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Research Output 1975 2019

2002
1191 Citations (Scopus)

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

Okazaki, Y., Furuno, M., Kasukawa, T., Adachi, J., Bono, H., Kondo, S., Nikaido, I., Osato, N., Saito, R., Suzuki, H., Yamanaka, I., Kiyosawa, H., Yagi, K., Tomaru, Y., Hasegawa, Y., Nogami, A., Schönbach, C., Gojobori, T., Baldarelli, R., Hill, D. P. & 117 others, Bult, C., Hume, D. A., Quackenbush, J., Schriml, L. M., Kanapin, A., Matsuda, H., Batalov, S., Beisel, K. W., Blake, J. A., Bradt, D., Brusic, V., Chothia, C., Corbani, L. E., Cousins, S., Dalla, E., Dragani, T. A., Fletcher, C. F., Forrest, A., Frazer, K. S., Gaasterland, T., Gariboldi, M., Gissi, C., Godzik, A., Gough, J., Grimmond, S., Gustincich, S., Hirokawa, N., Jackson, I. J., Jarvis, E. D., Kanai, A., Kawaji, H., Kawasawa, Y., Kedzierski, R. M., King, B. L., Konagaya, A., Kurochkin, I. V., Lee, Y., Lenhard, B., Lyons, P. A., Maglott, D. R., Maltais, L., Marchionni, L., McKenzie, L., Miki, H., Nagashima, T., Numata, K., Okido, T., Pavan, W. J., Pertea, G., Pesole, G., Petrovsky, N., Pillai, R., Pontius, J. U., Qi, D., Ramachandran, S., Ravasi, T., Reed, J. C., Reed, D. J., Reid, J., Ring, B. Z., Ringwald, M., Sandelin, A., Schneider, C., Semple, C. A. M., Setou, M., Shimada, K., Sultana, R., Takenaka, Y., Taylor, M. S., Teasdale, R. D., Tomita, M., Verardo, R., Wagner, L., Wahlestedt, C., Wang, Y., Watanabe, Y., Wells, C., Wilming, L. G., Wynshaw-Boris, A., Yanagisawa, M., Yang, I., Yang, L., Yuan, Z., Zavolan, M., Zhu, Y., Zimmer, A., Carninci, P., Hayatsu, N., Hirozane-Kishikawa, T., Konno, H., Nakamura, M., Sakazume, N., Sato, K., Shiraki, T., Waki, K., Kawai, J., Aizawa, K., Arakawa, T., Fukuda, S., Hara, A., Hashizume, W., Imotani, K., Ishii, Y., Itoh, M., Kagawa, I., Miyazaki, A., Sakai, K., Sasaki, D., Shibata, K., Shinagawa, A., Yasunishi, A., Yoshino, M., Waterston, R., Lander, E. S., Rogers, J., Birney, E. & Hayashizaki, Y., Dec 5 2002, In : Nature. 420, 6915, p. 563-573 11 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Complementary DNA
Transcriptome
Clone Cells
Untranslated RNA
202 Citations (Scopus)

A point mutation that confers constitutive activity to CXCR4 reveals that T140 is an inverse agonist and that AMD3100 and ALX40-4C are weak partial agonists

Zhang, W. B., Navenot, J. M., Haribabu, B., Tamamuraz, H., Hiramatu, K., Omagari, A., Pei, G., Manfredi, J. P., Fujii, N., Broach, J. & Peiper, S. C., Jul 5 2002, In : Journal of Biological Chemistry. 277, 27, p. 24515-24521 7 p.

Research output: Contribution to journalArticle

Point Mutation
Viperidae
Computer aided manufacturing
Pheromone Receptors
Yeasts
15 Citations (Scopus)

Directional bias during mating type switching in Saccharomyces is independent of chromosomal architecture

Simon, P., Houston, P. & Broach, J., May 1 2002, In : EMBO Journal. 21, 9, p. 2282-2291 10 p.

