Research Output 1955 2020

2020

A rewiring model of intratumoral interaction networks

Sang, M., Rice, S., Jiang, L., Liu, X., Gragnoli, C., Belani, C. P. & Wu, R., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 45-51 7 p.

Research output: Contribution to journalReview article

Open Access
Tumors
Neoplasms
Cells
Blueprints
Game theory
Copula Models
Recurrent Events
Hierarchical Model
Myocardial Infarction
Time-varying

Comparative effectiveness of surgery versus external beam radiation with/without brachytherapy in high-risk localized prostate cancer

Yin, M., Zhao, J., Monk, P., Martin, D., Folefac, E., Joshi, M., Jin, N., Mortazavi, A., Verschraegen, C. & Clinton, S., Jan 1 2020, In : Cancer medicine. 9, 1, p. 27-34 8 p.

Research output: Contribution to journalArticle

Open Access
Brachytherapy
Prostatic Neoplasms
Radiation
Survival
Radiotherapy

Detection and removal of biologically active organic micropollutants from hospital wastewater

Castillo Meza, L., Piotrowski, P., Farnan, J., Tasker, T. L., Xiong, B., Weggler, B., Murrell, K., Dorman, F. L., Vanden Heuvel, J. P. & Burgos, W. D., Jan 15 2020, In : Science of the Total Environment. 700, 134469.

Research output: Contribution to journalArticle

Wastewater
wastewater
liquid
Impurities
Liquids

Dose-dependent effect of aerobic exercise on inflammatory biomarkers in a randomized controlled trial of women at high risk of breast cancer

Haley, J. S., Hibler, E. A., Zhou, S., Schmitz, K. H. & Sturgeon, K. M., Jan 15 2020, In : Cancer. 126, 2, p. 329-336 8 p.

Research output: Contribution to journalArticle

Randomized Controlled Trials
Biomarkers
Exercise
Breast Neoplasms
Interleukin-12

Examining measurement reactivity in daily diary data on substance use: Results from a randomized experiment

Buu, A., Yang, S., Li, R., Zimmerman, M. A., Cunningham, R. M. & Walton, M. A., Mar 2020, In : Addictive Behaviors. 102, 106198.

Research output: Contribution to journalArticle

Cannabis
Drinking
Alcohols
Monitoring
Experiments

Exhortation to lose weight prior to complex ventral hernia repair: Nudge or noodge?

Ssentongo, P., DeLong, C. G., Ssentongo, A. E., Pauli, E. M. & Soybel, D. I., Jan 2020, In : American Journal of Surgery. 219, 1, p. 136-139 4 p.

Research output: Contribution to journalArticle

Ventral Hernia
Herniorrhaphy
Body Mass Index
Weights and Measures
Hernia

km23-1/DYNLRB1 regulation of MEK/ERK signaling and R-Ras in invasive human colorectal cancer cells

Raza, A., Pandey, M. S., Jin, Q. & Mulder, K. M., Jan 1 2020, In : Cell Biology International. 44, 1, p. 155-165 11 p.

Research output: Contribution to journalArticle

Mitogen-Activated Protein Kinase Kinases
Extracellular Signal-Regulated MAP Kinases
Dyneins
Colorectal Neoplasms
Transforming Growth Factors

Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations

Makepeace, K. A. T., Brodie, N. I., Popov, K. I., Gudavicius, G., Nelson, C. J., Petrotchenko, E. V., Dokholyan, N. V. & Borchers, C. H., Jan 16 2020, In : Journal of Proteomics. 211, 103544.

Research output: Contribution to journalArticle

Open Access
Molecular Dynamics Simulation
Proteomics
Molecular dynamics
Ligands
Computer simulation

Lipidic synthetic alkaloids as SK3 channel modulators. Synthesis and biological evaluation of 2-substituted tetrahydropyridine derivatives with potential anti-metastatic activity

Kouba, S., Braire, J., Félix, R., Chantôme, A., Jaffrès, P. A., Lebreton, J., Dubreuil, D., Pipelier, M., Zhang, X., Trebak, M., Vandier, C., Mathé-Allainmat, M. & Potier-Cartereau, M., Jan 15 2020, In : European Journal of Medicinal Chemistry. 186, 111854.

