Institute for Computational and Data Sciences (ICDS)

  • United States

Research Output 1968 2020

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Review article
2020

#Science: The Potential and the Challenges of Utilizing Social Media and Other Electronic Communication Platforms in Health Care

Gijsen, V., Maddux, M., Lavertu, A., Gonzalez-Hernandez, G., Ram, N., Reeves, B., Robinson, T., Ziesenitz, V., Shakhnovich, V. & Altman, R., Jan 1 2020, In : Clinical and Translational Science. 13, 1, p. 26-30 5 p.

Research output: Contribution to journalReview article

Open Access
Social Media
Health care
Communication
Delivery of Health Care
Bioelectric potentials

Metabolic model guided strain design of cyanobacteria

Hendry, J. I., Bandyopadhyay, A., Srinivasan, S., Pakrasi, H. B. & Maranas, C. D., Aug 1 2020, In : Current Opinion in Biotechnology. 64, p. 17-23 7 p.

Research output: Contribution to journalReview article

1-Butanol
Sunlight
Cyanobacteria
Metabolic Networks and Pathways
Carbon Dioxide

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells

Hardison, R. C., Zhang, Y., Keller, C. A., Xiang, G., Heuston, E. F., An, L., Lichtenberg, J., Giardine, B. M., Bodine, D., Mahony, S., Li, Q., Yue, F., Weiss, M. J., Blobel, G. A., Taylor, J., Hughes, J., Higgs, D. R. & Göttgens, B., Jan 1 2020, In : IUBMB Life. 72, 1, p. 27-38 12 p.

Research output: Contribution to journalReview article

Open Access
GATA Transcription Factors
Paint
Epigenomics
Genes
Chromatin

Towards common ground in the biodiversity–disease debate

Rohr, J. R., Civitello, D. J., Halliday, F. W., Hudson, P. J., Lafferty, K. D., Wood, C. L. & Mordecai, E. A., Jan 1 2020, In : Nature Ecology and Evolution. 4, 1, p. 24-33 10 p.

Research output: Contribution to journalReview article

biodiversity
infectious disease
infectious diseases
zoonoses
wildlife
2019

A control-theoretic perspective on cyber-physical privacy: Where data privacy meets dynamic systems

Lu, Y. & Zhu, M., Jan 1 2019, In : Annual Reviews in Control. 47, p. 423-440 18 p.

Research output: Contribution to journalReview article

Data privacy
Dynamical systems
Cyber Physical System
2 Citations (Scopus)

ACT-R: A cognitive architecture for modeling cognition

Ritter, F. E., Tehranchi, F. & Oury, J. D., May 1 2019, In : Wiley Interdisciplinary Reviews: Cognitive Science. 10, 3, e1488.

Research output: Contribution to journalReview article

Cognition
History
Psychology
Artificial Intelligence
Automatic Data Processing

Aldehyde Dehydrogenase Inhibitors for Cancer Therapeutics

Dinavahi, S. S., Bazewicz, C. G., Gowda, R. & Robertson, G., Oct 1 2019, In : Trends in Pharmacological Sciences. 40, 10, p. 774-789 16 p.

Research output: Contribution to journalReview article

Aldehyde Dehydrogenase
Neoplasms
Therapeutics
Chemotherapy
Health Services Needs and Demand
6 Citations (Scopus)

Aldehyde dehydrogenase in regulatory T-cell development, immunity and cancer

Bazewicz, C. G., Dinavahi, S. S., Schell, T. D. & Robertson, G. P., Jan 2019, In : Immunology. 156, 1, p. 47-55 9 p.

Research output: Contribution to journalReview article

Aldehyde Dehydrogenase
Regulatory T-Lymphocytes
Immunity
Neoplasms
Immune Tolerance
1 Citation (Scopus)

A review of analytical platforms for accurate bile acid measurement

Dutta, M., Cai, J., Gui, W. & Patterson, A. D., Jul 19 2019, In : Analytical and Bioanalytical Chemistry. 411, 19, p. 4541-4549 9 p.

Research output: Contribution to journalReview article

Bile Acids and Salts
Clinical laboratories
Intestinal Diseases
Molecules
Liquid chromatography
16 Citations (Scopus)

A roadmap for electronic grade 2D materials

Briggs, N., Subramanian, S., Lin, Z., Li, X., Zhang, X., Zhang, K., Xiao, K., Geohegan, D., Wallace, R., Chen, L. Q., Terrones, M., Ebrahimi, A., Das, S., Redwing, J., Hinkle, C., Momeni, K., Van Duin, A., Crespi, V., Kar, S. & Robinson, J. A., Jan 17 2019, In : 2D Materials. 6, 2, 022001.

Research output: Contribution to journalReview article

Open Access
grade
engineering
electronics
molybdenum disulfides
Tungsten

A survey of some tensor analysis techniques for biological systems

Yahyanejad, F., Albert, R. & DasGupta, B., Dec 1 2019, In : Quantitative Biology. 7, 4, p. 266-277 12 p.

Research output: Contribution to journalReview article

Open Access
Biological systems
Biological Systems
Tensors
Tensor
Mathematics
3 Citations (Scopus)

Dose-response and transmission: The nexus between reservoir hosts, nvironment and recipient hosts

Lunn, T. J., Restif, O., Peel, A. J., Munster, V. J., De Wit, E., Sokolow, S., Van Doremalen, N., Hudson, P. & McCallum, H., Sep 30 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1782, 20190016.

Research output: Contribution to journalReview article

disease reservoirs
Zoonoses
Pathogens
dose response
Nipah Virus
1 Citation (Scopus)

Emerging human infectious diseases and the links to global food production

Rohr, J. R., Barrett, C. B., Civitello, D. J., Craft, M. E., Delius, B., DeLeo, G. A., Hudson, P. J., Jouanard, N., Nguyen, K. H., Ostfeld, R. S., Remais, J. V., Riveau, G., Sokolow, S. H. & Tilman, D., Jun 1 2019, In : Nature Sustainability. 2, 6, p. 445-456 12 p.

Research output: Contribution to journalReview article

Emerging Communicable Diseases
infectious disease
food production
infectious diseases
contagious disease

Exceptional responders in oncology: A systematic review and meta-analysis of patient level data

Cummings, M., Lehrer, E. J., Drabick, J., Gusani, N. J., Trifiletti, D. M. & Zaorsky, N., Aug 1 2019, In : American Journal of Clinical Oncology: Cancer Clinical Trials. 42, 8, p. 624-635 12 p.

Research output: Contribution to journalReview article

Meta-Analysis
Survival
Multivariate Analysis
Therapeutics
Confidence Intervals
1 Citation (Scopus)

Flexible and stretchable metal oxide gas sensors for healthcare

Zheng, X. Q. & Cheng, H., Feb 1 2019, In : Science China Technological Sciences. 62, 2, p. 209-223 15 p.

Research output: Contribution to journalReview article

Chemical sensors
Oxides
Metals
Substrates
Sensors
3 Citations (Scopus)

Flexoelectricity in solids: Progress, challenges, and perspectives

Wang, B., Gu, Y., Zhang, S. & Chen, L., Dec 1 2019, In : Progress in Materials Science. 106, 100570.

Research output: Contribution to journalReview article

Polarization
Thermodynamics
Harvesters
Nanoelectronics
Density functional theory
8 Citations (Scopus)

Hydrogen in zirconium alloys: A review

Motta, A. T., Capolungo, L., Chen, L. Q., Cinbiz, M. N., Daymond, M. R., Koss, D. A., Lacroix, E., Pastore, G., Simon, P. C. A., Tonks, M. R., Wirth, B. D. & Zikry, M. A., May 2019, In : Journal of Nuclear Materials. 518, p. 440-460 21 p.

Research output: Contribution to journalReview article

zirconium alloys
Zirconium alloys
Hydrides
hydrides
Hydrogen
1 Citation (Scopus)

Integration of biological systems with electronic-mechanical assemblies

Yi, N., Cui, H., Zhang, L. G. & Cheng, H., Sep 1 2019, In : Acta Biomaterialia. 95, p. 91-111 21 p.

Research output: Contribution to journalReview article

Systems Integration
Biological systems
Equipment and Supplies
Cues
Rehabilitation
3 Citations (Scopus)

Interplay Between the Host, the Human Microbiome, and Drug Metabolism

Nichols, R. G., Peters, J. M. & Patterson, A. D., Jun 11 2019, In : Human genomics. 13, 1, 1 p.

