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Research Output 1975 2019

2008
350 Citations (Scopus)

How Saccharomyces responds to nutrients

Zaman, S., Lippman, S. I., Zhao, X. & Broach, J., Dec 1 2008, In : Annual review of genetics. 42, p. 27-81 55 p.

Research output: Contribution to journalReview article

Saccharomyces
Food
Yeasts
Calculi
Meiosis
25 Citations (Scopus)

Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures

Tan, M. P., Smith, E. N., Broach, J. R. & Floudas, C. A., Jun 6 2008, In : BMC bioinformatics. 9, 268.

Research output: Contribution to journalArticle

Coherent Structures
Data Mining
Microarrays
Microarray Data
Cluster Analysis
3 Citations (Scopus)

Ph.D. training in cancer biology

Torti, F. M., Altieri, D., Broach, J., Fan, H., Lotze, M., Manfredi, J., Matrisian, L., Yu, D. & Giaccia, A., Nov 15 2008, In : Cancer Research. 68, 22, p. 9122-9124 3 p.

Research output: Contribution to journalShort survey

Neoplasms
Students
Career Choice
Curriculum
Consensus
7 Citations (Scopus)

Phylogenetic reconstruction from transpositions

Yue, F., Zhang, M. & Tang, J., Sep 16 2008, In : BMC genomics. 9, SUPPL. 2, S15.

Research output: Contribution to journalArticle

Genome
Phylogeny
Genes
Costs and Cost Analysis
Datasets
153 Citations (Scopus)

SOX5 postmitotically regulates migration, postmigratory differentiation, and projections of subplate and deep-layer neocortical neurons

Kwan, K. Y., Lam, M. M. S., Krsnik, Ž., Kawasawa, Y. I., Lefebvre, V. & Šestan, N., Oct 14 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 41, p. 16021-16026 6 p.

Research output: Contribution to journalArticle

Neurons
Axons
Down-Regulation
Neocortex
Hypothalamus
2009
4 Citations (Scopus)

A space-efficient algorithm for three sequence alignment and ancestor inference

Yue, F. & Tang, J., 2009, In : International Journal of Data Mining and Bioinformatics. 3, 2, p. 192-204 13 p.

Research output: Contribution to journalArticle

Sequence Alignment
Coffee
programming
Dynamic programming
simulation
3 Citations (Scopus)

Attenuated podoplanin staining in breast myoepithelial cells: A potential caveat in the diagnosis of lymphatic invasion

Yang, Z., Adams, A. L. & Hameed, O., Oct 1 2009, In : Applied Immunohistochemistry and Molecular Morphology. 17, 5, p. 425-430 6 p.

Research output: Contribution to journalArticle

Breast
Lymphatic Endothelium
Staining and Labeling
Carcinoma, Intraductal, Noninfiltrating
Epithelium
12 Citations (Scopus)

Chapter 20 Expression of CXCR4, a G-Protein-Coupled Receptor for CXCL12 in Yeast. Identification of New-Generation Inverse Agonists

Evans, B. J., Wang, Z., Broach, J., Oishi, S., Fujii, N. & Peiper, S. C., May 14 2009, Chemokines, Part A. Abelson, J. & Simon, M. (eds.). A ed. p. 399-412 14 p. (Methods in Enzymology; vol. 460, no. A).

Research output: Chapter in Book/Report/Conference proceedingChapter

G-Protein-Coupled Receptors
Yeast
Yeasts
Pheromones
Reporter Genes
38 Citations (Scopus)
Nucleosomes
Chromatin
Saccharomyces cerevisiae
Transcription Factors
Glucose
14 Citations (Scopus)

Clostridium septicum aortitis causing aortic dissection in a 22-year-old man

Yang, Z. & Reilly, S. D., Sep 9 2009, In : Texas Heart Institute Journal. 36, 4, p. 334-336 3 p.