Research output: Contribution to journalArticle

Alkaloids
Modulators
Cells
Breast Neoplasms
Derivatives
1 Citation (Scopus)

Misconceptions regarding the adequacy of best medical intervention alone for asymptomatic carotid stenosis

Abbott, A. L., Brunser, A. M., Giannoukas, A., Harbaugh, R. E., Kleinig, T., Lattanzi, S., Poppert, H., Rundek, T., Shahidi, S., Silvestrini, M. & Topakian, R., Jan 2020, In : Journal of Vascular Surgery. 71, 1, p. 257-269 13 p.

Research output: Contribution to journalReview article

Carotid Endarterectomy
Carotid Stenosis
Angioplasty
Stroke
Life Style
Tea
Liver
Fats
Nuclear Respiratory Factor 1
Sirtuin 1

Navigable Channel-Based Trans-Sulcal Resection of Third Ventricular Colloid Cysts: A Multicenter Retrospective Case Series and Review of the Literature

Lin, M., Bakhsheshian, J., Strickland, B., Rennert, R. C., Chen, J. W., Van Gompel, J. J., Young, R. L., Kumar, P. P., Coppens, J., Curry, W. T., Zacharia, B. E., Bailes, J. E. & Zada, G., Jan 2020, In : World neurosurgery. 133, p. e702-e710

Research output: Contribution to journalArticle

Colloid Cysts
Neuronavigation
Cysts
Length of Stay
Ventriculoperitoneal Shunt

Neighborhood Walkability and BMI Change: A National Study of Veterans in Large Urban Areas

Tarlov, E., Silva, A., Wing, C., Slater, S., Matthews, S. A., Jones, K. K. & Zenk, S. N., Jan 1 2020, In : Obesity. 28, 1, p. 46-54 9 p.

Research output: Contribution to journalArticle

Open Access
Veterans
Linear Models
Veterans Health
Longitudinal Studies
Retrospective Studies

Perilesional Resection of Glioblastoma Is Independently Associated With Improved Outcomes

Al-Holou, W. N., Hodges, T. R., Everson, R. G., Freeman, J., Zhou, S., Suki, D., Rao, G., Ferguson, S. D., Heimberger, A. B., McCutcheon, I. E., Prabhu, S. S., Lang, F. F., Weinberg, J. S., Wildrick, D. M. & Sawaya, R., Jan 1 2020, In : Neurosurgery. 86, 1, p. 112-121 10 p.

Research output: Contribution to journalArticle

Glioblastoma
Multivariate Analysis
Neoplasms
Propensity Score
Analysis of Variance

Pronounced somatic bottleneck in mitochondrial DNA of human hair

Barrett, A., Arbeithuber, B., Zaidi, A., Wilton, P., Paul, I. M., Nielsen, R. & Makova, K. D., Jan 20 2020, In : Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 375, 1790, 1 p.

Research output: Contribution to journalArticle

Open Access
Mitochondrial DNA
Hair
hairs
mitochondrial DNA
Gene Frequency

Temporal and spatial trends and determinants of aggressive prostate cancer among Black and White men with prostate cancer

Wang, M., Chi, G., Bodovski, Y., Holder, S. L., Lengerich, E. J., Wasserman, E. & McDonald, A. C., Jan 1 2020, In : Cancer Causes and Control. 31, 1, p. 63-71 9 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
hydroquinone
Neoplasm Grading
Population
Registries

The Value of Neutrophil to Lymphocyte Ratio in Patients Undergoing Cytoreductive Nephrectomy with Thrombectomy

Peyton, C. C., Abel, E. J., Chipollini, J., Boulware, D. C., Azizi, M., Karam, J. A., Margulis, V., Master, V. A., Matin, S. F., Raman, J. D., Sexton, W. J., Wood, C. G. & Spiess, P. E., Jan 15 2020, In : European Urology Focus. 6, 1, p. 104-111 8 p.

Research output: Contribution to journalArticle

Thrombectomy
Nephrectomy
Renal Cell Carcinoma
Neutrophils
Lymphocytes
2019

(Not giving up) the marathon race of Met targeting therapy: Are we there yet?