Research output: Contribution to journalReview article

Open Access
Microbiota
Pharmaceutical Preparations
Carboxylic Ester Hydrolases
Bacterial Vaginosis
Prebiotics
13 Citations (Scopus)

Is precipitation a good metric for model performance?

Tapiador, F. J., Roca, R., Del Genio, A., Dewitt, B., Petersen, W. & Zhang, F., Feb 2019, In : Bulletin of the American Meteorological Society. 100, 2, p. 223-233 11 p.

Research output: Contribution to journalReview article

1 Citation (Scopus)

Mechanochemistry in Translation

Leininger, S. E., Narayan, K., Deutsch, C. & O'Brien, E. P., Nov 26 2019, In : Biochemistry. 58, 47, p. 4657-4666 10 p.

Research output: Contribution to journalReview article

Peptidyl Transferases
Protein folding
Protein Folding
Ribosomes
Tunnels
2 Citations (Scopus)

Modelling consortium for chemistry of indoor environments (MOCCIE): Integrating chemical processes from molecular to room scales

Shiraiwa, M., Carslaw, N., Tobias, D. J., Waring, M. S., Rim, D., Morrison, G., Lakey, P. S. J., Kruza, M., Von Domaros, M., Cummings, B. E. & Won, Y., Aug 1 2019, In : Environmental Science: Processes and Impacts. 21, 8, p. 1240-1254 15 p.

Research output: Contribution to journalReview article

Chemical Phenomena
Ozone
chemical process
Aerosols
Gases

Multiscale modeling of shock wave propagation induced by coal and gas outbursts

Zhou, A., Fan, L., Wang, K. & Elsworth, D., May 1 2019, In : Process Safety and Environmental Protection. 125, p. 164-171 8 p.

Research output: Contribution to journalReview article

Coal
shock wave
Shock waves
outburst
Wave propagation
7 Citations (Scopus)

New frontiers for the materials genome initiative

de Pablo, J. J., Jackson, N. E., Webb, M. A., Chen, L. Q., Moore, J. E., Morgan, D., Jacobs, R., Pollock, T., Schlom, D. G., Toberer, E. S., Analytis, J., Dabo, I., DeLongchamp, D. M., Fiete, G. A., Grason, G. M., Hautier, G., Mo, Y., Rajan, K., Reed, E. J., Rodriguez, E. & 4 others, Stevanovic, V., Suntivich, J., Thornton, K. & Zhao, J. C., Dec 1 2019, In : npj Computational Materials. 5, 1, 41.

Research output: Contribution to journalReview article

Open Access
Genome
Genes
Computation theory
Infrastructure
Innovation

New opportunities in transmission electron microscopy of polymers

Kuei, B., Aplan, M. P., Litofsky, J. H. & Gomez, E. D., Jan 1 2019, (Accepted/In press) In : Materials Science and Engineering R: Reports. 100516.

Research output: Contribution to journalReview article

Polymers
Transmission electron microscopy
Imaging techniques
Focused ion beams
Electron microscopy

Observations of near-surface vertical wind profiles and vertical momentum fluxes from VORTEX-SE 2017: Comparisons to Monin–Obukhov similarity theory

Markowski, P. M., Lis, N. T., Turner, D. D., Lee, T. R. & Buban, M. S., Jan 1 2019, In : Monthly Weather Review. 147, 10, p. 3811-3824 14 p.

Research output: Contribution to journalReview article

Open Access
wind profile
momentum
boundary condition
Doppler lidar
wind shear
Open Access
Human Herpesvirus 1
Virus Diseases
Alzheimer Disease
Viruses
Infection
1 Citation (Scopus)

Perspective: Voltage control of magnetization in multiferroic heterostructures

Hu, J. M., Nan, C. W. & Chen, L. Q., Jul 1 2019, In : National Science Review. 6, 4, p. 621-624 4 p.

Research output: Contribution to journalReview article

Open Access
10 Citations (Scopus)

Physical Activity, Cognition, and Brain Outcomes: A Review of the 2018 Physical Activity Guidelines

Erickson, K. I., Hillman, C., Stillman, C. M., Ballard, R. M., Bloodgood, B., Conroy, D. E., Macko, R., Marquez, D. X., Petruzzello, S. J. & Powell, K. E., Jun 1 2019, In : Medicine and science in sports and exercise. 51, 6, p. 1242-1251 10 p.