Research output: Contribution to journalArticle

Clostridium septicum
Aortitis
Dissection
Clostridium Infections
Colonic Neoplasms
3 Citations (Scopus)

Context-dependent fusion for mine detection using airborne hyperspectral imagery

Zhang, L., Frigui, H., Gader, P. & Bolton, J., Dec 21 2009, WHISPERS '09 - 1st Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing. 5288973. (WHISPERS '09 - 1st Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fusion reactions
Experiments

Context-dependent fusion of multiple algorithms with minimum classification error learning

Zhang, L., Frigui, H. & Gader, P., Dec 1 2009, 8th International Conference on Machine Learning and Applications, ICMLA 2009. p. 190-195 6 p. 5381831. (8th International Conference on Machine Learning and Applications, ICMLA 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fusion reactions
Classifiers
Agglomeration
359 Citations (Scopus)

Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis

Johnson, M. B., Imamura, Y., Mason, C. E., Krsnik, Ž., Coppola, G., Bogdanović, D., Geschwind, D. H., Mane, S. M., State, M. W. & Šestan, N., May 28 2009, In : Neuron. 62, 4, p. 494-509 16 p.

Research output: Contribution to journalArticle

Human Development
Gene Expression Profiling
Brain
Alternative Splicing
Prefrontal Cortex
134 Citations (Scopus)

Glucose regulates transcription in yeast through a network of signaling pathways

Zaman, S., Lippman, S. I., Schneper, L., Slonim, N. & Broach, J., Jan 20 2009, In : Molecular Systems Biology. 5, 245.

Research output: Contribution to journalArticle

Signaling Pathways
Transcription
Glucose
Protein Kinase
Yeast

Glucose regulates transcription in yeast through a network of signaling pathways (Molecular Systems Biology (2009) 5, 245, DOI: 10.1038/msb.2009.2)

Zaman, S., Lippman, S. I., Schneper, L., Slonim, N. & Broach, J., Jan 20 2009, In : Molecular Systems Biology. 5, 257.

Research output: Contribution to journalComment/debate

Systems Biology
Signaling Pathways
Molecular Biology
Transcription
Glucose
18 Citations (Scopus)

Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions

Freckleton, G., Lippman, S. I., Broach, J. R. & Tavazoie, S., Apr 1 2009, In : PLoS genetics. 5, 4

Research output: Contribution to journalArticle

bacteriophages
Bacteriophages
Transcription Factors
Proteome
transcription factors
69 Citations (Scopus)

Predicting cellular growth from gene expression signatures

Airoldi, E. M., Huttenhower, C., Gresham, D., Lu, C., Caudy, A. A., Dunham, M. J., Broach, J. R., Botstein, D. & Troyanskaya, O. G., Jan 1 2009, In : PLoS computational biology. 5, 1, e1000257.

Research output: Contribution to journalArticle

Transcriptome
Gene expression
Gene Expression
gene expression
Signature
22 Citations (Scopus)

Prevalence of elevated hemoglobin A 2 measured by the CAPILLARYS system

Yang, Z., Chaffin, C. H., Easley, P. L., Thigpen, B. & Reddy, V. V. B., Jan 1 2009, In : American journal of clinical pathology. 131, 1, p. 42-48 7 p.

Research output: Contribution to journalReview article

Hemoglobin A
Thalassemia
Hemoglobinopathies
Capillary Electrophoresis
Prenatal Diagnosis
59 Citations (Scopus)
Cyclic AMP-Dependent Protein Kinases
Food
Genes
RNA Polymerase I
RNA Polymerase III
81 Citations (Scopus)

Selective depletion of molecularly defined cortical interneurons in human holoprosencephaly with severe striatal hypoplasia

Fertuzinhos, S., Krsnik, E., Kawasawa, Y. I., Rain, M. R., Kwan, K. Y., Chen, J. G., Juda, M., Hayashi, M. & Sestan, N., Sep 1 2009, In : Cerebral Cortex. 19, 9, p. 2196-2207 12 p.