Ma, P. C-C., Apr 15 2019, In : Clinical Cancer Research. 25, 8, p. 2375-2378 4 p.

Research output: Contribution to journalArticle

Biomarkers
Therapeutics

2-C-methylated nucleotides terminate virus RNA synthesis by preventing active site closure of the viral RNA-dependent RNA polymerase

Boehr, A. K., Arnold, J. J., Oh, H. S., Cameron, C. E. & Boehr, D. D., Jan 1 2019, In : Journal of Biological Chemistry. 294, 45, p. 16897-16907 11 p.

Research output: Contribution to journalArticle

RNA Replicase
RNA Viruses
Viral RNA
Viruses
Catalytic Domain
1 Citation (Scopus)

A Bayesian joint model of recurrent events and a terminal event

Li, Z., Chinchilli, V. M. & Wang, M., Jan 2019, In : Biometrical Journal. 61, 1, p. 187-202 16 p.

Research output: Contribution to journalArticle

Recurrent Events
Joint Model
Bayesian Model
Frailty
Frailty Model

Abdominal cocoon syndrome: An obstructive adhesiolytic metamorphosis

Renko, A. E., Witte, S. R. & Cooper, A., Apr 1 2019, In : BMJ case reports. 12, 4, e228593.

Research output: Contribution to journalArticle

Peritonitis
Cryptorchidism
Laparotomy

Absolute Quantification of All Identified Plasma Proteins from SWATH Data for Biomarker Discovery

Rice, S. J., Liu, X., Zhang, J. & Belani, C., Feb 1 2019, In : Proteomics. 19, 3, 1800135.

Research output: Contribution to journalArticle

Biomarkers
Blood Proteins
Proteins
Plasma (human)
Monitoring

Abstracts of Presentations at the Association of Clinical Scientists 139th Meeting Hershey, PA, May 15-18, 2019

Donaldson, K., Buchanich, J. M., Grigson, P. S., Deneke, E., Vrana, K. E., Sacks, D. B., Kuehn, G. J., Cardamone, D., Pesce, A., Smiley, S., Nickley, J., Krock, K., Thomas, R., Wilkerson, M. L., Farag, H. A., Challa, S. R., Tice, A. M., Wolk, D. M., Prichard, J., Grant, M. L. & 102 others, Regmi, S., Kerbacher, B., Quinton, L. E., Tice, A. M., Olson, J., Haynes, A., Yu, E., McCully, K. S., Assi, J., Wong, M., Zarrin-Khameh, N., Nifong, T. P., Hawker, C. D., Carlton, G. T., Rivera, J. M., Foulis, P. R., Zuraw, A., Morlote, D., Peker, D., Reddy, V., Harada, S., Crutchfield, C., Zander, D., Barbhuiya, M. A., Pederson, E. C., Straub, M. L., Scott, S. C., Neibauer, T. L., Salter, W. F., Creer, M. H., Zhu, Y., Bornhorst, J. A., Theobald, J. P., Algeciras-Schimnich, A., Cao, L., Knox, J., Hardy, R., Texas, H. J., McGuire, M. F., Hunter, R. L., Brown, R. E., Hicks, J., Cai, Z., Brown, R. E., Ali, Y., Cheng, K. C., Katz, S. R., Ding, Y., Vanselow, D. J., Yakovlev, M. A., Lin, A. Y., Clark, D. P., Vargas, P., Xin, X., Copper, J. E., Canfield, V. A., Ang, K. C., Wang, Y., Xiao, X., De Carlo, F., van Rossum, D. B., La Rivière, P. J., Newell, J., Hossler, C., Roche, M., Warrick, J., Phaeton, R., Kesterson, J., Myers, C., Barrios, R., Mintz, P., Robyak, K., Hamilton, C., McGhee, P., Pederson, C., Straub, M., Scott, S., Neibauer, T., Salter, W., Robyak, K., Singh, N., Morlote, D., Vnencak-Jones, C., Yemelyanova, A., Harada, S., Shah, M., Moghadamtousi, S. Z., Lan, C., Duose, D., Hu, P., Esquenazi, Y., Luthra, R., Ballester, L. Y., Koenig, A. N., Liu, C. G., Zhang, J., Kalia, A., Al-Habib, A., Van Arsdall, M., Dhingra, S., Patel, K. & Tatevian, N., May 1 2019, In : Annals of clinical and laboratory science. 49, 3, p. 403-416 14 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