Research output: Contribution to journalArticle

Saccharomyces
Chromosomes
Gene Conversion
Green Fluorescent Proteins
Haploidy
2003
27 Citations (Scopus)

Analysis of the mouse transcriptome for genes involved in the function of the nervous system

Gustincich, S., Batalov, S., Beisel, K. W., Bono, H., Carninci, P., Fletcher, C. F., Grimmond, S., Hirokawa, N., Jarvis, E. D., Jegla, T., Kawasawa, Y., LeMieux, J., Miki, H., Raviola, E., Teasdale, R. D., Tominaga, N., Yagi, K., Zimmer, A., Arakawa, T., Waki, K. & 3 others, Kawai, J., Hayashizaki, Y. & Okazaki, Y., Jun 1 2003, In : Genome research. 13, 6 B, p. 1395-1401 7 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Nervous System
Brain
Genes
Connexins
31 Citations (Scopus)

Constitutive activation of CCR5 and CCR2 induced by conformational changes in the conserved TXP motif in transmembrane helix 2

Arias, D. A., Navenot, J. M., Zhang, W. B., Broach, J. & Peiper, S. C., Sep 19 2003, In : Journal of Biological Chemistry. 278, 38, p. 36513-36521 9 p.

Research output: Contribution to journalArticle

Chemokine CCL5
Yeasts
CCR2 Receptors
Chemical activation
Yeast
24 Citations (Scopus)

G protein-coupled receptor genes in the FANTOM2 database

Kawasawa, Y., McKenzie, L. M., Hill, D. P., Bono, H., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y. & Yanagisawa, M., Jun 1 2003, In : Genome research. 13, 6 B, p. 1466-1477 12 p.

Research output: Contribution to journalArticle

G-Protein-Coupled Receptors
Complementary DNA
Databases
Genes
Physiological Phenomena
8 Citations (Scopus)

Making good neighbors: The right fence for the right job

Schedl, P. & Broach, J., Apr 1 2003, In : Nature Structural Biology. 10, 4, p. 241-243 3 p.

Research output: Contribution to journalShort survey

Fences
Heterochromatin
170 Citations (Scopus)

Molecular-size reduction of a potent CXCR4-chemokine antagonist using orthogonal combination of conformation- and sequence-based libraries

Fujii, N., Oishi, S., Hiramatsu, K., Araki, T., Ueda, S., Tamamura, H., Otaka, A., Kusano, S., Terakubo, S., Nakashima, H., Broach, J., Trent, J. O., Wang, Z. X. & Peiper, S. C., Jul 28 2003, In : Angewandte Chemie - International Edition. 42, 28, p. 3251-3253 3 p.

Research output: Contribution to journalArticle

Lead compounds
Chemokines
Peptides
Conformations
4-fluorobenzoyl-TN-14003
127 Citations (Scopus)

Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast

Düvel, K., Santhanam, A., Garrett, S., Schneper, L. & Broach, J., Jun 1 2003, In : Molecular cell. 11, 6, p. 1467-1478 12 p.

Research output: Contribution to journalArticle

Sirolimus
Yeasts
Phosphoprotein Phosphatases
Genes
Ribosomal Proteins
25 Citations (Scopus)

Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression

Yu, Q., Qiu, R., Foland, T. B., Griesen, D., Galloway, C. S., Chiu, Y. H., Sandmeier, J., Broach, J. R. & Bi, X., Feb 15 2003, In : Nucleic acids research. 31, 4, p. 1224-1233 10 p.

Research output: Contribution to journalReview article

Insulator Elements
Chromatin
Gene Expression
Ribosomes
Transcriptional Activation
13 Citations (Scopus)

Theoretical and Computational Studies of the Glucose Signaling Pathways in Yeast Using Global Gene Expression Data

Lin, X., Floudas, C. A., Wang, Y. & Broach, J., Dec 30 2003, In : Biotechnology and bioengineering. 84, 7, p. 864-886 23 p.