Research output: Contribution to journalArticle

Holoprosencephaly
Corpus Striatum
Interneurons
Prosencephalon
Calbindin 2
14 Citations (Scopus)

Simultaneous phylogeny reconstruction and multiple sequence alignment

Yue, F., Shi, J. & Tang, J., Jan 30 2009, In : BMC bioinformatics. 10, SUPPL. 1, S11.

Research output: Contribution to journalArticle

Multiple Sequence Alignment
Sequence Alignment
Phylogeny
Alignment
Phylogenetic Tree
20 Citations (Scopus)

The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication

Shor, E., Warren, C. L., Tietjen, J., Hou, Z., Müller, U., Alborelli, I., Gohard, F. H., Yemm, A. I., Borisov, L., Broach, J. R., Weinreich, M., Nieduszynski, C. A., Ansari, A. Z. & Fox, C. A., Dec 1 2009, In : PLoS genetics. 5, 12, e1000755.

Research output: Contribution to journalArticle

Origin Recognition Complex
replication origin
Replication Origin
open reading frames
gene
2010
169 Citations (Scopus)
gene
seeds
Genes
genes
Exome
52 Citations (Scopus)

Context-dependent multisensor fusion and its application to land mine detection

Frigui, H., Zhang, L. & Gader, P. D., Jun 1 2010, In : IEEE Transactions on Geoscience and Remote Sensing. 48, 6, p. 2528-2543 16 p., 5419982.

Research output: Contribution to journalArticle

Sensor data fusion
Fusion reactions
sensor
Detectors
ground penetrating radar
2 Citations (Scopus)

Gastric Heterotopia in the Rectum

Yang, Z., Yates, T. & Jhala, N. C., Jan 1 2010, In : Clinical Gastroenterology and Hepatology. 8, 1, p. A24

Research output: Contribution to journalArticle

Choristoma
Histocytochemistry
Colonoscopy
Rectum
Microscopy
76 Citations (Scopus)

Initiation of the TORC1-Regulated G0 Program Requires Igo1/2, which License Specific mRNAs to Evade Degradation via the 5′-3′ mRNA Decay Pathway

Talarek, N., Cameroni, E., Jaquenoud, M., Luo, X., Bontron, S., Lippman, S., Devgan, G., Snyder, M., Broach, J. R. & De Virgilio, C., May 14 2010, In : Molecular cell. 38, 3, p. 345-355 11 p.

Research output: Contribution to journalArticle

RNA Stability
Licensure
Messenger RNA
Food
Eukaryotic Cells
7 Citations (Scopus)

Interference with the Jaffé method for creatinine following 5-aminolevulinic acid administration

Quon, H., Grossman, C. E., King, R. L., Putt, M., Donaldson, K., Kricka, L., Finlay, J., Zhu, T., Dimofte, A., Malloy, K., Cengel, K. A. & Busch, T. M., Dec 1 2010, In : Photodiagnosis and Photodynamic Therapy. 7, 4, p. 268-274 7 p.

Research output: Contribution to journalArticle

Aminolevulinic Acid
Creatinine
Enzyme Assays
Kidney
Mucositis
6 Citations (Scopus)
Tacrolimus
Tandem Mass Spectrometry
High Pressure Liquid Chromatography
Ions
Methanol
1 Citation (Scopus)

Systems biology and TOR. past, present, and future

Lippman, S. I. & Broach, J., Oct 5 2010, In : Enzymes. 28, C, p. 317-348 32 p.

Research output: Contribution to journalArticle

Systems Biology
Genes
Genome
Yeast
Yeasts
2011
20 Citations (Scopus)

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters

Tolkunov, D., Zawadzki, K. A., Singer, C., Elfving, N., Morozov, A. V. & Broach, J. R., Jun 15 2011, In : Molecular biology of the cell. 22, 12, p. 2106-2118 13 p.

Research output: Contribution to journalArticle

Nucleosomes
Genetic Promoter Regions
Chromatin
Histone Chaperones
Thermodynamics
36 Citations (Scopus)

Combined transcriptome analysis of fetal human and mouse cerebral cortex exposed to alcohol

Hashimoto-Torii, K., Kawasawa, Y. I., Kuhn, A. & Rakic, P., Mar 8 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 10, p. 4212-4217 6 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Cerebral Cortex
Alcohols
Environmental Exposure
Fetal Alcohol Spectrum Disorders
10 Citations (Scopus)

Decoding complex chemical mixtures with a physical model of a sensor array

Tsitron, J., Ault, A. D., Broach, J. & Morozov, A. V., Oct 1 2011, In : PLoS computational biology. 7, 10, e1002224.

Research output: Contribution to journalArticle

Sensor Array
physical models
Sensor arrays
G-Protein-Coupled Receptors
Physical Model
24 Citations (Scopus)

DiNAMIC: A method to identify recurrent DNA copy number aberrations in tumors

Walter, V., Nobel, A. B. & Wright, F. A., Mar 1 2011, In : Bioinformatics. 27, 5, p. 678-685 8 p., btq717.

Research output: Contribution to journalArticle

Aberrations
Aberration
Tumors
Tumor
Cancer
189 Citations (Scopus)
Neuroendocrine Tumors
Biopsy
Liver
Neoplasms
Survival
29 Citations (Scopus)

High XRCC1 protein expression is associated with poorer survival in patients with head and neck squamous cell carcinoma

Ang, M. K., Patel, M. R., Yin, X. Y., Sundaram, S., Fritchie, K., Zhao, N., Liu, Y., Freemerman, A. J., Wilkerson, M. D., Walter, V., Weissler, M. C., Shockley, W. W., Couch, M. E., Zanation, A. M., Hackman, T., Chera, B. S., Harris, S. L., Miller, C. R., Thorne, L. B., Hayward, M. C. & 5 others, Funkhouser, W. K., Olshan, A. F., Shores, C. G., Makowski, L. & Hayes, D. N., Oct 15 2011, In : Clinical Cancer Research. 17, 20, p. 6542-6552 11 p.

Research output: Contribution to journalArticle

Survival
Proteins
Carcinoma, squamous cell of head and neck
Radiation
Cricetulus
13 Citations (Scopus)

Metabolic control of resting hemispheric cerebral blood flow is oxidative, not glycolytic

Powers, W. J., Videen, T. O., Markham, J., Walter, V. & Perlmutter, J. S., May 1 2011, In : Journal of Cerebral Blood Flow and Metabolism. 31, 5, p. 1223-1228 6 p.

Research output: Contribution to journalArticle

Cerebrovascular Circulation
Glucose
Oxygen
Brain
Multivariate Analysis
837 Citations (Scopus)

Spatio-temporal transcriptome of the human brain

Kang, H. J., Kawasawa, Y. I., Cheng, F., Zhu, Y., Xu, X., Li, M., Sousa, A. M. M., Pletikos, M., Meyer, K. A., Sedmak, G., Guennel, T., Shin, Y., Johnson, M. B., Krsnik, Ž., Mayer, S., Fertuzinhos, S., Umlauf, S., Lisgo, S. N., Vortmeyer, A., Weinberger, D. R. & 6 others, Mane, S., Hyde, T. M., Huttner, A., Reimers, M., Kleinman, J. E. & Šestan, N., Oct 27 2011, In : Nature. 478, 7370, p. 483-489 7 p.

Research output: Contribution to journalArticle

Transcriptome
Brain
Exons
Gene Expression
Gene Expression Regulation
83 Citations (Scopus)

Yeast cells can access distinct quiescent states

Klosinska, M. M., Crutchfield, C. A., Bradley, P. H., Rabinowitz, J. D. & Broach, J. R., Feb 15 2011, In : Genes and Development. 25, 4, p. 336-349 14 p.

