Institute for Computational and Data Sciences (ICDS)

  • United States

Research Output

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Letter
2020

Another chemolithotrophic metabolism missing in nature: sulfur comproportionation

Amend, J. P., Aronson, H. S., Macalady, J. & LaRowe, D. E., Jan 1 2020, (Accepted/In press) In : Environmental microbiology.

Research output: Contribution to journalLetter

Open Access

Rollman and Brent: Phonotype

Robinson, T. N., Reeves, B. & Ram, N., Jan 1 2020, (Accepted/In press) In : Journal of general internal medicine.

Research output: Contribution to journalLetter

Open Access
2019

A piezoelectric, strain-controlled antiferromagnetic memory insensitive to magnetic fields

Yan, H., Feng, Z., Shang, S., Wang, X., Hu, Z., Wang, J., Zhu, Z., Wang, H., Chen, Z., Hua, H., Lu, W., Wang, J., Qin, P., Guo, H., Zhou, X., Leng, Z., Liu, Z., Jiang, C., Coey, M. & Liu, Z., Feb 1 2019, In : Nature nanotechnology. 14, 2, p. 131-136 6 p.

Research output: Contribution to journalLetter

26 Scopus citations

Effects of pesticides on exposure and susceptibility to parasites can be generalised to pesticide class and type in aquatic communities

Rumschlag, S. L., Halstead, N. T., Hoverman, J. T., Raffel, T. R., Carrick, H. J., Hudson, P. J. & Rohr, J. R., Jun 2019, In : Ecology Letters. 22, 6, p. 962-972 11 p.

Research output: Contribution to journalLetter

Plasticity of the genomic haplotype of Synechococcus elongatus leads to rapid strain adaptation under laboratory conditions

Ungerer, J., Wendt, K. E., Hendry, J. I., Maranas, C. D. & Pakrasi, H. B., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 10, p. 3946-3947 2 p.

Research output: Contribution to journalLetter

Response to critique of article “Calibration of Safecast dose rate measurements”

Cervone, G. & Hultquist, C., Feb 2019, In : Journal of Environmental Radioactivity. 197, 1 p.

Research output: Contribution to journalLetter

Robust abatement pathways to tolerable climate futures require immediate global action

Lamontagne, J. R., Reed, P. M., Marangoni, G., Keller, K. & Garner, G. G., Apr 1 2019, In : Nature Climate Change. 9, 4, p. 290-294 5 p.

Research output: Contribution to journalLetter

8 Scopus citations

Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitness

Ford, S. A., Allen, S. L., Ohm, J. R., Sigle, L. T., Sebastian, A., Albert, I., Chenoweth, S. F. & McGraw, E. A., Nov 1 2019, In : Nature Microbiology. 4, 11, p. 1832-1839 8 p.

Research output: Contribution to journalLetter

4 Scopus citations

Thyroid cancer overdiagnosis and malpractice climate

Warrick, J. & Lengerich, E., Apr 2019, In : Archives of Pathology and Laboratory Medicine. 143, 4, p. 414-415 2 p.

Research output: Contribution to journalLetter

Open Access
2 Scopus citations
2018

A comparison of tanning habits among gym tanners and other tanners

Pagoto, S. L., Nahar, V. K., Frisard, C., Conroy, D. E., Lemon, S. C., Oleski, J. & Hillhouse, J., Sep 2018, In : JAMA Dermatology. 154, 9, p. 1090-1091 2 p.

Research output: Contribution to journalLetter

5 Scopus citations

A Cross-cultural Examination of the Noise-sensitivity Scale-short Form: Measurement Invariance Testing between the US and Chinese Samples

Miller, Z., HUANG, J. W., Costigan, H., LUO, J., DENG, H. J., XU, X. Q., Taff, B. D., SUN, C., YANG, X., WANG, Z. L., LIN, D., QU, S. W., Pan, B., LI, G. M. & Newman, P. B., Nov 1 2018, In : Biomedical and Environmental Sciences. 31, 11, p. 851-854 4 p.