Research output: Contribution to journalReview article

Gene expression
Yeast
Glucose
Theoretical Models
Yeasts
53 Citations (Scopus)

The role of phosphatases in TOR signaling in yeast

Düvel, K. & Broach, J., 2003, In : Current Topics in Microbiology and Immunology. 279, p. 19-38 20 p.

Research output: Contribution to journalReview article

Phosphoric Monoester Hydrolases
Yeasts
Physiological Phenomena
Protein Phosphatase 2
Eukaryota
2004
429 Citations (Scopus)

A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size

Jorgensen, P., Rupeš, I., Sharom, J. R., Schneper, L., Broach, J. R. & Tyers, M., Oct 15 2004, In : Genes and Development. 18, 20, p. 2491-2505 15 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Ribosomes
Cell Size
Ribosomal Proteins
Growth
2 Citations (Scopus)

Functional expression of CXCR4 in S. cerevisiae: development of tools for mechanistic and pharmacologic studies.

Zhang, W. B., Wang, Z. X., Murray, J. L., Fujii, N., Broach, J. & Peiper, S. C., Jan 1 2004, In : Ernst Schering Research Foundation workshop. 45, p. 125-152 28 p.

Research output: Contribution to journalArticle

Drug Dose Response Relationship
CXCR4 Receptors
CHO Cells
Site-Directed Mutagenesis
Glycosylation
14 Citations (Scopus)

Making the right choice - Long-range chromosomal interactions in development

Broach, J., Nov 24 2004, In : Cell. 119, 5, p. 583-586 4 p.

Research output: Contribution to journalReview article

Donor Selection
Heterochromatin
Schizosaccharomyces
Switches
Proteins
101 Citations (Scopus)

Metastin and its variant forms suppress migration of pancreatic cancer cells

Masui, T., Doi, R., Mori, T., Toyoda, E., Koizumi, M., Kami, K., Ito, D., Peiper, S. C., Broach, J., Oishi, S., Niida, A., Fujii, N. & Imamura, M., Feb 27 2004, In : Biochemical and Biophysical Research Communications. 315, 1, p. 85-92 8 p.

Research output: Contribution to journalArticle

Kisspeptins
Pancreatic Neoplasms
Cells
Tissue
Cell Line
72 Citations (Scopus)

PP2A phosphatase activity is required for stress and Tor kinase regulation of yeast stress response factor Msn2p

Santhanam, A., Hartley, A., Düvel, K., Broach, J. & Garrett, S., Oct 1 2004, In : Eukaryotic Cell. 3, 5, p. 1261-1271 11 p.

Research output: Contribution to journalArticle

Protein Phosphatase 2
phosphoprotein phosphatase
Sirolimus
Phosphoric Monoester Hydrolases
stress response
109 Citations (Scopus)

Ras and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeast

Wang, Y., Pierce, M., Schneper, L., Güldal, C. G., Zhang, X., Tavazoie, S. & Broach, J. R., Sep 27 2004, In : PLoS biology. 2, 5

Research output: Contribution to journalArticle

Yeast
Yeasts
yeasts
cAMP-dependent protein kinase
Glucose
86 Citations (Scopus)

Sense and sensibility: Nutritional response and signal integration in yeast

Schneper, L., Düvel, K. & Broach, J., Dec 1 2004, In : Current Opinion in Microbiology. 7, 6, p. 624-630 7 p.

Research output: Contribution to journalReview article

Yeasts
Food
Paint
Metabolome
Chromatin
29 Citations (Scopus)

The Ras/Protein Kinase A Pathway Acts in Parallel with the Mob2/Cbk1 Pathway to Effect Cell Cycle Progression and Proper Bud Site Selection

Schneper, L., Krauss, A., Miyamoto, R., Fang, S. & Broach, J. R., Feb 1 2004, In : Eukaryotic Cell. 3, 1, p. 108-120 13 p.