Research output: Contribution to journalArticle

Starvation
Yeasts
Food
Growth
Cell Wall
2012
734 Citations (Scopus)

A map of the cis-regulatory sequences in the mouse genome

Shen, Y., Yue, F., Mc Cleary, D. F., Ye, Z., Edsall, L., Kuan, S., Wagner, U., Dixon, J., Lee, L., Ren, B. & Lobanenkov, V. V., Aug 2 2012, In : Nature. 488, 7409, p. 116-120 5 p.

Research output: Contribution to journalArticle

Genome
Caenorhabditis
Gene Expression
Human Genome
Genomics
11 Citations (Scopus)

Ancestral and conserved cis-regulatory architectures in developmental control genes

Rebeiz, M., Castro, B., Liu, F., Yue, F. & Posakony, J. W., Feb 15 2012, In : Developmental biology. 362, 2, p. 282-294 13 p.

Research output: Contribution to journalArticle

Developmental Genes
Genes
Binding Sites
Transcription Factors
Insect Genes
261 Citations (Scopus)

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E. & 66 others, Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F. & Adams, L. B., Aug 13 2012, In : Genome biology. 13, 8, 418.

Research output: Contribution to journalLetter

Encyclopedias
DNA
mice
Genomics
genomics
31 Citations (Scopus)

An evaluation of several fusion algorithms for anti-tank landmine detection and discrimination

Frigui, H., Zhang, L., Gader, P., Wilson, J. N., Ho, K. C. & Mendez-Vazquez, A., Apr 1 2012, In : Information Fusion. 13, 2, p. 161-174 14 p.

Research output: Contribution to journalArticle

Fusion reactions
Ground penetrating radar systems
Landmine detection
Testing
Radar
12 Citations (Scopus)

A unified framework for detecting rare variant quantitative trait associations in pedigree and unrelated individuals via sequence data

Liu, D. & Leal, S. M., May 1 2012, In : Human heredity. 73, 2, p. 105-122 18 p.

Research output: Contribution to journalArticle

Pedigree
Population Genetics
Genetic Association Studies
Sequence Analysis
Costs and Cost Analysis
3 Citations (Scopus)

A Unified Method for Detecting Secondary Trait Associations with Rare Variants: Application to Sequence Data

Liu, D. & Leal, S. M., Nov 1 2012, In : PLoS genetics. 8, 11, e1003075.

Research output: Contribution to journalArticle

Blood Pressure
testing
LDL Lipoproteins
Italy
quantitative traits
295 Citations (Scopus)

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome

Xie, W., Barr, C. L., Kim, A., Yue, F., Lee, A. Y., Eubanks, J., Dempster, E. L. & Ren, B., Feb 17 2012, In : Cell. 148, 4, p. 816-831 16 p.

Research output: Contribution to journalArticle

DNA Methylation
Methylation
Sequence Analysis
Genes
Alleles
4 Citations (Scopus)

BSMac: A MATLAB toolbox implementing a Bayesian spatial model for brain activation and connectivity

Zhang, L., Agravat, S., Derado, G., Chen, S., McIntosh, B. J. & Bowman, F. D. B., Feb 15 2012, In : Journal of Neuroscience Methods. 204, 1, p. 133-143 11 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Activation Analysis
Monte Carlo Method
Markov Chains
Brain
1996 Citations (Scopus)