Research output: Contribution to journalLetter

1 Scopus citations

An empirical evaluation of rule extraction from recurrent neural networks

Wang, Q., Zhang, K., Ororbia, A. G., Xing, X., Liu, X. & Giles, C. L., Sep 1 2018, In : Neural Computation. 30, 9, p. 2568-2591 24 p.

Research output: Contribution to journalLetter

6 Scopus citations

Anisotropic polarization-induced conductance at a ferroelectric–insulator interface

Zhang, Y., Lu, H., Xie, L., Yan, X., Paudel, T. R., Kim, J., Cheng, X., Wang, H., Heikes, C., Li, L., Xu, M., Schlom, D. G., Chen, L. Q., Wu, R., Tsymbal, E. Y., Gruverman, A. & Pan, X., Dec 1 2018, In : Nature nanotechnology. 13, 12, p. 1132-1136 5 p.

Research output: Contribution to journalLetter

11 Scopus citations

Apochromatic singlets enabled by metasurface-augmented GRIN lenses

Nagar, J., Campbell, S. D. & Werner, D. H., Feb 20 2018, In : Optica. 5, 2, p. 99-102 4 p., 2334-2536/18/020099-04.

Research output: Contribution to journalLetter

15 Scopus citations

Gender differences in the use of atypical antipsychotic medications for ICU delirium

Karamchandani, K., Schoaps, R. S., Printz, J., Kowaleski, J. M. & Carr, Z. J., Sep 21 2018, In : Critical Care. 22, 1, 220.

Research output: Contribution to journalLetter

Harvesting Fertilized Rye Cover Crop: Simulated Revenue, Net Energy, and Drainage Nitrogen Loss

Malone, R. W., Obrycki, J. F., Karlen, D. L., Ma, L., Kaspar, T. C., Jaynes, D. B., Parkin, T. B., Lence, S. H., Feyereisen, G. W., Fang, Q. X., Richard, T. L. & Gillette, K., Jan 1 2018, In : Agricultural and Environmental Letters. 3, 1, p. 1-5 5 p.

Research output: Contribution to journalLetter

Open Access
1 Scopus citations

Regarding global pediatric surgery training opportunities

Baird, R., Pandya, K., Lal, D. R., Calkins, C. M., Oldham, K. T., Tsai, A., Naik-Mathuria, B., St-Louis, E., Luc, M. K., LaRusso, K., Petroze, R., Lofberg, K. M., Biller, C. K., Villalona, G. A., Gourlay, D. M., Klein, M., DeUgarte, D., Cleary, M., Berdan, E. A., Siddiqui, S. & 13 others, Lo, A., Langer, M., Duffy, D., Blair, G., Beres, A., Laberge, J. M., Radulescu, A., Holterman, A. X., Hoover, J. D., Fitzgerald, T., Ganey, M., Krishnaswami, S. & Ozgediz, D., Jun 2018, In : Journal of pediatric surgery. 53, 6, p. 1256-1258 3 p.

Research output: Contribution to journalLetter

2 Scopus citations
2017

Age-specific infectious period shapes dynamics of pneumonia in bighorn sheep

Plowright, R. K., Manlove, K. R., Besser, T. E., Páez, D. J., Andrews, K. R., Matthews, P. E., Waits, L. P., Hudson, P. J. & Cassirer, E. F., Oct 2017, In : Ecology Letters. 20, 10, p. 1325-1336 12 p.

Research output: Contribution to journalLetter

10 Scopus citations

Reply to comment by Añel on “Most computational hydrology is not reproducible, so is it really science?”

Hutton, C., Wagener, T., Freer, J., Han, D., Duffy, C. & Arheimer, B., Mar 1 2017, In : Water Resources Research. 53, 3, p. 2575-2576 2 p.

Research output: Contribution to journalLetter

1 Scopus citations

Reply to comment by Melsen et al. on “Most computational hydrology is not reproducible, so is it really science?”

Hutton, C., Wagener, T., Freer, J., Han, D., Duffy, C. & Arheimer, B., Mar 1 2017, In : Water Resources Research. 53, 3, p. 2570-2571 2 p.

