Penn State Clinical and Translational Science Institute (CTSI)

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  • Web service substitution based on preferences over non-functional attributes

    Santhanam, G. R., Basu, S. & Honavar, V., 2009, SCC 2009 - 2009 IEEE International Conference on Services Computing. p. 210-217 8 p. 5283949. (SCC 2009 - 2009 IEEE International Conference on Services Computing).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    26 Scopus citations
  • Visual methods for examining SVM classifiers

    Caragea, D., Cook, D., Wickham, H. & Honavar, V., 2008, Visual Data Mining - Theory, Techniques and Tools for Visual Analytics. Simoff, S. J., Bohlen, M. H. & Mazeika, A. (eds.). p. 136-153 18 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4404 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    20 Scopus citations
  • Verifying Preferential Equivalence and Subsumption via Model Checking

    Santhanam, G. R., Basu, S. & Honavar, V., 2013, Algorithmic Decision Theory - Third International Conference, ADT 2013, Proceedings. Springer Verlag, p. 324-335 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8176 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Verifying intervention policies to counter infection propagation over networks: A model checking approach

    Santhanam, G. R., Suvorov, Y., Basu, S. & Honavar, V., 2011, AAAI-11 / IAAI-11 - Proceedings of the 25th AAAI Conference on Artificial Intelligence and the 23rd Innovative Applications of Artificial Intelligence Conference. p. 1408-1414 7 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Using global sequence similarity to enhance biological sequence labeling

    Caragea, C., Dobbs, D., Sinapov, J. & Honavar, V., 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 104-111 8 p. 4684880. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Unsupervised learning of probabilistic context-free grammar using iterative biclustering

    Tu, K. & Honavar, V., 2008, Grammatical Inference: Algorithms and Applications - 9th International Colloquium, ICGI 2008, Proceedings. p. 224-237 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5278 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Unambiguity regularization for unsupervised learning of probabilistic grammars

    Tu, K. & Honavar, V., Dec 1 2012, EMNLP-CoNLL 2012 - 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, Proceedings of the Conference. p. 1324-1334 11 p. (EMNLP-CoNLL 2012 - 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, Proceedings of the Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    21 Citations (SciVal)
  • TRIPPER: Rule learning using taxonomies

    Vasile, F., Silvescu, A., Kang, D. K. & Honavar, V., Jul 14 2006, Advances in Knowledge Discovery and Data Mining - 10th Pacific-Asia Conference, PAKDD 2006, Proceedings. p. 55-59 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3918 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • TRIPPER: Rule learning using taxonomies

    Vasile, F., Silvescu, A., Kang, D. K. & Honavar, V., Dec 1 2005, AAAI Workshop - Technical Report. p. 20-27 8 p. (AAAI Workshop - Technical Report; vol. WS-05-04).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Towards simple, easy-to-understand, yet accurate classifiers

    Caragea, D., Cook, D. & Honavar, V., Dec 1 2003, Proceedings - 3rd IEEE International Conference on Data Mining, ICDM 2003. p. 497-500 4 p. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    10 Scopus citations
  • Towards semantics-enabled distributed infrastructure for knowledge acquisition

    Honavar, V. & Caragea, D., 2008, Semantic Scientific Knowledge Integration - Papers from the AAAI Spring Symposium, Technical Report. p. 29-35 7 p. (AAAI Spring Symposium - Technical Report; vol. SS-08-05).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Towards collaborative environments for ontology construction and sharing

    Bao, J., Caragea, D. & Honavar, V., 2006, Proceedings of the 2006 International Symposium on Collaborative Technologies and Systems, CTS 2006. p. 99-108 10 p. 1644121. (Proceedings of the 2006 International Symposium on Collaborative Technologies and Systems, CTS 2006; vol. 2006).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    35 Scopus citations
  • Toward personalized sleep-wake prediction from actigraphy

    Khademi, A., El-Manzalawy, Y., Buxton, O. M. & Honavar, V., Apr 6 2018, 2018 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2018. Institute of Electrical and Electronics Engineers Inc., p. 414-417 4 p. (2018 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2018; vol. 2018-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    7 Scopus citations
  • Top-N-Rank: A Scalable List-wise Ranking Method for Recommender Systems

    Liang, J., Hu, J., Dong, S. & Honavar, V., Jan 22 2019, Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018. Song, Y., Liu, B., Lee, K., Abe, N., Pu, C., Qiao, M., Ahmed, N., Kossmann, D., Saltz, J., Tang, J., He, J., Liu, H. & Hu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1052-1058 7 p. 8621994. (Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • The trajectory of psychological safety in engineering teams: A longitudinal exploration in engineering design education

    Miller, S., Jablokow, K., Marhefka, J., Mohammed, S., Heininger, K. & Ritter, S., 2019, 31st International Conference on Design Theory and Methodology. American Society of Mechanical Engineers (ASME), (Proceedings of the ASME Design Engineering Technical Conference; vol. 7).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • The differential impact of two training strategies on team performance

    Hamilton, K. & Mohammed, S., 2010, 54th Human Factors and Ergonomics Society Annual Meeting 2010, HFES 2010. Vol. 3. p. 1640-1644 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Temporal causality of social support in an online community for cancer survivors

    Bui, N., Yen, J. & Honavar, V., Jan 1 2015, Social Computing, Behavioral-Cultural Modeling, and Prediction - 8th International Conference, SBP 2015, Proceedings. Xu, K., Agarwal, N. & Osgood, N. (eds.). Springer Verlag, p. 13-23 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9021).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Temporal Boolean network models of genetic networks and their inference from gene expression time series

    Silvescu, A. & Honavar, V., Dec 1 2001, Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. Wu, C. H., Wang, P. P. & Wang, J. T. L. (eds.). p. 260-265 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • TCP-Compose* - A TCP-net based algorithm for efficient composition of web services using qualitative preferences

    Santhanam, G. R., Basu, S. & