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Research Output 1967 2020

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Letter
2019
7 Citations (Scopus)

A magnetar-powered X-ray transient as the aftermath of a binary neutron-star merger

Xue, Y. Q., Zheng, X. C., Li, Y., Brandt, W. N., Zhang, B., Luo, B., Zhang, B. B., Bauer, F. E., Sun, H., Lehmer, B. D., Wu, X. F., Yang, G., Kong, X., Li, J. Y., Sun, M. Y., Wang, J. X. & Vito, F., Apr 11 2019, In : Nature. 568, 7751, p. 198-201 4 p.

Research output: Contribution to journalLetter

Galaxies
Neutrons
X-Rays
Magnetic Fields
Light
8 Citations (Scopus)

A piezoelectric, strain-controlled antiferromagnetic memory insensitive to magnetic fields

Yan, H., Feng, Z., Shang, S., Wang, X., Hu, Z., Wang, J., Zhu, Z., Wang, H., Chen, Z., Hua, H., Lu, W., Wang, J., Qin, P., Guo, H., Zhou, X., Leng, Z., Liu, Z., Jiang, C., Coey, M. & Liu, Z., Feb 1 2019, In : Nature Nanotechnology. 14, 2, p. 131-136 6 p.

Research output: Contribution to journalLetter

Magnetic fields
Data storage equipment
magnetic fields
Tunnel junctions
tunnel junctions

Effects of pesticides on exposure and susceptibility to parasites can be generalised to pesticide class and type in aquatic communities

Rumschlag, S. L., Halstead, N. T., Hoverman, J. T., Raffel, T. R., Carrick, H. J., Hudson, P. J. & Rohr, J. R., Jun 1 2019, In : Ecology Letters. 22, 6, p. 962-972 11 p.

Research output: Contribution to journalLetter

aquatic communities
aquatic community
parasite
pesticides
pesticide
2 Citations (Scopus)

Gut microbiota–bile acid–interleukin-22 axis orchestrates polycystic ovary syndrome

Qi, X., Yun, C., Sun, L., Xia, J., Wu, Q., Wang, Y., Wang, L., Zhang, Y., Liang, X., Wang, L., Gonzalez, F. J., Patterson, A. D., Liu, H., Mu, L., Zhou, Z., Zhao, Y., Li, R., Liu, P., Zhong, C., Pang, Y. & 2 others, Jiang, C. & Qiao, J., Aug 1 2019, In : Nature Medicine. 25, 8, p. 1225-1233 9 p.

Research output: Contribution to journalLetter

Polycystic Ovary Syndrome
Glycodeoxycholic Acid
Insulin
Bile Acids and Salts
Metabolism
3 Citations (Scopus)

Observation of room-temperature polar skyrmions

Das, S., Tang, Y. L., Hong, Z., Gonçalves, M. A. P., McCarter, M. R., Klewe, C., Nguyen, K. X., Gómez-Ortiz, F., Shafer, P., Arenholz, E., Stoica, V. A., Hsu, S. L., Wang, B., Ophus, C., Liu, J. F., Nelson, C. T., Saremi, S., Prasad, B., Mei, A. B., Schlom, D. G. & 7 others, Íñiguez, J., García-Fernández, P., Muller, D. A., Chen, L., Junquera, J., Martin, L. W. & Ramesh, R., Apr 18 2019, In : Nature. 568, 7752, p. 368-372 5 p.

Research output: Contribution to journalLetter

Scanning Transmission Electron Microscopy
Physics
Circular Dichroism
X-Ray Diffraction
Observation

Plasticity of the genomic haplotype of Synechococcus elongatus leads to rapid strain adaptation under laboratory conditions

Ungerer, J., Wendt, K. E., Hendry, J. I., Maranas, C. D. & Pakrasi, H. B., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 10, p. 3946-3947 2 p.

Research output: Contribution to journalLetter

Prostatectomy
Urinary Bladder Neoplasms
Prostatic Neoplasms
Radiotherapy
Population
Shale
ground water
flux (rate)
Groundwater
shale

Response to critique of article “Calibration of Safecast dose rate measurements”

Cervone, G. & Hultquist, C., Feb 1 2019, In : Journal of Environmental Radioactivity. 197, 1 p.