Research output: Contribution to journalLetter

2 Scopus citations

Reply to "comments on 'revisiting the relationship between eyewall contraction and intensification'"

Stern, D. P., Vigh, J. L., Nolan, D. S. & Zhang, F., Dec 1 2017, In : Journal of the Atmospheric Sciences. 74, 12, p. 4275-4286 12 p.

Research output: Contribution to journalLetter

2 Scopus citations
2016

Moving forward with fine-root definitions and research

McCormack, M. L., Iversen, C. M. & Eissenstat, D. M., Oct 1 2016, In : The New phytologist. 212, 2, 1 p.

Research output: Contribution to journalLetter

1 Scopus citations

Overweight and obesity among Major League Baseball players: 1871–2015

Conroy, D. E., Wolin, K. Y. & Carnethon, M. R., Sep 1 2016, In : Obesity Research and Clinical Practice. 10, 5, p. 610-612 3 p.

Research output: Contribution to journalLetter

2 Scopus citations

Pyrogeography: Build social costs into wildfire risk

Smithwick, E. A. H., Jul 13 2016, In : Nature. 535, 7611, 1 p.

Research output: Contribution to journalLetter

Wrist Accelerometry in the Health, Functional, and Social Assessment of Older Adults

Huisingh-Scheetz, M., Kocherginsky, M., Dugas, L., Payne, C., Dale, W., Conroy, D. E. & Waite, L., Apr 1 2016, In : Journal of the American Geriatrics Society. 64, 4, p. 889-891 3 p.

Research output: Contribution to journalLetter

3 Scopus citations
2015

Anthropological Genetics

Kitchen, A., Non, A. L., Gravlee, C. C., Mulligan, C. J., Warinner, C., Lewis, C. M., Bankoff, R. J., Randrianatoandro, H. D. D., Perry, G. H., Malhi, R. S., Bader, A. C. & Raff, J., Dec 1 2015, In : American Anthropologist. 117, 4, p. 736-737 2 p.

Research output: Contribution to journalLetter

3 Scopus citations

A roadmap for OH reactivity research

Williams, J. & Brune, W., Apr 1 2015, In : Atmospheric Environment. 106, p. 371-372 2 p.

Research output: Contribution to journalLetter

14 Scopus citations

A Stable Isotope Data Repository as Part of Neotoma, a Paleoecological Database

Pilaar Birch, S. E. & Graham, R. W., Sep 30 2015, In : BioScience. 65, 10, 1 p.

Research output: Contribution to journalLetter

1 Scopus citations

Comments on "Observations of wall cloud formation in supercell thunderstorms during VORTEX2"

Markowski, P., Richardson, Y., Kumjian, M., Anderson-Frey, A., Jimenez, G., Katona, B., Klees, A., Schrom, R. & Tobin, D., Jan 1 2015, In : Monthly Weather Review. 143, 10, p. 4278-4281 4 p.

Research output: Contribution to journalLetter

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M. T., Fong, S. S., Hatzimanikatis, V., Holder, A., Hucka, M., Hyduke, D., Jamshidi, N., Lee, S. Y., Le Novère, N., Lerman, J. A., Lewis, N. E. & 20 others, Ma, D., Mahadevan, R., Maranas, C., Nagarajan, H., Navid, A., Nielsen, J., Nielsen, L. K., Nogales, J., Noronha, A., Pal, C., Palsson, B. O., Papin, J. A., Patil, K. R., Price, N. D., Reed, J. L., Saunders, M., Senger, R. S., Sonnenschein, N., Sun, Y. & Thiele, I., Oct 1 2015, In : Molecular Systems Biology. 11, 10, 831.

Research output: Contribution to journalLetter

25 Scopus citations

International Year of Soils: United Nations highlights soil crisis

Lin, H. & Horn, R., Jan 29 2015, In : Nature. 517, 7536, 1 p.

Research output: Contribution to journalLetter

3 Scopus citations

Primate Conservation Genomics and Paleogenomics

Bankoff, R. J., Randrianatoandro, H. D. D. & Perry, G. H., Dec 1 2015, In : American Anthropologist. 117, 4, p. 742-743 2 p.