Research output: Contribution to journalReview article

Cognition
Guidelines
Brain
Population
Neuropsychological Tests
3 Citations (Scopus)
Open Access
regulators
cellulose
mechanics
cell walls
cell wall components
4 Citations (Scopus)

Reading comprehension in L1 and L2: An integrative approach

Li, P. & Clariana, R., May 1 2019, In : Journal of Neurolinguistics. 50, p. 94-105 12 p.

Research output: Contribution to journalReview article

Reading
comprehension
Language
language
Individuality
1 Citation (Scopus)

Recent Progress in Active Optical Metasurfaces

Kang, L., Jenkins, R. P. & Werner, D. H., Jul 18 2019, In : Advanced Optical Materials. 7, 14, 1801813.

Research output: Contribution to journalReview article

Tuning
tuning
nanofabrication
reviewing
Metamaterials
1 Citation (Scopus)

Recent progress on first-principles simulations of voltammograms

Li, Y. & Janik, M. J., Apr 1 2019, In : Current Opinion in Electrochemistry. 14, p. 124-132 9 p.

Research output: Contribution to journalReview article

Adsorption
Hydroxyl Radical
Anions
Hydrogen
Negative ions
1 Citation (Scopus)

Research questions to facilitate the future development of European long-term ecosystem research infrastructures: A horizon scanning exercise

Musche, M., Adamescu, M., Angelstam, P., Bacher, S., Bäck, J., Buss, H. L., Duffy, C., Flaim, G., Gaillardet, J., Giannakis, G. V., Haase, P., Halada, L., Kissling, W. D., Lundin, L., Matteucci, G., Meesenburg, H., Monteith, D., Nikolaidis, N. P., Pipan, T., Pyšek, P. & 8 others, Rowe, E. C., Roy, D. B., Sier, A., Tappeiner, U., Vilà, M., White, T., Zobel, M. & Klotz, S., Nov 15 2019, In : Journal of Environmental Management. 250, 109479.

Research output: Contribution to journalReview article

Open Access
Ecosystems
infrastructure
Scanning
ecosystem service
ecosystem
9 Citations (Scopus)

Review of numerical optimization techniques for meta-device design [Invited]

Campbell, S. D., Sell, D., Jenkins, R. P., Whiting, E. B., Fan, J. A. & Werner, D. H., Apr 1 2019, In : Optical Materials Express. 9, 4, 351481.

Research output: Contribution to journalReview article

Open Access
Shape optimization
Multiobjective optimization
Direction compound
Deep learning
11 Citations (Scopus)

Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture

Lynch, J. P., Jul 2019, In : New Phytologist. 223, 2, p. 548-564 17 p.

Research output: Contribution to journalReview article

Open Access
Agriculture
Soil
agriculture
ideotypes
Breeding
2 Citations (Scopus)

Scaling up: How computational models can propel bilingualism research forward

Li, P. & Grant, A., Aug 1 2019, In : Bilingualism. 22, 4, p. 682-684 3 p.

Research output: Contribution to journalReview article

multilingualism
scaling
Computational Model
Scaling
Bilingualism
Chromatin
Transcription Factors
Histone Code
DNA-Binding Proteins
Histones

Stephen elliott fienberg 1942-2016, founding editor of the annual review of statistics and its application

Carriquiry, A. L., Reid, N. & Slavkovic, A. B., Mar 7 2019, In : Annual Review of Statistics and Its Application. 6, p. 1-18 18 p.

Research output: Contribution to journalReview article

Open Access
Annual
Statistics
Sweeping
Leadership
Categorization
1 Citation (Scopus)

Stereotactic ablative radiation therapy for oligometastatic renal cell carcinoma (SABR ORCA): a meta-analysis of 28 studies

Zaorsky, N., Lehrer, E. J., Kothari, G., Louie, A. V. & Siva, S., Jan 1 2019, In : European Urology Oncology.

Research output: Contribution to journalReview article

Open Access
Renal Cell Carcinoma
Meta-Analysis
Radiotherapy
Kidney
2 Citations (Scopus)

The Emerging Role of Stereotactic Ablative Radiotherapy for Primary Renal Cell Carcinoma: A Systematic Review and Meta-Analysis

Correa, R. J. M., Louie, A. V., Zaorsky, N. G., Lehrer, E. J., Ellis, R., Ponsky, L., Kaplan, I., Mahadevan, A., Chu, W., Swaminath, A., Hannan, R., Onishi, H., Teh, B. S., Muacevic, A., Lo, S. S., Staehler, M. & Siva, S., Nov 2019, In : European Urology Focus. 5, 6, p. 958-969 12 p.

Research output: Contribution to journalReview article

Renal Cell Carcinoma
Meta-Analysis
Radiotherapy
Kidney
Confidence Intervals
5 Citations (Scopus)

The extratropical transition of tropical cyclones. Part II: Interaction with the midlatitude flow, downstream impacts, and implications for predictability

Keller, J. H., Grams, C. M., Riemer, M., Archambault, H. M., Bosart, L., Doyle, J. D., Evans, J., Galarneau, T. J., Griffin, K., Harr, P. A., Kitabatake, N., McTaggart-Cowan, R., Pantillon, F., Quinting, J. F., Reynolds, C. A., Ritchie, E. A., Torn, R. D. & Zhang, F., Apr 1 2019, In : Monthly Weather Review. 147, 4, p. 1077-1106 30 p.

Research output: Contribution to journalReview article

tropical cyclone
cyclone
weather
diabatic process
Rossby wave
2 Citations (Scopus)

The Food-Energy-Water Nexus: Security, Sustainability, and Systems Perspectives

Grady, C., Blumsack, S. A., Mejia, A. I. & Peters, C. A., Jul 1 2019, In : Environmental Engineering Science. 36, 7, p. 761-762 2 p.

Research output: Contribution to journalReview article

Environmental engineering
Sustainable development
sustainability
food
Water
5 Citations (Scopus)

The Sloan Digital Sky Survey Reverberation Mapping Project: Systematic Investigations of Short-timescale C IV Broad Absorption Line Variability

Hemler, Z. S., Grier, C. J., Brandt, W. N., Hall, P. B., Horne, K., Shen, Y., Trump, J. R., Schneider, D. P., Vivek, M., Bizyaev, D., Oravetz, A., Oravetz, D. & Pan, K., Feb 10 2019, In : Astrophysical Journal. 872, 1, 21.

Research output: Contribution to journalReview article

reverberation
quasars
timescale
time measurement
ionization
1 Citation (Scopus)

The stomatal flexoskeleton: How the biomechanics of guard cell walls animate an elastic pressure vessel

Yi, H., Chen, Y., Wang, J. Z., Puri, V. M. & Anderson, C. T., Jan 1 2019, In : Journal of experimental botany. 70, 14, p. 3561-3571 11 p.

Research output: Contribution to journalReview article

guard cells
Biomechanical Phenomena
Cell Wall
cell walls
Pressure

Three Principles to Use in Streamlining Water Quality Research through Data Uniformity

Shaughnessy, A. R., Wen, T., Niu, X. & Brantley, S. L., Dec 3 2019, In : Environmental Science and Technology. 53, 23, p. 13549-13550 2 p.

Research output: Contribution to journalReview article

Open Access
2 Citations (Scopus)

Total skin electron beam therapy in mycosis fungoides—a shift towards lower dose?

Chowdhary, M., Song, A., Zaorsky, N. G. & Shi, W., Feb 2019, In : Chinese clinical oncology. 8, 1, 9.

Research output: Contribution to journalReview article

Mycoses
Electrons
Skin
Mycosis Fungoides
Therapeutics
9 Citations (Scopus)

Treatment of brain metastases with stereotactic radiosurgery and immune checkpoint inhibitors: An international meta-analysis of individual patient data

Lehrer, E. J., Peterson, J., Brown, P. D., Sheehan, J. P., Quiñones-Hinojosa, A., Zaorsky, N. G. & Trifiletti, D. M., Jan 2019, In : Radiotherapy and Oncology. 130, p. 104-112 9 p.

Research output: Contribution to journalReview article

Radiosurgery
Meta-Analysis
Neoplasm Metastasis
Brain
Therapeutics
1 Citation (Scopus)

Understanding the links between cardiovascular disease and Parkinson's disease

Potashkin, J., Huang, X., Becker, C., Chen, H., Foltynie, T. & Marras, C., Jan 1 2019, (Accepted/In press) In : Movement Disorders.

Research output: Contribution to journalReview article

Parkinson Disease
Cardiovascular Diseases
Coffee
Lipid Metabolism
LDL Cholesterol
Virus Diseases
Simplexvirus
Infection
Central Nervous System Infections
Aptitude