Research output: Contribution to journalLetter

Calibration
calibration
dose
rate
2 Citations (Scopus)

Robust abatement pathways to tolerable climate futures require immediate global action

Lamontagne, J. R., Reed, P. M., Marangoni, G., Keller, K. & Garner, G. G., Apr 1 2019, In : Nature Climate Change. 9, 4, p. 290-294 5 p.

Research output: Contribution to journalLetter

climate
warming
uncertainty
economics
economic conditions

Selection on Aedes aegypti alters Wolbachia-mediated dengue virus blocking and fitness

Ford, S. A., Allen, S. L., Ohm, J. R., Sigle, L. T., Sebastian, A., Albert, I., Chenoweth, S. F. & McGraw, E. A., Jan 1 2019, (Accepted/In press) In : Nature Microbiology.

Research output: Contribution to journalLetter

Wolbachia
Dengue Virus
Aedes
Culicidae
Dengue
9 Citations (Scopus)

Spatially resolved steady-state negative capacitance

Yadav, A. K., Nguyen, K. X., Hong, Z., García-Fernández, P., Aguado-Puente, P., Nelson, C. T., Das, S., Prasad, B., Kwon, D., Cheema, S., Khan, A. I., Hu, C., Íñiguez, J., Junquera, J., Chen, L., Muller, D. A., Ramesh, R. & Salahuddin, S., Jan 24 2019, In : Nature. 565, 7740, p. 468-471 4 p.

Research output: Contribution to journalLetter

Equipment Design
Thermodynamics
Electron Microscopy

Thyroid cancer overdiagnosis and malpractice climate

Warrick, J. & Lengerich, E., Apr 1 2019, In : Archives of Pathology and Laboratory Medicine. 143, 4, p. 414-415 2 p.

Research output: Contribution to journalLetter

Open Access
Malpractice
Climate
Thyroid Neoplasms
Medical Overuse
2018
4 Citations (Scopus)

A comparison of tanning habits among gym tanners and other tanners

Pagoto, S. L., Nahar, V. K., Frisard, C., Conroy, D. E., Lemon, S. C., Oleski, J. & Hillhouse, J., Sep 1 2018, In : JAMA Dermatology. 154, 9, p. 1090-1091 2 p.

Research output: Contribution to journalLetter

Tanning
Habits
3 Citations (Scopus)

An empirical evaluation of rule extraction from recurrent neural networks

Wang, Q., Zhang, K., Ororbia, A. G., Xing, X., Liu, X. & Giles, C. L., Sep 1 2018, In : Neural Computation. 30, 9, p. 2568-2591 24 p.

Research output: Contribution to journalLetter

Nonlinear Dynamics
Learning
Evaluation
Recurrent Neural Networks
4 Citations (Scopus)

Anisotropic polarization-induced conductance at a ferroelectric–insulator interface

Zhang, Y., Lu, H., Xie, L., Yan, X., Paudel, T. R., Kim, J., Cheng, X., Wang, H., Heikes, C., Li, L., Xu, M., Schlom, D. G., Chen, L., Wu, R., Tsymbal, E. Y., Gruverman, A. & Pan, X., Dec 1 2018, In : Nature nanotechnology. 13, 12, p. 1132-1136 5 p.

Research output: Contribution to journalLetter

Two dimensional electron gas
Ferroelectric materials
Polarization
polarization
insulators
9 Citations (Scopus)

Apochromatic singlets enabled by metasurface-augmented GRIN lenses

Nagar, J., Campbell, S. & Werner, D. H., Feb 20 2018, In : Optica. 5, 2, p. 99-102 4 p., 2334-2536/18/020099-04.

Research output: Contribution to journalLetter

Imaging systems
Lenses
lenses
gradients
Ray tracing

Gender differences in the use of atypical antipsychotic medications for ICU delirium

Karamchandani, K., Schoaps, R. S., Printz, J., Kowaleski, J. & Carr, Z., Sep 21 2018, In : Critical Care. 22, 1, 220.