Research output: Contribution to journalArticle

ras Proteins
cAMP-dependent protein kinase
Cyclic AMP-Dependent Protein Kinases
cell cycle
Cell Cycle
15 Citations (Scopus)
Homologous Recombination
Genetic Recombination
Saccharomyces cerevisiae
Gene Conversion
Saccharomyces
2005
318 Citations (Scopus)

Menin and MLL cooperatively regulate expression of cyclin-dependent kinase inhibitors

Milne, T. A., Hughes, C. M., Lloyd, R., Yang, Z., Rozenblatt-Rosen, O., Dou, Y., Schnepp, R. W., Krankel, C., LiVolsi, V. A., Gibbs, D., Hua, X., Roeder, R. G., Meyerson, M. & Hess, J. L., Jan 18 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 3, p. 749-754 6 p.

Research output: Contribution to journalArticle

Multiple Endocrine Neoplasia
Multiple Endocrine Neoplasia Type 1
Cyclin-Dependent Kinases
Leukemia
Myeloid-Lymphoid Leukemia Protein
2278 Citations (Scopus)

Molecular biology: The transcriptional landscape of the mammalian genome

Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M. C., Maeda, N., Oyama, R., Ravasi, T., Lenhard, B., Wells, C., Kodzius, R., Shimokawa, K., Bajic, V. B., Brenner, S. E., Batalov, S., Forrest, A. R. R., Zavolan, M., Davis, M. J., Wilming, L. G., Aidinis, V. & 174 others, Allen, J. E., Ambesi-Impiombato, A., Apweiler, R., Aturaliya, R. N., Bailey, T. L., Bansal, M., Baxter, L., Beisel, K. W., Bersano, T., Bono, H., Chalk, A. M., Chiu, K. P., Choudhary, V., Christoffels, A., Clutterbuck, D. R., Crowe, M. L., Dalla, E., Dalrymple, B. P., Bono, B., Gatta, G. D., Bernardo, D. D., Down, T., Engstrom, P., Fagiolini, M., Faulkner, G., Fletcher, C. F., Fukushima, T., Furuno, M., Futaki, S., Gariboldi, M., Georgii-Hemming, P., Gingeras, T. R., Gojobori, T., Green, R. E., Gustincich, S., Harbers, M., Hayashi, Y., Hensch, T. K., Hirokawa, N., Hill, D., Huminiecki, L., Iacono, M., Ikeo, K., Iwama, A., Ishikawa, T., Jakt, M., Kanapin, A., Katoh, M., Kawasawa, Y., Kelso, J., Kitamura, H., Kitano, H., Kollias, G., Krishnan, S. P. T., Kruger, A., Kummerfeld, S. K., Kurochkin, I. V., Lareau, L. F., Lazarevic, D., Lipovich, L., Liu, J., Liuni, S., McWilliam, S., Babu, M. M., Madera, M., Marchionni, L., Matsuda, H., Matsuzawa, S., Miki, H., Mignone, F., Miyake, S., Morris, K., Mottagui-Tabar, S., Mulder, N., Nakano, N., Nakauchi, H., Ng, P., Nilsson, R., Nishiguchi, S., Nishikawa, S., Nori, F., Ohara, O., Okazaki, Y., Orlando, V., Pang, K. C., Pavan, W. J., Pavesi, G., Pesole, G., Petrovsky, N., Piazza, S., Reed, J., Reid, J. F., Ring, B. Z., Ringwald, M., Rost, B., Ruan, Y., Salzberg, S. L., Sandelin, A., Schneider, C., Schönbach, C., Sekiguchi, K., Semple, C. A. M., Seno, S., Sessa, L., Sheng, Y., Shibata, Y., Shimada, H., Shimada, K., Silva, D., Sinclair, B., Sperling, S., Stupka, E., Sugiura, K., Sultana, R., Takenaka, Y., Taki, K., Tammoja, K., Tan, S. L., Tang, S., Taylor, M. S., Tegner, J., Teichmann, S. A., Ueda, H. R., Nimwegen, E., Verardo, R., Wei, C. L., Yagi, K., Yamanishi, H., Zabarovsky, E., Zhu, S., Zimmer, A., Hide, W., Bult, C., Grimmond, S. M., Teasdale, R. D., Liu, E. T., Brusic, V., Quackenbush, J., Wahlestedt, C., Mattick, J. S., Hume, D. A., Kai, C., Sasaki, D., Tomaru, Y., Fukuda, S., Kanamori-Katayama, M., Suzuki, M., Aoki, J., Arakawa, T., Iida, J., Imamura, K., Itoh, M., Kato, T., Kawaji, H., Kawagashira, N., Kawashima, T., Kojima, M., Kondo, S., Konno, H., Nakano, K., Ninomiya, N., Nishio, T., Okada, M., Plessy, C., Shibata, K., Shiraki, T., Suzuki, S., Tagami, M., Waki, K., Watahiki, A., Okamura-Oho, Y., Suzuki, H., Kawai, J. & Hayashizaki, Y., Sep 2 2005, In : Science. 309, 5740, p. 1559-1563 5 p.

Research output: Contribution to journalArticle

Molecular Biology
Genome
Polyadenylation
Transcription Initiation Site
Transcriptome
18 Citations (Scopus)

Mutations in the nucleosome core enhance transcriptional silencing

Xu, E. Y., Bi, X., Holland, M. J., Gottschling, D. E. & Broach, J. R., Mar 1 2005, In : Molecular and cellular biology. 25, 5, p. 1846-1859 14 p.

Research output: Contribution to journalArticle

Nucleosomes
Mutation
Telomere
Histones
Chromatin
2006
1 Citation (Scopus)

A 51-year-old man with acute dyspnea and leg swelling

Yang, Z., Lavelle, J. C. & Reilly, S. D., Oct 2006, In : Laboratory Medicine. 37, 10, p. 611-612 2 p.

Research output: Contribution to journalArticle

Swelling
104 Citations (Scopus)

A neuropeptide ligand of the G protein-coupled receptor GPR103 regulates feeding, behavioral arousal, and blood pressure in mice

Takayasu, S., Sakurai, T., Iwasaki, S., Teranishi, H., Yamanaka, A., Williams, S. C., Iguchi, H., Kawasawa, Y. I., Ikeda, Y., Sakakibara, I., Ohno, K., Ioka, R. X., Murakami, S., Dohmae, N., Xie, J., Suda, T., Motoike, T., Ohuchi, T., Yanagisawa, M. & Sakai, J., May 9 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 19, p. 7438-7443 6 p.

Research output: Contribution to journalArticle

G-Protein-Coupled Receptors
Arousal
Neuropeptides
Blood Pressure
Ligands

A rapid technique for the visualization of live immobilized yeast cells

Zawadzki, K. & Broach, J., Oct 1 2006, In : Journal of Visualized Experiments. 1, e84.

Research output: Contribution to journalArticle

Immobilized Cells
Epigenomics
Yeast
Microscopic examination
Visualization
13 Citations (Scopus)

Assay for adhesion and agar invasion in S. cerevisiae

Guldal, C. G. & Broach, J., Oct 1 2006, In : Journal of Visualized Experiments. 1, e64.

Research output: Contribution to journalArticle

Biofilms
Agar
Saccharomyces cerevisiae
Assays
Yeast
31 Citations (Scopus)

Creation of GPCR-based chemical sensors by directed evolution in yeast

Ault, A. D. & Broach, J. R., Jan 1 2006, In : Protein Engineering, Design and Selection. 19, 1, p. 1-8 8 p.

Research output: Contribution to journalArticle

G-Protein-Coupled Receptors
Chemical sensors
Yeast
Yeasts
Ligands
62 Citations (Scopus)

Design and synthesis of downsized metastin (45-54) analogs with maintenance of high GPR54 agonistic activity

Niida, A., Wang, Z., Tomita, K., Oishi, S., Tamamura, H., Otaka, A., Navenot, J. M., Broach, J., Peiper, S. C. & Fujii, N., Jan 1 2006, In : Bioorganic and Medicinal Chemistry Letters. 16, 1, p. 134-137 4 p.

