Research Output 1972 2020

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Review article
2020

Resistant starch: impact on the gut microbiome and health

DeMartino, P. & Cockburn, D. W., Feb 2020, In : Current Opinion in Biotechnology. 61, p. 66-71 6 p.

Research output: Contribution to journalReview article

Starch
Microbiota
Health
Butyrates
Cross-Over Studies
2019

A biopsychosocial model of sex differences in children’s eating behaviors

Keller, K. L., Kling, S. M. R., Fuchs, B., Pearce, A. L., Reigh, N. A., Masterson, T. & Hickok, K., Mar 2019, In : Nutrients. 11, 3, 682.

Research output: Contribution to journalReview article

Open Access
Feeding Behavior
eating habits
gender differences
Sex Characteristics
Food
6 Citations (Scopus)

Bitter and sweet tasting molecules: It's complicated

Di Pizio, A., Ben Shoshan-Galeczki, Y., Hayes, J. E. & Niv, M. Y., May 1 2019, In : Neuroscience letters. 700, p. 56-63 8 p.

Research output: Contribution to journalReview article

G-Protein-Coupled Receptors
Cytochrome P-450 Enzyme System
Polypharmacology
Carbonic Anhydrases
Potassium Channels
2 Citations (Scopus)

Fabrication of starch - Nanocellulose composite fibers by electrospinning

Wang, H., Kong, L. & Ziegler, G. R., May 1 2019, In : Food Hydrocolloids. 90, p. 90-98 9 p.

Research output: Contribution to journalReview article

Electrospinning
Starch
starch
Fabrication
Fibers
1 Citation (Scopus)

Loss and formation of malodorous volatile sulfhydryl compounds during wine storage

Kreitman, G. Y., Elias, R. J., Jeffery, D. W. & Sacks, G. L., Jun 17 2019, In : Critical reviews in food science and nutrition. 59, 11, p. 1728-1752 25 p.

Research output: Contribution to journalReview article

Wine
Sulfhydryl Compounds
wines
transition elements
sulfides
1 Citation (Scopus)

Potatoes for Targeting Colon Cancer Stem Cells

Vanamala, J. K. P., Apr 15 2019, In : American Journal of Potato Research. 96, 2, p. 177-182 6 p.

Research output: Contribution to journalReview article

Neoplastic Stem Cells
Solanum tuberosum
colorectal neoplasms
Colonic Neoplasms
stem cells

Precision food safety: A paradigm shift in detection and control of foodborne pathogens

Kovac, J., May 2019, In : mSystems. 4, 3, e00164-19.

Research output: Contribution to journalReview article

Open Access
Food safety
paradigm shift
food safety
Food Safety
Pathogens
5 Citations (Scopus)

Reconsidering the classification of sweet taste liker phenotypes: A methodological review

Iatridi, V., Hayes, J. E. & Yeomans, M. R., Mar 2019, In : Food Quality and Preference. 72, p. 56-76 21 p.

Research output: Contribution to journalReview article

Pleasure
Phenotype
phenotype
Taste Perception
Addictive Behavior
2018
8 Citations (Scopus)

Causal relationship between diet-induced gut microbiota changes and diabetes: A novel strategy to transplant Faecalibacterium prausnitzii in preventing diabetes

Ganesan, K., Chung, S. K., Vanamala, J. & Xu, B., Dec 2018, In : International journal of molecular sciences. 19, 12, 3720.

Research output: Contribution to journalReview article

diets
Transplants
Nutrition
Medical problems
disorders
6 Citations (Scopus)

Grain and sweet sorghum (Sorghum bicolor L. Moench) serves as a novel source of bioactive compounds for human health

Vanamala, J. K. P., Massey, A. R., Pinnamaneni, S. R., Reddivari, L. & Reardon, K. F., Nov 22 2018, In : Critical reviews in food science and nutrition. 58, 17, p. 2867-2881 15 p.

Research output: Contribution to journalReview article

sweet sorghum
Sorghum
grain sorghum
Sorghum bicolor
human health
2017
81 Citations (Scopus)

A decade of discovery: CRISPR functions and applications

Barrangou, R. & Horvath, P., Jun 5 2017, In : Nature Microbiology. 2, 17092.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
CRISPR-Cas Systems
Bacteria
Archaea
Anniversaries and Special Events
19 Citations (Scopus)

CRISPR-based engineering of next-generation lactic acid bacteria

Hidalgo-Cantabrana, C., O'Flaherty, S. & Barrangou, R., Jun 1 2017, In : Current Opinion in Microbiology. 37, p. 79-87 9 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Probiotics
Lactic Acid
Technology
Bacteria
17 Citations (Scopus)

CRISPR-Cas Technologies and Applications in Food Bacteria

Stout, E., Klaenhammer, T. & Barrangou, R., Feb 28 2017, In : Annual Review of Food Science and Technology. 8, p. 413-437 25 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Technology
Bacteria
Food
bacteria
2 Citations (Scopus)

Food safety of farmstead cheese processors in Pennsylvania: An initial needs assessment

Machado, R. A. M., Radhakrishna, R. & Cutter, C. N., Mar 1 2017, In : Food Protection Trends. 37, 2, p. 88-98 11 p.

Research output: Contribution to journalReview article

needs assessment
Needs Assessment
Food Safety
Cheese
food safety
15 Citations (Scopus)

Food systems approach to cancer prevention

Vanamala, J. K. P., Aug 13 2017, In : Critical reviews in food science and nutrition. 57, 12, p. 2573-2588 16 p.

Research output: Contribution to journalReview article

Vegetables
Fruits
Systems Analysis
Food
neoplasms
8 Citations (Scopus)

Precision food safety: A systems approach to food safety facilitated by genomics tools

Kovac, J., Bakker, H. D., Carroll, L. M. & Wiedmann, M., Nov 2017, In : TrAC - Trends in Analytical Chemistry. 96, p. 52-61 10 p.

Research output: Contribution to journalReview article

Food safety
Medicine
Genomics
Pathogens
Risk assessment
2016
24 Citations (Scopus)

Commercially Available Rapid Methods for Detection of Selected Food-borne Pathogens

Valderrama, W. B., Dudley, E. G., Doores, S. & Cutter, C. N., Jul 3 2016, In : Critical reviews in food science and nutrition. 56, 9, p. 1519-1531 13 p.

Research output: Contribution to journalReview article

Pathogens
food pathogens
rapid methods
Food
Microorganisms
23 Citations (Scopus)

CRISPR-Based Typing and Next-Generation Tracking Technologies

Barrangou, R. & Dudley, E. G., Feb 28 2016, In : Annual review of food science and technology. 7, p. 395-411 17 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Technology
Bacteria
Food Supply
bacteria
10 Citations (Scopus)

Deciphering and shaping bacterial diversity through CRISPR

Briner, A. E. & Barrangou, R., Jun 1 2016, In : Current Opinion in Microbiology. 31, p. 101-108 8 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Bacteria
Bacteriophages
CRISPR-Cas Systems
Genome
29 Citations (Scopus)

Exploiting CRISPR-Cas immune systems for genome editing in bacteria

Barrangou, R. & van Pijkeren, J. P., Feb 1 2016, In : Current Opinion in Biotechnology. 37, p. 61-68 8 p.

Research output: Contribution to journalReview article

CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Immune system
Immune System
Bacteria

Fate of spoilage microorganisms associated with the production of pickled sausage using a cold fill process

Gaydos, N. J., Gourama, H., Scheinberg, J. A., Cutter, C. N. & Campbell, J. A., Sep 1 2016, In : Food Protection Trends. 36, 5, p. 348-356 9 p.

Research output: Contribution to journalReview article

pickling
sausages
Lactic Acid
Meat Products
Fungi
90 Citations (Scopus)

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease

Cockburn, D. & Koropatkin, N. M., Aug 14 2016, In : Journal of Molecular Biology. 428, 16, p. 3230-3252 23 p.

Research output: Contribution to journalReview article

Polysaccharides
Health
Carbohydrates
Prebiotics
Large Intestine
104 Citations (Scopus)

Practical value of food pathogen traceability through building a whole-genome sequencing network and database

Allard, M. W., Strain, E., Melka, D., Bunning, K., Musser, S. M., Brown, E. W. & Timme, R., Aug 2016, In : Journal of clinical microbiology. 54, 8, p. 1975-1983 9 p.

Research output: Contribution to journalReview article

Disease Outbreaks
Genome
Databases
Food
Foodborne Diseases
44 Citations (Scopus)

The Sus operon: a model system for starch uptake by the human gut Bacteroidetes

Foley, M. H., Cockburn, D. & Koropatkin, N. M., Jul 1 2016, In : Cellular and Molecular Life Sciences. 73, 14, p. 2603-2617 15 p.

Research output: Contribution to journalReview article

Bacteroidetes
Operon
Starch
Polysaccharides
Membranes
22 Citations (Scopus)
Propylthiouracil
Thiourea
Aptitude
Obesity
Food
2015
70 Citations (Scopus)

Advances in CRISPR-Cas9 genome engineering: Lessons learned from RNA interference

Barrangou, R., Birmingham, A., Wiemann, S., Beijersbergen, R. L., Hornung, V. & Smith, A. V. B., Mar 5 2015, In : Nucleic acids research. 43, 7, p. 3407-3419 13 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
RNA Interference
Genome
Genetic Therapy
Immune System
7 Citations (Scopus)

An assessment of food safety handling practices at farmers' markets in Rhode Island using a smartphone application

Vandeputte, E. G., Pivarnik, L. F., Scheinberg, J., Machado, R., Cutter, C. N. & Lofgren, I. E., Nov 1 2015, In : Food Protection Trends. 35, 6, p. 428-439 12 p.

Research output: Contribution to journalReview article

farmers' markets
Food Handling
Food Safety
food safety
food handling
38 Citations (Scopus)

Diversity of CRISPR-Cas immune systems and molecular machines

Barrangou, R., Nov 9 2015, In : Genome biology. 16, 1, 247.

Research output: Contribution to journalReview article

CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
nucleases
Adaptive Immunity
nucleic acid
5 Citations (Scopus)

Effect of food structure on the distribution and reactivity of small molecules

Zhao, Y., Elias, R. J. & Coupland, J. N., Aug 1 2015, In : Current Opinion in Food Science. 4, p. 19-24 6 p.

Research output: Contribution to journalReview article

Food Technology
reaction kinetics
chemical reactions
Emulsions
food science
75 Citations (Scopus)

Harnessing CRISPR-Cas systems for bacterial genome editing

Selle, K. & Barrangou, R., Apr 1 2015, In : Trends in Microbiology. 23, 4, p. 225-232 8 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
DNA Repair
Biological Phenomena
DNA Breaks
39 Citations (Scopus)

The Bacterial Origins of the CRISPR Genome-Editing Revolution

Sontheimer, E. J. & Barrangou, R., Jul 1 2015, In : Human Gene Therapy. 26, 7, p. 413-424 12 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Biological Science Disciplines
Archaea
Immune System
Genome
62 Citations (Scopus)

The roles of CRISPR-Cas systems in adaptive immunity and beyond

Barrangou, R., Feb 1 2015, In : Current Opinion in Immunology. 32, p. 36-41 6 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Adaptive Immunity
Bacteria
DNA
Archaea
17 Citations (Scopus)

Unraveling the potential of CRISPR-Cas9 for gene therapy

Barrangou, R. & May, A. P., Mar 1 2015, In : Expert Opinion on Biological Therapy. 15, 3, p. 311-314 4 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Gene therapy
Inborn Genetic Diseases
Double-Stranded DNA Breaks
2 Citations (Scopus)

Use of the smartphone application "food safe surveys" for data collection during direct concealed observations

Machado, R. A. M., Scheinberg, J. A., Pivarnik, L. F. & Cutter, C. N., Sep 1 2015, In : Food Protection Trends. 35, 5, p. 357-364 8 p.

Research output: Contribution to journalReview article

Epidemiologic Effect Modifiers
Food
food handling
Food Safety
food safety
2014
31 Citations (Scopus)

Analysis of surface binding sites (SBSs) in carbohydrate active enzymes with focus on glycoside hydrolase families 13 and 77 - a mini-review

Cockburn, D., Wilkens, C., Ruzanski, C., Andersen, S., Willum Nielsen, J., Smith, A. M., Field, R. A., Willemoës, M., Abou Hachem, M. & Svensson, B., Jan 1 2014, In : Biologia (Poland). 69, 6, p. 705-712 8 p.

Research output: Contribution to journalReview article

Glycoside Hydrolases
hydrolases
glycosides
binding sites
carbohydrate
34 Citations (Scopus)

Colon carcinogenesis: Influence of western diet-induced obesity and targeting stem cells using dietary bioactive compounds

Kasdagly, M., Radhakrishnan, S., Reddivari, L., Veeramachaneni, D. N. R. & Vanamala, J. K. P., Nov 1 2014, In : Nutrition. 30, 11-12, p. 1242-1256 15 p.

Research output: Contribution to journalReview article

Neoplastic Stem Cells
Colon
Carcinogenesis
Stem Cells
Colonic Neoplasms
292 Citations (Scopus)

CRISPR-cas systems: Prokaryotes upgrade to adaptive immunity

Barrangou, R. & Marraffini, L. A., Apr 24 2014, In : Molecular cell. 54, 2, p. 234-244 11 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Adaptive Immunity
Guide RNA
Endonucleases
DNA
50 Citations (Scopus)

Physical approaches to masking bitter taste: Lessons from food and pharmaceuticals

Coupland, J. N. & Hayes, J. E., Nov 2014, In : Pharmaceutical Research. 31, 11, p. 2921-2939 19 p.

Research output: Contribution to journalReview article

Food
Pharmaceutical Preparations
Phytochemicals
Saliva
Mouth
2013
34 Citations (Scopus)

Avocado (Persea americana) seed as a source of bioactive phytochemicals

Dabas, D., Shegog, R. M., Ziegler, G. R. & Lambert, J. D., Nov 25 2013, In : Current Pharmaceutical Design. 19, 34, p. 6133-6140 8 p.

Research output: Contribution to journalReview article

Persea
Phytochemicals
Seeds
Health
Lauraceae
95 Citations (Scopus)

CRISPR-Cas systems and RNA-guided interference

Barrangou, R., May 1 2013, In : Wiley Interdisciplinary Reviews: RNA. 4, 3, p. 267-278 12 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
RNA Interference
RNA
Guide RNA
Nucleic Acids
8 Citations (Scopus)
Food Safety
education programs
human resources
food safety
Education
84 Citations (Scopus)

Do polymorphisms in chemosensory genes matter for human ingestive behavior?

Hayes, J. E., Feeney, E. L. & Allen, A. L., Dec 1 2013, In : Food Quality and Preference. 30, 2, p. 202-216 15 p.

Research output: Contribution to journalReview article

bitterness
human behavior
genetic polymorphism
Food
food choices
33 Citations (Scopus)

Modulation of metabolic syndrome-related inflammation by cocoa

Gu, Y. & Lambert, J. D., Jun 1 2013, In : Molecular Nutrition and Food Research. 57, 6, p. 948-961 14 p.

Research output: Contribution to journalReview article

metabolic syndrome
anti-inflammatory activity
Anti-Inflammatory Agents
inflammation
Polyphenols
10 Citations (Scopus)

Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria

Abou Hachem, M., Andersen, J. M., Barrangou, R., Moller, M. S., Fredslund, F., Majumder, A., Ejby, M., Lahtinen, S. J., Jacobsen, S., Lo Leggio, L., Goh, Y. J., Klaenhammer, T. R. & Svensson, B., Aug 1 2013, In : Biocatalysis and Biotransformation. 31, 4, p. 226-235 10 p.

Research output: Contribution to journalReview article

Oligosaccharides
Probiotics
Metabolism
Bacteria
Prebiotics
1 Citation (Scopus)

Where are we heading with Salmonella molecular subtyping?

Shariat, N. & Dudley, E. G., Oct 1 2013, In : Future microbiology. 8, 10, p. 1231-1233 3 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Molecular Typing
Molecular Epidemiology
Salmonella Infections
Salmonella
2012
26 Citations (Scopus)

Composición y propiedades bioactivas de la Yerba Mate (Ilex paraguariensis a. St.-Hil.): Una revisión

Translated title of the contribution: Composition and bioactive properties of Yerba Mate (Ilex paraguariensis A. St.-Hil.): A reviewBurris, K. P., Harte, F. M., Michael Davidson, P., Stewart, C. N. & Zivanovic, S., Jun 1 2012, In : Chilean Journal of Agricultural Research. 72, 2, p. 268-274 7 p.

Research output: Contribution to journalReview article

yerba mate
Ilex paraguariensis
bioactive properties
beverages
tea
2011
1149 Citations (Scopus)

Evolution and classification of the CRISPR-Cas systems

Makarova, K. S., Haft, D. H., Barrangou, R., Brouns, S. J. J., Charpentier, E., Horvath, P., Moineau, S., Mojica, F. J. M., Wolf, Y. I., Yakunin, A. F., Van Der Oost, J. & Koonin, E. V., Jun 1 2011, In : Nature Reviews Microbiology. 9, 6, p. 467-477 11 p.

Research output: Contribution to journalReview article

CRISPR-Associated Proteins
Clustered Regularly Interspaced Short Palindromic Repeats
Archaea
Adaptive Immunity
Phylogeny
155 Citations (Scopus)

The role of antioxidant versus pro-oxidant effects of green tea polyphenols in cancer prevention

Forester, S. C. & Lambert, J. D., Jun 1 2011, In : Molecular Nutrition and Food Research. 55, 6, p. 844-854 11 p.

Research output: Contribution to journalReview article

Polyphenols
green tea
Tea
oxidants
Reactive Oxygen Species
115 Citations (Scopus)

Weight control and prevention of metabolic syndrome by green tea

Sae-Tan, S., Grove, K. A. & Lambert, J. D., Aug 1 2011, In : Pharmacological Research. 64, 2, p. 146-154 9 p.

Research output: Contribution to journalReview article

Camellia sinensis
Weights and Measures
Lipogenesis
Catechin
Dietary Fats
2010
1075 Citations (Scopus)

CRISPR/Cas, the immune system of Bacteria and Archaea

Horvath, P. & Barrangou, R., Jan 21 2010, In : Science. 327, 5962, p. 167-170 4 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Archaea
Immune System
Viruses
Bacteria