Comprehensive genomic characterization of squamous cell lung cancers

Hammerman, P. S., Voet, D., Lawrence, M. S., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E. S., Gabriel, S., Getz, G., Imielinski, M., Helman, E., Hernandez, B., Pho, N. H., Meyerson, M., Chu, A., Hye-Chun, J. E., Mungall, A. J. & 316 others, Pleasance, E., Robertson, A. G., Sipahimalani, P., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chuah, E., Coope, R. J. N., Corbett, R., Dhalla, N., Guin, R., He, A., Hirst, C., Hirst, M., Holt, R. A., Lee, D., Li, H. I., Mayo, M., Moore, R. A., Mungall, K., Nip, K. M., Olshen, A., Schein, J. E., Slobodan, J. R., Tam, A., Thiessen, N., Varhol, R., Zeng, T., Zhao, Y., Jones, S. J. M., Marra, M. A., Saksena, G., Cherniack, A. D., Schumacher, S. E., Tabak, B., Carter, S. L., Nguyen, H., Onofrio, R. C., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Protopopov, A., Zhang, J., Hadjipanayis, A., Lee, S., Xi, R., Yang, L., Ren, X., Zhang, H., Shukla, S., Chen, P. C., Haseley, P., Lee, E., Chin, L., Park, P. J., Kucherlapati, R., Socci, N. D., Liang, Y., Schultz, N., Borsu, L., Lash, A. E., Viale, A., Sander, C., Ladanyi, M., Auman, J. T., Hoadley, K. A., Wilkerson, M. D., Shi, Y., Liquori, C., Meng, S., Li, L., Turman, Y. J., Topal, M. D., Tan, D., Waring, S., Buda, E., Walsh, J., Jones, C. D., Mieczkowski, P. A., Singh, D., Wu, J., Gulabani, A., Dolina, P., Bodenheimer, T., Hoyle, A. P., Simons, J. V., Soloway, M. G., Stuart, J., Mose, L. E., Jefferys, S. R., Balu, S., O'Connor, B. D., Chiang, D., Liu, J., Chiang, D. Y., Hayes, D. N., Perou, C. M., Cope, L., Weisenberger, D., Danilova, L., Weisenberger, D. J., Maglinte, D. T., Pan, F., Van Den Berg, D. J., Triche, T., Herman, J. G., Baylin, S. B., Laird, P. W., Noble, M., Gehlenborg, N., DiCara, D., Zhang, J., Wu, C. J., Liu, S. Y., Zou, L., Lin, P., Cho, J., Nazaire, M. D., Robinson, J., Thorvaldsdottir, H., Mesirov, J., Sinha, R., Ciriello, G., Cerami, E., Gross, B., Jacobsen, A., Gao, J., Aksoy, B. A., Weinhold, N., Ramirez, R., Taylor, B. S., Antipin, Y., Reva, B., Mo, Q., Seshan, V., Paik, P. K., Akbani, R., Zhang, N., Broom, B. M., Casasent, T., Unruh, A., Wakefield, C., Cason, R. C., Baggerly, K. A., Weinstein, J. N., Haussler, D., Benz, C. C., Stuart, J. M., Zhu, J., Szeto, C., Scott, G. K., Yau, C., Ng, S., Goldstein, T., Waltman, P., Sokolov, A., Collisson, E., Ellrott, K., Collisson, E. A., Zerbino, D., Ma, S., Craft, B., Du, Y., Cabanski, C., Walter, V., Marron, J. S., Liu, Y., Wang, K., Prins, J. F., Creighton, C. J., Zhang, Y., Travis, W. D., Rekhtman, N., Yi, J., Aubry, M. C., Cheney, R., Dacic, S., Flieder, D., Funkhouser, W., Illei, P., Myers, J., Tsao, M. S., Penny, R., Mallery, D., Shelton, T., Hatfield, M., Morris, S., Yena, P., Shelton, C., Sherman, M., Paulauskis, J., Govindan, R., Azodo, I., Beer, D., Bose, R., Byers, L. A., Carbone, D., Chang, L. W., Chun, E., Ding, L., Heymach, J., Ida, C., Johnson, B., Jurisica, I., Kaufman, J., Kosari, F., Kwiatkowski, D., Maher, C. A., Pao, W., Peifer, M., Robertson, G., Rusch, V., Siegfried, J., Sougnez, C., Thomas, R. K., Tomaszek, S., Vaske, C., Wheeler, D., Wigle, D. A., Wilks, C., Zhang, J. J., Jensen, M. A., Sfeir, R., Kahn, A. B., Chu, A. L., Kothiyal, P., Wang, Z., Snyder, E. E., Pontius, J., Pihl, T. D., Backus, M., Walton, J., Baboud, J., Berton, D. L., Nicholls, M. C., Srinivasan, D., Raman, R., Girshik, S., Kigonya, P. A., Alonso, S., Sanbhadti, R. N., Barletta, S. P., Greene, J. M., Pot, D. A., Bandarchi-Chamkhaleh, B., Boyd, J., Weaver, J., Azodo, I. A., Tomaszek, S. C., Yang, P., Brock, M. V., Rogers, K., Rutledge, M., Brown, T., Lee, B., Shin, J., Trusty, D., Dhir, R., Siegfried, J. M., Potapova, O., Fedosenko, K. V., Zakowski, M., Nemirovich-Danchenko, E., Iacocca, M. V., Brown, J., Rabeno, B., Czerwinski, C., Petrelli, N., Fan, Z., Todaro, N., Eckman, J., Rathmell, W. K., Thorne, L. B., Huang, M., Boice, L., Hill, A., Curley, E., Morrison, C., Gaudioso, C., Bartlett, J. M. S., Kodeeswaran, S., Zanke, B., Sekhon, H., David, K., Juhl, H., Le, X. V., Kohl, B., Thorp, R., Tien, N. V., Bang, N. V., Sussman, H., Phu, B. D., Hajek, R., Hung, N. P., Khan, K. Z., Muley, T., Mills Shaw, K. R., Sheth, M., Yang, L., Demchok, J. A., Davidsen, T., Buetow, K., Eley, G., Ferguson, M., Dillon, L. A. L., Schaefer, C., Guyer, M. S., Ozenberger, B. A., Palchik, J. D., Peterson, J., Sofia, H. J., Thomson, E., Johnson, B. E. & Shen, R., Sep 27 2012, In : Nature. 489, 7417, p. 519-525 7 p.