Research output: Contribution to journalLetter

Delirium
Antipsychotic Agents
Artificial Respiration
Blood Pressure
1 Citation (Scopus)

Regarding global pediatric surgery training opportunities

Baird, R., Pandya, K., Lal, D. R., Calkins, C. M., Oldham, K. T., Tsai, A., Naik-Mathuria, B., St-Louis, E., Luc, M. K., LaRusso, K., Petroze, R., Lofberg, K. M., Biller, C. K., Villalona, G. A., Gourlay, D. M., Klein, M., DeUgarte, D., Cleary, M., Berdan, E. A., Siddiqui, S. & 13 others, Lo, A., Langer, M., Duffy, D., Blair, G., Beres, A., Laberge, J. M., Radulescu, A., Holterman, A. X., Hoover, J. D., Fitzgerald, T., Ganey, M., Krishnaswami, S. & Ozgediz, D., Jun 1 2018, In : Journal of pediatric surgery. 53, 6, p. 1256-1258 3 p.

Research output: Contribution to journalLetter

Pediatrics
2017
8 Citations (Scopus)

Age-specific infectious period shapes dynamics of pneumonia in bighorn sheep

Plowright, R. K., Manlove, K. R., Besser, T. E., Páez, D. J., Andrews, K. R., Matthews, P. E., Waits, L. P., Hudson, P. J. & Cassirer, E. F., Oct 1 2017, In : Ecology Letters. 20, 10, p. 1325-1336 12 p.

Research output: Contribution to journalLetter

Ovis canadensis
pneumonia
sheep
infection
Mycoplasma ovipneumoniae
1 Citation (Scopus)

Reply to comment by Añel on “Most computational hydrology is not reproducible, so is it really science?”

Hutton, C., Wagener, T., Freer, J., Han, D., Duffy, C. J. & Arheimer, B., Mar 1 2017, In : Water Resources Research. 53, 3, p. 2575-2576 2 p.

Research output: Contribution to journalLetter

hydrology
cultural change
software
experiment
code
2 Citations (Scopus)

Reply to comment by Melsen et al. on “Most computational hydrology is not reproducible, so is it really science?”

Hutton, C., Wagener, T., Freer, J., Han, D., Duffy, C. J. & Arheimer, B., Mar 1 2017, In : Water Resources Research. 53, 3, p. 2570-2571 2 p.

Research output: Contribution to journalLetter

hydrology
experiment
code
freedom
science
1 Citation (Scopus)

Reply to "comments on 'revisiting the relationship between eyewall contraction and intensification'"

Stern, D. P., Vigh, J. L., Nolan, D. S. & Zhang, F., Dec 1 2017, In : Journal of the Atmospheric Sciences. 74, 12, p. 4275-4286 12 p.

Research output: Contribution to journalLetter

contraction
wind profile
tropical cyclone
kinematics
4 Citations (Scopus)
pollutant source
wind field
atmospheric pollution
method
need
2016
1 Citation (Scopus)

Moving forward with fine-root definitions and research

McCormack, M. L., Iversen, C. M. & Eissenstat, D., Oct 1 2016, In : The New phytologist. 212, 2, 1 p.

Research output: Contribution to journalLetter

mycorrhizal fungi
Ecosystem
ecosystems
Research
fine roots

Overweight and obesity among Major League Baseball players: 1871–2015

Conroy, D. E., Wolin, K. Y. & Carnethon, M. R., Sep 1 2016, In : Obesity Research and Clinical Practice. 10, 5, p. 610-612 3 p.

Research output: Contribution to journalLetter

Baseball
Obesity
Health
Weights and Measures
Athletes

Pyrogeography: Build social costs into wildfire risk

Smithwick, E. A. H., Jul 13 2016, In : Nature. 535, 7611, 1 p.

Research output: Contribution to journalLetter

Environment Design
Disaster Planning
Geographic Mapping
Disasters
Costs and Cost Analysis
3 Citations (Scopus)

Wrist Accelerometry in the Health, Functional, and Social Assessment of Older Adults

Huisingh-Scheetz, M., Kocherginsky, M., Dugas, L., Payne, C., Dale, W., Conroy, D. E. & Waite, L., Apr 1 2016, In : Journal of the American Geriatrics Society. 64, 4, p. 889-891 3 p.