A calcium/cAMP signaling loop at the ORAI1 mouth drives channel inactivation to shape NFAT induction

Zhang, X., Pathak, T., Yoast, R., Emrich, S., Xin, P., Nwokonko, R. M., Johnson, M., Wu, S., Delierneux, C., Gueguinou, M., Hempel, N., Putney, J. W., Gill, D. L. & Trebak, M., Dec 1 2019, In : Nature communications. 10, 1, 1971.

Research output: Contribution to journalArticle

Open Access
Calcium Signaling
mouth
deactivation
Mouth
calcium
Health Expenditures
Contraceptive Agents
Patient Protection and Affordable Care Act
Intrauterine Devices
Contraception

Acceptability of electronic nicotine delivery systems (ENDS) among HIV positive smokers

Yingst, J., Foulds, J., Zurlo, J., Steinberg, M. B., Eissenberg, T. & Du, P., Jan 1 2019, (Accepted/In press) In : AIDS Care - Psychological and Socio-Medical Aspects of AIDS/HIV.

Research output: Contribution to journalArticle

Nicotine
nicotine
HIV
electronics
Acquired Immunodeficiency Syndrome

Accuracy of the NSQIP risk calculator for predicting complications following adrenalectomy

Walker, J. B., Gogoj, A., Saunders, B., Canter, D. J., Lehman, K. & Raman, J., Aug 1 2019, In : International Urology and Nephrology. 51, 8, p. 1291-1295 5 p.

Research output: Contribution to journalArticle

Adrenalectomy
Quality Improvement
Length of Stay
Urology
Tertiary Healthcare

A central core disease mutation in the Ca2+-binding site of skeletal muscle ryanodine receptor impairs single-channel regulation

Chirasani, V. R., Xu, L., Addis, H. G., Pasek, D. A., Dokholyan, N. V., Meissner, G. & Yamaguchi, N., Aug 2019, In : American Journal of Physiology - Cell Physiology. 317, 2, p. C358-C365

Research output: Contribution to journalArticle

Central Core Myopathy
Ryanodine Receptor Calcium Release Channel
Skeletal Muscle
Binding Sites
Mutation
2 Citations (Scopus)

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

Sharma, A. K., Sormanni, P., Ahmed, N., Ciryam, P., Friedrich, U. A., Kramer, G. & O'Brien, E. P., Jan 1 2019, In : PLoS computational biology. 15, 5, e1007070.

Research output: Contribution to journalArticle

Open Access
Chemical Kinetics
Elongation
Profiling
ribosomes
Stem cells
1 Citation (Scopus)

Acid ceramidase promotes drug resistance in acute myeloid leukemia through NF-κB-dependent P-glycoprotein upregulation

Tan, S. F., Dunton, W., Liu, X., Fox, T. E., Morad, S. A. F., Desai, D., Doi, K., Conaway, M. R., Amin, S., Claxton, D., Wang, H-G., Kester, M., Cabot, M. C., Feith, D. J. & Loughran, T. P., Jan 1 2019, In : Journal of Lipid Research. 60, 6, p. 1078-1086 9 p.

Research output: Contribution to journalArticle

Acid Ceramidase
P-Glycoprotein
Drug Resistance
Acute Myeloid Leukemia
Up-Regulation
1 Citation (Scopus)

A Comprehensive Study of Ultrasound Transducer Characteristics in Microscopic Ultrasound Neuromodulation

Gougheri, H. S., Dangi, A., Kothapalli, S. R. & Kiani, M., Oct 2019, In : IEEE Transactions on Biomedical Circuits and Systems. 13, 5, p. 835-847 13 p., 8734697.

