B., Lambright, D. G., Lee, F. J. S., Randazzo, P. A., Santy, L. C., Schürmann, A., Wilhelmi, I., Yohe, M. E. & Kahn, R. A., Jan 1 2019, In : Molecular biology of the cell. 30, 11, p. 1249-1271 23 p.

Research output: Contribution to journalReview article

Open Access
GTP Phosphohydrolases
Proteins
GTPase-Activating Proteins
Guanine Nucleotide Exchange Factors
Pliability
16 Citations (Scopus)

A roadmap for electronic grade 2D materials

Briggs, N., Subramanian, S., Lin, Z., Li, X., Zhang, X., Zhang, K., Xiao, K., Geohegan, D., Wallace, R., Chen, L. Q., Terrones, M., Ebrahimi, A., Das, S., Redwing, J., Hinkle, C., Momeni, K., Van Duin, A., Crespi, V., Kar, S. & Robinson, J. A., Jan 17 2019, In : 2D Materials. 6, 2, 022001.

Research output: Contribution to journalReview article

Open Access
grade
engineering
electronics
molybdenum disulfides
Tungsten

A survey of some tensor analysis techniques for biological systems

Yahyanejad, F., Albert, R. & DasGupta, B., Dec 1 2019, In : Quantitative Biology. 7, 4, p. 266-277 12 p.

Research output: Contribution to journalReview article

Open Access
Biological systems
Biological Systems
Tensors
Tensor
Mathematics

Asymmetry in icosahedral viruses

Goetschius, D. J., Parrish, C. R. & Hafenstein, S., Jun 1 2019, In : Current Opinion in Virology. 36, p. 67-73 7 p.

Research output: Contribution to journalReview article

Leviviridae
Genome
Viruses
Picornaviridae
Capsid Proteins

Atomistic electrodynamics simulations of plasmonic nanoparticles

Chen, X., Liu, P. & Jensen, L., Jul 3 2019, In : Journal of Physics D: Applied Physics. 52, 36, 363002.

Research output: Contribution to journalReview article

Electrodynamics
electrodynamics
Nanoparticles
nanoparticles
simulation

A unified mapping framework of multifaceted pharmacodynamic responses to hypertension interventions

Wang, Q., Gan, J., Wei, K., Berceli, S. A., Gragnoli, C. & Wu, R., Mar 1 2019, In : Drug Discovery Today. 24, 3, p. 883-889 7 p.

Research output: Contribution to journalReview article

Quantitative Trait Loci
Blood Pressure
Hypertension
Pharmaceutical Preparations
Patient Rights
2 Citations (Scopus)

A unified study of continuous and discontinuous Galerkin methods

Hong, Q., Wang, F., Wu, S. & Xu, J., Jan 1 2019, In : Science China Mathematics. 62, 1

Research output: Contribution to journalReview article

Discontinuous Galerkin Method
Galerkin Method
Finite Element Method
Nonconforming Finite Element Method
Converge

Beneath the surface: Community assembly and functions of the coral skeleton microbiome

Ricci, F., Rossetto Marcelino, V., Blackall, L. L., Kühl, M., Medina, M. & Verbruggen, H., Dec 12 2019, In : Microbiome. 7, 1, 159.

Research output: Contribution to journalReview article

Open Access
Anthozoa
Microbiota
Skeleton
Dysbiosis
Climate Change
4 Citations (Scopus)
Open Access
Pregnanolone
Peer Review
Antidepressive Agents
Neurotransmitter Agents
Depression
1 Citation (Scopus)

Bystander Selection for Antimicrobial Resistance: Implications for Patient Health

Morley, V. J., Woods, R. J. & Read, A. F., Oct 2019, In : Trends in Microbiology. 27, 10, p. 864-877 14 p.

Research output: Contribution to journalReview article

Open Access
Health Services Needs and Demand
Microbiota
Health
Infection
Anti-Bacterial Agents
2 Citations (Scopus)

Chemical and bio sensing using graphene-enhanced raman spectroscopy

Silver, A., Kitadai, H., Liu, H., Granzier-Nakajima, T., Terrones, M., Ling, X. & Huang, S., Apr 2019, In : Nanomaterials. 9, 4, 516.

Research output: Contribution to journalReview article

Open Access
Graphite
Graphene
Raman spectroscopy
Raman scattering
Molecules

Comparative Metabolomics of Early Development of the Parasitic Plants Phelipanche aegyptiaca and Triphysaria versicolor

Clermont, K., Collakova, E., Westwood, J. H., Yang, Z., dePamphilis, C. W. & Yoder, J. I., Jan 1 2019, In : Metabolites. 9, 6, 114.

Research output: Contribution to journalReview article

Open Access
Metabolomics
Plant Development
Aspartic Acid
Orobanchaceae
Parasites

Complex networks from classical to quantum

Biamonte, J., Faccin, M. & De Domenico, M., Dec 1 2019, In : Communications Physics. 2, 1, 53.

Research output: Contribution to journalReview article

Open Access
quantum computers
complex systems
intersections
physics
augmentation
2 Citations (Scopus)

Confronting models with data: The challenges of estimating disease spillover

Cross, P. C., Prosser, D. J., Ramey, A. M., Hanks, E. M. & Pepin, K. M., Sep 30 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1782, 20180435.

Research output: Contribution to journalReview article

Pathogens
pathogens
Livestock
Information Systems
prediction
6 Citations (Scopus)

Controlling nitrogen doping in graphene with atomic precision: Synthesis and characterization

Granzier-Nakajima, T., Fujisawa, K., Anil, V., Terrones, M. & Yeh, Y. T., Mar 2019, In : Nanomaterials. 9, 3, 425.

Research output: Contribution to journalReview article

Open Access
Graphite
Graphene
Nitrogen
Doping (additives)
Carbon
3 Citations (Scopus)

Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome

Postolache, T. T., del Bosque-Plata, L., Jabbour, S., Vergare, M., Wu, R. & Gragnoli, C., Apr 1 2019, In : American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 180, 3, p. 186-203 18 p.

Research output: Contribution to journalReview article

Type 2 Diabetes Mellitus
Comorbidity
Schizophrenia
Major Depressive Disorder
Genes
5 Citations (Scopus)

Defect Engineering and Surface Functionalization of Nanocarbons for Metal-Free Catalysis

Ortiz-Medina, J., Wang, Z., Cruz-Silva, R., Morelos-Gomez, A., Wang, F., Yao, X., Terrones, M. & Endo, M., Mar 27 2019, In : Advanced Materials. 31, 13, 1805717.

Research output: Contribution to journalReview article

Catalysis
Carbon
Metals
Defects
Nanostructured materials

Do Diradicals Behave like Radicals?

Stuyver, T., Chen, B., Zeng, T., Geerlings, P., De Proft, F. & Hoffmann, R., Nov 13 2019, In : Chemical Reviews. 119, 21, p. 11291-11351 61 p.

Research output: Contribution to journalReview article

Dimerization
Interchanges
Molecular orbitals
Ground state
Electronic structure
3 Citations (Scopus)

Dose-response and transmission: The nexus between reservoir hosts, nvironment and recipient hosts

Lunn, T. J., Restif, O., Peel, A. J., Munster, V. J., De Wit, E., Sokolow, S., Van Doremalen, N., Hudson, P. & McCallum, H., Sep 30 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1782, 20190016.

Research output: Contribution to journalReview article

disease reservoirs
Zoonoses
Pathogens
dose response
Nipah Virus
1 Citation (Scopus)

Emerging human infectious diseases and the links to global food production

Rohr, J. R., Barrett, C. B., Civitello, D. J., Craft, M. E., Delius, B., DeLeo, G. A., Hudson, P. J., Jouanard, N., Nguyen, K. H., Ostfeld, R. S., Remais, J. V., Riveau, G., Sokolow, S. H. & Tilman, D., Jun 1 2019, In : Nature Sustainability. 2, 6, p. 445-456 12 p.

Research output: Contribution to journalReview article

Emerging Communicable Diseases
infectious disease
food production
infectious diseases
contagious disease
1 Citation (Scopus)

Epitaxial graphene/silicon carbide intercalation: A minireview on graphene modulation and unique 2D materials

Briggs, N., Gebeyehu, Z. M., Vera, A., Zhao, T., Wang, K., De La Fuente Duran, A., Bersch, B., Bowen, T., Knappenberger, K. & Robinson, J. A., Sep 7 2019, In : Nanoscale. 11, 33, p. 15440-15447 8 p.

Research output: Contribution to journalReview article

Graphite
Intercalation
Silicon carbide
Graphene
Modulation
1 Citation (Scopus)

Evolutionary genetics in insect phenotypic radiations: the value of a comparative genomic approach

Hines, H. M. & Rahman, S. R., Dec 1 2019, In : Current Opinion in Insect Science. 36, p. 90-95 6 p.

Research output: Contribution to journalReview article

insect genetics
genomics
insect
gene
mimicry
37 Citations (Scopus)

FCC Physics Opportunities: Future Circular Collider Conceptual Design Report Volume 1

The FCC Collaboration, Jun 1 2019, In : European Physical Journal C. 79, 6, 474.

Research output: Contribution to journalReview article

Open Access
Colliding beam accelerators
Conceptual design
Physics
physics
Flavors
1 Citation (Scopus)

Generational biodegradable and regenerative polyphosphazene polymers and their blends with poly (lactic-co-glycolic acid)

Ogueri, K. S., Allcock, H. R. & Laurencin, C. T., Nov 2019, In : Progress in Polymer Science. 98, 101146.

Research output: Contribution to journalReview article

Polymers
glycolic acid
Biocompatible Materials
acids
Acids
Inverted Pendulum
pendulums
Pendulums
Vibration
icebergs

HETDEX Pilot Survey. VI. Emitters and Expectations for a Local Sample of Star-forming Galaxies in HETDEX

Indahl, B., Zeimann, G., Hill, G. J., Finkelstein, S. L., Ciardullo, R., Bridge, J. S., Chonis, T., Drory, N., Gronwall, C., Lee, H. & McQuinn, K., Oct 1 2019, In : Astrophysical Journal. 883, 2, 114.

Research output: Contribution to journalReview article

dark energy
emitters
telescopes
galaxies
stars
1 Citation (Scopus)

High-Energy Multimessenger Transient Astrophysics

Murase, K. & Bartos, I., Jan 1 2019, In : Annual Review of Nuclear and Particle Science. 69, p. 477-506 30 p.

Research output: Contribution to journalReview article

astrophysics
gravitational waves
neutrinos
particle production
astronomy
3 Citations (Scopus)

Interplay Between the Host, the Human Microbiome, and Drug Metabolism

Nichols, R. G., Peters, J. M. & Patterson, A. D., Jun 11 2019, In : Human genomics. 13, 1, 1 p.

Research output: Contribution to journalReview article

Open Access
Microbiota
Pharmaceutical Preparations
Carboxylic Ester Hydrolases
Bacterial Vaginosis
Prebiotics
15 Citations (Scopus)

Lynx X-Ray Observatory: an overview

Gaskin, J. A., Swartz, D. A., Vikhlinin, A., Özel, F., Gelmis, K. E., Arenberg, J. W., Bandler, S. R., Bautz, M. W., Civitani, M. M., Dominguez, A., Eckart, M. E., Falcone, A. D., Figueroa-Feliciano, E., Freeman, M. D., Günther, H. M., Havey, K. A., Heilmann, R. K., Kilaru, K., Kraft, R. P., Mccarley, K. S. & 11 others, Mcentaffer, R. L., Pareschi, G., Purcell, W., Reid, P. B., Schattenburg, M. L., Schwartz, D. A., Schwartz, E. D., Tananbaum, H. D., Tremblay, G. R., Zhang, W. W. & Zuhone, J. A., Apr 1 2019, In : Journal of Astronomical Telescopes, Instruments, and Systems. 5, 2, 021001.

Research output: Contribution to journalReview article

Open Access
Astrophysics
Observatories
observatories
observatory
astrophysics
6 Citations (Scopus)

Malaria eradication within a generation: ambitious, achievable, and necessary

Feachem, R. G. A., Chen, I., Akbari, O., Bertozzi-Villa, A., Bhatt, S., Binka, F., Boni, M. F., Buckee, C., Dieleman, J., Dondorp, A., Eapen, A., Sekhri Feachem, N., Filler, S., Gething, P., Gosling, R., Haakenstad, A., Harvard, K., Hatefi, A., Jamison, D., Jones, K. E. & 21 others, Karema, C., Kamwi, R. N., Lal, A., Larson, E., Lees, M., Lobo, N. F., Micah, A. E., Moonen, B., Newby, G., Ning, X., Pate, M., Quiñones, M., Roh, M., Rolfe, B., Shanks, D., Singh, B., Staley, K., Tulloch, J., Wegbreit, J., Woo, H. J. & Mpanju-Shumbusho, W., Sep 21 2019, In : The Lancet. 394, 10203, p. 1056-1112 57 p.

Research output: Contribution to journalReview article

Malaria
1 Citation (Scopus)

Mechanochemistry in Translation

Leininger, S. E., Narayan, K., Deutsch, C. & O'Brien, E. P., Nov 26 2019, In : Biochemistry. 58, 47, p. 4657-4666 10 p.

Research output: Contribution to journalReview article

Peptidyl Transferases
Protein folding
Protein Folding
Ribosomes
Tunnels
1 Citation (Scopus)
Open Access
Methanosarcina
S-Adenosylmethionine
Vitamin B 12
Archaea
Methane

Molecular Dialog between Parasitic Plants and Their Hosts

Clarke, C. R., Timko, M. P., Yoder, J. I., Axtell, M. & Westwood, J. H., Aug 25 2019, In : Annual Review of Phytopathology. 57, p. 279-299 21 p.

Research output: Contribution to journalReview article

parasitic plants
host plants
plant pathogens
parasitism
Orobanche

Molecular tools for coral reef restoration: Beyond biomarker discovery

Parkinson, J. E., Baker, A. C., Baums, I. B., Davies, S. W., Grottoli, A. G., Kitchen, S. A., Matz, M. V., Miller, M. W., Shantz, A. A. & Kenkel, C. D., Jan 1 2019, (Accepted/In press) In : Conservation Letters. e12687.

Research output: Contribution to journalReview article

Open Access
coral reefs
coral reef
biomarker
biomarkers
corals
1 Citation (Scopus)

Multiple Facets of Marine Invertebrate Conservation Genomics

Lopez, J. V., Kamel, B., Medina, M., Collins, T. & Baums, I. B., Feb 15 2019, In : Annual Review of Animal Biosciences. 7, p. 473-497 25 p.

Research output: Contribution to journalReview article

Invertebrates
Genomics
invertebrates
genomics
Biodiversity
3 Citations (Scopus)

Non-engineered and engineered adult neurogenesis in mammalian brains

Lei, W., Li, W., Ge, L. & Chen, G., Jan 1 2019, In : Frontiers in Neuroscience. 13, FEB, 131.

Research output: Contribution to journalReview article

Open Access
Neurogenesis
Neurons
Neuroglia
Brain
Technology
1 Citation (Scopus)

Nutritional status in chronic spinal cord injury: a systematic review and meta-analysis

Farkas, G. J., Pitot, M. A., Berg, A. & Gater, D., Jan 1 2019, In : Spinal Cord. 57, 1, p. 3-17 15 p.

Research output: Contribution to journalReview article

United States Department of Agriculture
Nutritional Status
Spinal Cord Injuries
Meta-Analysis
Confidence Intervals

Ode to Numbers by Sarah Glaz: Simsbury, CT: Antrim House, 2017, 102 pp., US $19, ISBN 978-1-943826-40-7

Grosholz, E. R., Mar 15 2019, In : Mathematical Intelligencer. 41, 1, p. 79-80 2 p.

Research output: Contribution to journalReview article

Ordinary Differential Equations
6 Citations (Scopus)

Overview of the high-definition x-ray imager instrument on the Lynx x-ray surveyor

Falcone, A. D., Kraft, R. P., Bautz, M. W., Gaskin, J. A., Mulqueen, J. A. & Swartz, D. A., Apr 1 2019, In : Journal of Astronomical Telescopes, Instruments, and Systems. 5, 2, 021019.

Research output: Contribution to journalReview article

Open Access
Image sensors
X rays
x rays
Silicon sensors
angular resolution
Open Access
Human Herpesvirus 1
Virus Diseases
Alzheimer Disease
Viruses
Infection
1 Citation (Scopus)

Posttranscription initiation control of gene expression mediated by bacterial RNA-binding proteins

Babitzke, P. L., Lai, Y. J., Renda, A. J. & Romeo, T., Jan 1 2019, In : Annual Review of Microbiology. 73, p. 43-67 25 p.

Research output: Contribution to journalReview article

Bacterial RNA
RNA-Binding Proteins
Bacterial Proteins
Gene Expression
Proteins

Probing RNA structure in vivo

Mitchell, D., Assmann, S. M. & Bevilacqua, P. C., Dec 2019, In : Current Opinion in Structural Biology. 59, p. 151-158 8 p.

Research output: Contribution to journalReview article

RNA
Ethyldimethylaminopropyl Carbodiimide
Glyoxal
Genome
Ficusin