Research output: Contribution to journalLetter

2015
3 Citations (Scopus)

Anthropological Genetics

Kitchen, A., Non, A. L., Gravlee, C. C., Mulligan, C. J., Warinner, C., Lewis, C. M., Bankoff, R. J., Randrianatoandro, H. D. D., Perry, G. H., Malhi, R. S., Bader, A. C. & Raff, J., Dec 1 2015, In : American Anthropologist. 117, 4, p. 736-737 2 p.

Research output: Contribution to journalLetter

9 Citations (Scopus)

A roadmap for OH reactivity research

Williams, J. & Brune, W. H., Apr 1 2015, In : Atmospheric Environment. 106, p. 371-372 2 p.

Research output: Contribution to journalLetter

1 Citation (Scopus)

A Stable Isotope Data Repository as Part of Neotoma, a Paleoecological Database

Pilaar Birch, S. E. & Graham, R. W., Sep 30 2015, In : BioScience. 65, 10, p. 953 1 p.

Research output: Contribution to journalLetter

Sigmodontinae
Neotoma
Isotopes
stable isotopes
Databases

Comments on "Observations of wall cloud formation in supercell thunderstorms during VORTEX2"

Markowski, P., Richardson, Y. P., Kumjian, M. R., Anderson-Frey, A., Jimenez, G., Katona, B., Klees, A., Schrom, R. & Tobin, D., 2015, In : Monthly Weather Review. 143, 10, p. 4278-4281 4 p.

Research output: Contribution to journalLetter

supercell
thunderstorm
21 Citations (Scopus)

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M. T., Fong, S. S., Hatzimanikatis, V., Holder, A., Hucka, M., Hyduke, D., Jamshidi, N., Lee, S. Y., Le Novère, N., Lerman, J. A., Lewis, N. E. & 20 others, Ma, D., Mahadevan, R., Maranas, C. D., Nagarajan, H., Navid, A., Nielsen, J., Nielsen, L. K., Nogales, J., Noronha, A., Pal, C., Palsson, B. O., Papin, J. A., Patil, K. R., Price, N. D., Reed, J. L., Saunders, M., Senger, R. S., Sonnenschein, N., Sun, Y. & Thiele, I., Oct 1 2015, In : Molecular Systems Biology. 11, 10, 831.

Research output: Contribution to journalLetter

Biological Models
Thermodynamics
thermodynamics
Genome
Genes
2 Citations (Scopus)

International Year of Soils: United Nations highlights soil crisis

Lin, H. & Horn, R., Jan 29 2015, In : Nature. 517, 7536, 1 p.

Research output: Contribution to journalLetter

International Cooperation
United Nations
Water Supply
Conservation of Natural Resources
Agriculture
3 Citations (Scopus)
Insulin Infusion Systems
Postprandial Period
Dietary Carbohydrates
Insulin
Model predictive control
1 Citation (Scopus)

Primate Conservation Genomics and Paleogenomics

Bankoff, R. J., Randrianatoandro, H. D. D. & Perry, G. H., Dec 1 2015, In : American Anthropologist. 117, 4, p. 742-743 2 p.

Research output: Contribution to journalLetter

conservation
Conservation
Primates
2014
76 Citations (Scopus)

Dissemination of scientific software with Galaxy ToolShed

Blankenberg, D. J., Von Kuster, G., Bouvier, E., Baker, D., Afgan, E., Stoler, N., Taylor, J., Nekrutenko, A., Clements, D., Coraor, N., Eberhard, C., Francheteau, D., Goecks, J., Guerler, S., Jackson, J. L., Cooke, I., Johnson, J., Kirton, E., Cock, P., Chapman, B. & 2 others, Grüning, B. & Lazarus, R., Feb 20 2014, In : Genome biology. 15, 2, 403.

Research output: Contribution to journalLetter

Galaxies
Software
software
freedom
analysis

Grocery stores and obesity: the authors reply

Cummins, S., Flint, E. & Matthews, S. A., May 1 2014, In : Health affairs (Project Hope). 33, 5, p. 907 1 p.

Research output: Contribution to journalLetter

Food Supply
Feeding Behavior
Health Promotion
Obesity
4 Citations (Scopus)

Reduced yield stress for zirconium exposed to iodine: reactive force field simulation

Rossi, M. L., Taylor, C. D. & Van Duin, A., Dec 1 2014, In : Advanced Modeling and Simulation in Engineering Sciences. 1, 1, 19.