Research output: Contribution to journalArticle

Kisspeptins
Pheromones
Genes
Lac Operon
G-Protein-Coupled Receptors
16 Citations (Scopus)
Pheromones
Saccharomyces cerevisiae
Chemokine CXCL12
Pharmacology
Reporter Genes
81 Citations (Scopus)

Single-Cell Observations Reveal Intermediate Transcriptional Silencing States

Xu, E. Y., Zawadzki, K. A. & Broach, J., Jul 21 2006, In : Molecular cell. 23, 2, p. 219-229 11 p.

Research output: Contribution to journalArticle

Heterochromatin
Acetylesterase
Population
Saccharomyces
Reporter Genes
21 Citations (Scopus)

The dynamics of homologous pairing during mating type interconversion in budding yeast

Houston, P. L. & Broach, J., Jan 1 2006, In : PLoS Genetics. 2, 6, p. 896-905 10 p.

Research output: Contribution to journalArticle

Saccharomycetales
recombination
yeast
repair
yeasts
2007
8 Citations (Scopus)

A divide-and-conquer implementation of three sequence alignment and ancestor inference

Yue, F. & Tang, J., Dec 1 2007, Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007. p. 143-150 8 p. 4413048. (Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sequence Alignment
Coffee
Data storage equipment
Software
Dynamic programming

A fatal case of high fever in a 42-year-old woman

Yang, Z., Lakey, M. A. & Reilly, S. D., Dec 1 2007, In : Laboratory Medicine. 38, 2, p. 94-96 3 p.

Research output: Contribution to journalArticle

Succinylcholine
1 Citation (Scopus)

A heuristic for phylogenetic reconstruction using transposition

Yue, F., Zhang, M. & Tang, J., Dec 1 2007, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. p. 802-808 7 p. 4375652. (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Genome
Phylogeny
Gene Order
Genomics

A novel clustering approach: Global optimum search with enhanced positioning

P. Tan, M., Broach, J. & A. Floudas, C., Dec 1 2007, 17th European Symposium on Computer Aided Process Engineering. Plesu, V. & Agachi, P. S. (eds.). p. 983-988 6 p. (Computer Aided Chemical Engineering; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA
Cluster analysis
Microarrays
Clustering algorithms
Genes
30 Citations (Scopus)

A novel clustering approach and prediction of optimal number of clusters: Global optimum search with enhanced positioning

Tan, M. P., Broach, J. R. & Floudas, C. A., Nov 1 2007, In : Journal of Global Optimization. 39, 3, p. 323-346 24 p.

Research output: Contribution to journalArticle

Global Optimum
Number of Clusters
Clustering algorithms
Positioning
Clustering
27 Citations (Scopus)

Context-dependent fusion for landmine detection with ground penetrating radar

Frigui, H., Zhang, L., Gader, P. & Ho, D., Nov 15 2007, Detection and Remediation Technologies for Mines and Minelike Targets XII. 655321. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6553).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ground Penetrating Radar
Landmines
ground penetrating radar
Fusion
Radar
113 Citations (Scopus)

Cross-talk and decision making in MAP kinase pathways

McClean, M. N., Mody, A., Broach, J. & Ramanathan, S., Mar 1 2007, In : Nature Genetics. 39, 3, p. 409-414 6 p.

Research output: Contribution to journalArticle

Mitogen-Activated Protein Kinases
Decision Making
Pheromones
MAP Kinase Kinase Kinases
Saccharomyces cerevisiae
13 Citations (Scopus)

Do cells think?

Ramanathan, S. & Broach, J., Jul 1 2007, In : Cellular and Molecular Life Sciences. 64, 14, p. 1801-1804 4 p.

Research output: Contribution to journalShort survey

Nutritive Value
Automatic Data Processing
Temperature
Population
1 Citation (Scopus)

Erratum: Cross-talk and decision making in MAP kinase pathways (Nature Genetics (2007) 39, (409-414))

McClean, M. N., Mody, A., Broach, J. & Ramanathan, S., Apr 1 2007, In : Nature Genetics. 39, 4, 1 p.