Research output: Contribution to journalArticle

Squamous Cell Neoplasms
Lung Neoplasms
Mutation
Neoplasms
Genes
40 Citations (Scopus)

Determining functional connectivity using fMRI data with diffusion-based anatomical weighting

Bowman, F. D. B., Zhang, L., Derado, G. & Chen, S., Sep 1 2012, In : NeuroImage. 62, 3, p. 1769-1779 11 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Diffusion Tensor Imaging
Cluster Analysis
Healthy Volunteers
Weights and Measures
96 Citations (Scopus)

Differential pathogenesis of lung adenocarcinoma subtypes involving sequence mutations, copy number, chromosomal instability, and methylation

Wilkerson, M. D., Yin, X., Walter, V., Zhao, N., Cabanski, C. R., Hayward, M. C., Miller, C. R., Socinski, M. A., Parsons, A. M., Thorne, L. B., Haithcock, B. E., Veeramachaneni, N. K., Funkhouser, W. K., Randell, S. H., Bernard, P. S., Perou, C. M. & Hayes, D. N., May 10 2012, In : PloS one. 7, 5, e36530.

Research output: Contribution to journalArticle

Chromosomal Instability
Methylation
adenocarcinoma
methylation
Tumors
4 Citations (Scopus)

High hydrostatic pressure activates transcription factors involved in saccharomyces cerevisiae stress tolerance

Bravim, F., da Silva, L. F., Souza, D. T., Lippman, S. I., Broach, J. R., Fernandes, A. A. R. & Fernandes, P. M. B., Dec 1 2012, In : Current Pharmaceutical Biotechnology. 13, 15, p. 2712-2720 9 p.

Research output: Contribution to journalArticle

Hydrostatic Pressure
Saccharomyces cerevisiae
Transcription Factors
Nucleotide Motifs
Yeasts