Research output: Contribution to journalLetter

1 Scopus citations
2014

Dissemination of scientific software with Galaxy ToolShed

Blankenberg, D. J., Von Kuster, G., Bouvier, E., Baker, D., Afgan, E., Stoler, N., Taylor, J., Nekrutenko, A., Clements, D., Coraor, N., Eberhard, C., Francheteau, D., Goecks, J., Guerler, S., Jackson, J. L., Cooke, I., Johnson, J., Kirton, E., Cock, P., Chapman, B. & 2 others, Grüning, B. & Lazarus, R., Feb 20 2014, In : Genome biology. 15, 2, 403.

Research output: Contribution to journalLetter

86 Scopus citations

Grocery stores and obesity: the authors reply

Cummins, S., Flint, E. & Matthews, S. A., May 1 2014, In : Health affairs (Project Hope). 33, 5, p. 907 1 p.

Research output: Contribution to journalLetter

Reduced yield stress for zirconium exposed to iodine: reactive force field simulation

Rossi, M. L., Taylor, C. D. & van Duin, A. C., Dec 1 2014, In : Advanced Modeling and Simulation in Engineering Sciences. 1, 1, 19.

Research output: Contribution to journalLetter

4 Scopus citations

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease

Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R. & 10 others, Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J., Weng, Z., White, K. P. & Hardison, R. C., Aug 19 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 33, p. E3366

Research output: Contribution to journalLetter

5 Scopus citations

Response

Jones, B. C., Huang, X., Mailman, R., Lu, L. & Williams, R. W., 2014, In : Journal of Biochemical and Molecular Toxicology. 28, 7, p. 291 1 p.

Research output: Contribution to journalLetter

Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil

Malaspinas, A. S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L. F., Li, M., Reis, S., Bernardo, D. V., Degiorgio, M., Duggan, A. T., Bastos, M., Wang, Y. & 20 others, Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D. J. & Willerslev, E., Nov 3 2014, In : Current Biology. 24, 21, p. R1035-R1037

Research output: Contribution to journalLetter

36 Scopus citations
2013

Alternating direction methods for latent variable gaussian graphical model selection

Ma, S., Xue, L. & Zou, H., Aug 7 2013, In : Neural computation. 25, 8, p. 2172-2198 27 p.

Research output: Contribution to journalLetter

49 Scopus citations

Open data: Crediting a culture of cooperation

Bolukbasi, B., Berente, N., Cutcher-Gershenfeld, J., Dechurch, L., Flint, C., Haberman, M., King, J. L., Knight, E., Lawrence, B., Masella, E., McElroy, C., Mittleman, B., Nolan, M., Radik, M., Shin, N., Thompson, C. A., Winter, S., Zaslavsky, I., Allison, M. L., Arctur, D. & 24 others, Arrigo, J., Aufdenkampe, A. K., Bass, J., Crowell, J., Daniels, M., Diggs, S., Duffy, C., Gil, Y., Gomez, B., Graves, S., Hazen, R., Hsu, L., Kinkade, D., Lehnert, K., Marone, C., Middleton, D., Noren, A., Pearthree, G., Ramamurthy, M., Robinson, E., Percivall, G., Richard, S., Suarez, C. & Walker, D., Jan 1 2013, In : Science. 342, 6162, p. 1041-1042 2 p.

Research output: Contribution to journalLetter

10 Scopus citations
2012

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E. & 66 others, Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F. & Adams, L. B., Aug 13 2012, In : Genome biology. 13, 8, 418.

Research output: Contribution to journalLetter

272 Scopus citations

Authors' response

Buxton, O. M. & Okechukwu, C. A., Nov 1 2012, In : Journal of occupational and environmental medicine. 54, 11, p. 1322-1323 2 p.

Research output: Contribution to journalLetter

NGS analyses by visualization with Trackster

Goecks, J., Coraor, N., Nekrutenko, A. & Taylor, J., Nov 1 2012, In : Nature Biotechnology. 30, 11, p. 1036-1039 4 p.

Research output: Contribution to journalLetter

25 Scopus citations