Research output: Contribution to journalArticle

Transducers
Ultrasonics
Acoustics
Brain
Acoustic intensity

A consensus response on the complete picture: reply to Lynøe and Eriksson

Choudhary, A. K., Narang, S. K., Moreno, J. A., Christian, C. W., Servaes, S., Palusci, V. J., Hedlund, G. L., Dias, M. S., Nelson, M. D., Silvera, V. M., Palasis, S., Raissaki, M., Rossi, A. & Offiah, A. C., Mar 7 2019, In : Pediatric Radiology. 49, 3, p. 424-428 5 p.

Research output: Contribution to journalLetter

A Couples-Oriented Intervention for Positive Airway Pressure Therapy Adherence: A Pilot Study of Obstructive Sleep Apnea Patients and Their Partners

Luyster, F. S., Aloia, M. S., Buysse, D. J., Dunbar-Jacob, J., Martire, L. M., Sereika, S. M. & Strollo, P. J., Jan 1 2019, In : Behavioral Sleep Medicine. 17, 5, p. 561-572 12 p.

Research output: Contribution to journalArticle

Obstructive Sleep Apnea
Education
Pressure
Sleep
Self-Help Groups

Activation of the Ah Receptor Modulates Gastrointestinal Homeostasis and the Intestinal Microbiome

Muku, G. E., Murray, I. A. & Perdew, G. H., Oct 1 2019, In : Current Pharmacology Reports. 5, 5, p. 319-331 13 p.

Research output: Contribution to journalReview article

Aryl Hydrocarbon Receptors
Homeostasis
Chemical activation
Ligands
Gastrointestinal Microbiome
2 Citations (Scopus)

Activation of Wnt signaling promotes olaparib resistant ovarian cancer

Yamamoto, T. M., McMellen, A., Watson, Z. L., Aguilera, J., Ferguson, R., Nurmemmedov, E., Thakar, T., Moldovan, G-L., Kim, H., Cittelly, D. M., Joglar, A. M., Brennecke, E. P., Wilson, H., Behbakht, K., Sikora, M. J. & Bitler, B. G., Oct 1 2019, In : Molecular Carcinogenesis. 58, 10, p. 1770-1782 13 p.

Research output: Contribution to journalArticle

Ovarian Neoplasms
Carcinoma
Ovarian Diseases
Recombinational DNA Repair
Cell Line
2 Citations (Scopus)

Active Surveillance as Initial Management of Newly Diagnosed Prostate Cancer: Data from the PURC

Botejue, M., Abbott, D., Danella, J., Fonshell, C., Ginzburg, S., Guzzo, T. J., Lanchoney, T., Marlowe, B., Raman, J., Smaldone, M., Tomaszewski, J. J., Trabulsi, E. J., Uzzo, R. G. & Reese, A. C., May 1 2019, In : Journal of Urology. 201, 5, p. 929-935 7 p.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Urology
Neoplasms
Demography
Therapeutics

Activity versus injury: Further defining the risk/benefit ratio in the Neurosurgery Charity Softball Tournament

Levi, A. D., Starke, R. M., Komotar, R. J. & Harbaugh, R., Jan 1 2019, In : Journal of neurosurgery. 130, 1, p. 333-334 2 p.

Research output: Contribution to journalLetter

Baseball
Charities
Neurosurgery
Odds Ratio
Wounds and Injuries

Acupuncture for Hot Flashes in Cancer Patients: Clinical Characteristics and Traditional Chinese Medicine Diagnosis as Predictors of Treatment Response

Liu, W., Qdaisat, A., Lopez, G., Narayanan, S., Underwood, S., Spano, M., Reddy, A., Guo, Y., Zhou, S., Yeung, S. C., Bruera, E., Garcia, M. K. & Cohen, L., May 1 2019, In : Integrative Cancer Therapies. 18

Research output: Contribution to journalArticle

Open Access
Hot Flashes
Chinese Traditional Medicine
Acupuncture
Neoplasms
Acupuncture Therapy

Acute Invasive Fungal Rhinosinusitis: Frozen Section Histomorphology and Diagnosis with PAS Stain

Crist, H., Hennessy, M., Hodos, J., McGinn, J., White, B., Payne, S. & Warrick, J., Sep 1 2019, In : Head and Neck Pathology. 13, 3, p. 318-326 9 p.