Research output: Contribution to journalComment/debate

Decision Making
Phosphotransferases
11 Citations (Scopus)
Microarrays
Cluster Analysis
Genes
Yeast
DNA
92 Citations (Scopus)

Interaction of MLL amino terminal sequences with menin is required for transformation

Caslini, C., Yang, Z., El-Osta, M., Milne, T. A., Slany, R. K. & Hess, J. L., Aug 1 2007, In : Cancer Research. 67, 15, p. 7275-7283 9 p.

Research output: Contribution to journalArticle

Leukemia
Lymphoid Leukemia
Myeloid Leukemia
Amino Acid Sequence
Proteins
26 Citations (Scopus)

Performance of the Sebia CAPILLARYS 2 for detection and immunotyping of serum monoclonal paraproteins

Yang, Z., Harrison, K., Park, Y. A., Chaffin, C. H., Thigpen, B., Easley, P. L., Smith, J. A., Robinson, C. A., Lorenz, R. G. & Hardy, R. W., Aug 1 2007, In : American journal of clinical pathology. 128, 2, p. 293-299 7 p.

Research output: Contribution to journalArticle

Paraproteins
Electrophoresis
Capillary Electrophoresis
Agar Gel Electrophoresis
Serum
164 Citations (Scopus)

Protein kinase A and Sch9 cooperatively regulate induction of autophagy in Saccharomyces cerevisiae

Yorimitsu, T., Zaman, S., Broach, J. R. & Klionsky, D. J., Oct 1 2007, In : Molecular biology of the cell. 18, 10, p. 4180-4189 10 p.

Research output: Contribution to journalArticle

Autophagy
Cyclic AMP-Dependent Protein Kinases
Saccharomyces cerevisiae
Phosphotransferases
Eukaryotic Cells
499 Citations (Scopus)

Sch9 Is a Major Target of TORC1 in Saccharomyces cerevisiae

Urban, J., Soulard, A., Huber, A., Lippman, S., Mukhopadhyay, D., Deloche, O., Wanke, V., Anrather, D., Ammerer, G., Riezman, H., Broach, J. R., De Virgilio, C., Hall, M. N. & Loewith, R., Jun 8 2007, In : Molecular cell. 26, 5, p. 663-674 12 p.

Research output: Contribution to journalArticle

Saccharomyces cerevisiae
Phosphotransferases
TOR Serine-Threonine Kinases
Phosphorylation
Multiprotein Complexes
2008
3 Citations (Scopus)

A new approach for tree alignment based on local re-optimization

Yue, F. & Tang, J., Sep 17 2008, BioMedical Engineering and Informatics: New Development and the Future - Proceedings of the 1st International Conference on BioMedical Engineering and Informatics, BMEI 2008. p. 34-38 5 p. 4548631. (BioMedical Engineering and Informatics: New Development and the Future - Proceedings of the 1st International Conference on BioMedical Engineering and Informatics, BMEI 2008; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Coffee
Pulse amplitude modulation
Bioinformatics
Dynamic programming
DNA
6 Citations (Scopus)

Context-Dependent multi-sensor fusion for landmine detection

Frigui, H., Zhang, L. & Gader, P., Dec 1 2008, 2008 IEEE International Geoscience and Remote Sensing Symposium - Proceedings. 1 ed. 4779005. (International Geoscience and Remote Sensing Symposium (IGARSS); vol. 2, no. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

landmine
Sensor data fusion
sensor
Fusion reactions
Detectors
18 Citations (Scopus)

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat

Yue, F., Cui, L., dePamphilis, C. W., Moret, B. M. E. & Tang, J., Mar 20 2008, In : BMC genomics. 9, SUPPL. 1, S25.

Research output: Contribution to journalArticle

Chloroplast Genome
Gene Rearrangement
Genome
Phylogeny
Gene Duplication