Research output: Contribution to journalLetter

Yield Stress
Force Field
Cracking
Iodine
Zirconium
4 Citations (Scopus)

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease

Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R. & 10 others, Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J., Weng, Z., White, K. P. & Hardison, R. C., Aug 19 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 33

Research output: Contribution to journalLetter

Response

Jones, B. C., Huang, X., Mailman, R., Lu, L. & Williams, R. W., 2014, In : Journal of Biochemical and Molecular Toxicology. 28, 7, p. 291 1 p.

Research output: Contribution to journalLetter

Neurotoxicity Syndromes
Gene-Environment Interaction
Environmental Pollutants
Paraquat
Herbicides
31 Citations (Scopus)

Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil

Malaspinas, A. S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L. F., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y. & 20 others, Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D. J. & Willerslev, E., Nov 3 2014, In : Current Biology. 24, 21, p. R1035-R1037

Research output: Contribution to journalLetter

Human Genome
Skull
Brazil
ancestry
Genes
2013
43 Citations (Scopus)

Alternating direction methods for latent variable gaussian graphical model selection

Ma, S., Xue, L. & Zou, H., Aug 7 2013, In : Neural Computation. 25, 8, p. 2172-2198 27 p.

Research output: Contribution to journalLetter

Synthetic Genes
Direction compound
Model Selection
Consensus
Gene Expression
10 Citations (Scopus)

Open data: Crediting a culture of cooperation

Bolukbasi, B., Berente, N., Cutcher-Gershenfeld, J., Dechurch, L., Flint, C., Haberman, M., King, J. L., Knight, E., Lawrence, B., Masella, E., McElroy, C., Mittleman, B., Nolan, M., Radik, M., Shin, N., Thompson, C. A., Winter, S., Zaslavsky, I., Allison, M. L., Arctur, D. & 24 others, Arrigo, J., Aufdenkampe, A. K., Bass, J., Crowell, J., Daniels, M., Diggs, S., Duffy, C. J., Gil, Y., Gomez, B., Graves, S., Hazen, R., Hsu, L., Kinkade, D., Lehnert, K., Marone, C. J., Middleton, D., Noren, A., Pearthree, G., Ramamurthy, M., Robinson, E., Percivall, G., Richard, S., Suarez, C. & Walker, D., Jan 1 2013, In : Science. 342, 6162, p. 1041-1042 2 p.

Research output: Contribution to journalLetter

2012
259 Citations (Scopus)

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R. C., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E. & 66 others, Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller Capone, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D. J., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F. & Adams, L. B., Aug 13 2012, In : Genome biology. 13, 8, 418.

Research output: Contribution to journalLetter

Encyclopedias
DNA
mice
Genomics
genomics

Authors' response

Buxton, O. M. & Okechukwu, C. A., Nov 1 2012, In : Journal of Occupational and Environmental Medicine. 54, 11, p. 1322-1323 2 p.

Research output: Contribution to journalLetter

24 Citations (Scopus)

NGS analyses by visualization with Trackster

Goecks, J., Coraor, N., Nekrutenko, A. & Taylor, J., Nov 1 2012, In : Nature Biotechnology. 30, 11, p. 1036-1039 4 p.

Research output: Contribution to journalLetter

User-Computer Interface
Computer Graphics
Genetic Databases
Data Mining
Chromosome Mapping
2011
81 Citations (Scopus)

Harnessing cloud computing with Galaxy Cloud

Afgan, E., Baker, D., Coraor, N., Goto, H., Paul, I., Makova, K. D., Nekrutenko, A. & Taylor, J., Nov 1 2011, In : Nature Biotechnology. 29, 11, p. 972-974 3 p.

Research output: Contribution to journalLetter

Galaxies
Cloud computing
Mitochondrial DNA
Internet
13 Citations (Scopus)

Steel Surface Passivation at a Typical Ambient Condition: Atomistic Modeling and X-ray Diffraction/Reflectivity Analyses

Pan, T. & Van Duin, A., Dec 1 2011, In : Electrocatalysis. 2, 4, p. 307-316 10 p.

Research output: Contribution to journalLetter

Passivation
X ray diffraction
Steel