Research output: Contribution to journalArticle

Frozen Sections
Fungi
Coloring Agents
Periodic Acid-Schiff Reaction
Biopsy

Acute phase protein, α – 1- acid glycoprotein (AGP-1), has differential effects on TLR-2 and TLR-4 mediated responses

Sumanth, M. S., Abhilasha, K. V., Jacob, S. P., Chaithra, V. H., Basrur, V., Willard, B., McIntyre, T. M., Prabhu, K. S. & Marathe, G. K., Sep 2019, In : Immunobiology. 224, 5, p. 672-680 9 p.

Research output: Contribution to journalArticle

Acute-Phase Proteins
Sepsis
Glycoproteins
Ligands
Acids
1 Citation (Scopus)

Adaptable microfluidic system for single-cell pathogen classification and antimicrobial susceptibility testing

Li, H., Torab, P., Mach, K. E., Surrette, C., England, M. R., Craft, D. W., Thomas, N. J., Liao, J. C., Puleo, C. & Wong, P. K., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10270-10279 10 p.

Research output: Contribution to journalArticle

Microfluidics
Urine
Anti-Bacterial Agents
Bacteria
Bacterial Infections
7 Citations (Scopus)

Addressing Burnout in Radiologists

Chetlen, A. L., Chan, T. L., Ballard, D. H., Frigini, L. A., Hildebrand, A., Kim, S., Brian, J. M., Krupinski, E. A. & Ganeshan, D., Apr 2019, In : Academic Radiology. 26, 4, p. 526-533 8 p.

Research output: Contribution to journalArticle

Health
Advisory Committees
Radiology
Medicine
Physicians

Adherence to Iron Supplementation in 22 Sub-Saharan African Countries and Associated Factors among Pregnant Women: A Large Population-Based Study

Ba, D. M., Ssentongo, P., Kjerulff, K. H., Na, M., Liu, G., Gao, X. & Du, P., Oct 21 2019, In : Current Developments in Nutrition. 3, 12, nzz120.

Research output: Contribution to journalArticle

Open Access
pregnant women
Africa South of the Sahara
Pregnant Women
Sub-Saharan Africa
Iron

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

Dissection
quantitative trait loci
DNA Shuffling
Genetic Selection
Quantitative Trait Loci

Adolescent and adult nicotine exposure differentially impacts oral nicotine and oral saccharin self-administration in mice

Cole, R. D., Wolsh, C., Zimmerman, M., Harrington, E., Gould, T. J. & Parikh, V., Feb 1 2019, In : Behavioural Brain Research. 359, p. 836-844 9 p.

Research output: Contribution to journalArticle

Saccharin
Self Administration
Nicotine
Tobacco Use Disorder
Impulsive Behavior

Adolescent Behavioral Cancer Prevention in the United States: Creating a Composite Variable and Ranking States’ Performance

Moss, J. L., Liu, B. & Zhu, L., Oct 1 2019, In : Health Education and Behavior. 46, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Neoplasms
Vaccination
Mississippi
Cannabis
Hepatitis B

Adrenalectomy: should urologists not be doing more?

Fuletra, J. G., Schilling, A. L., Canter, D., Hollenbeak, C. S. & Raman, J. D., Jan 1 2019, (Accepted/In press) In : International Urology and Nephrology.

Research output: Contribution to journalReview article

Adrenalectomy
Surgical Specialties
Reoperation
Length of Stay
Mortality

A Drive to Driven Model of Mapping Intraspecific Interaction Networks

Jiang, L., Xu, J., Sang, M., Zhang, Y., Ye, M., Zhang, H., Wu, B., Zhu, Y., Xu, P., Tai, R., Zhao, Z., Jiang, Y., Dong, C., Sun, L., Griffin, C. H., Gragnoli, C. & Wu, R., Dec 20 2019, In : iScience. 22, p. 109-122 14 p.

Research output: Contribution to journalArticle

Open Access
intraspecific interaction
phenotype
altruism
community ecology
mutualism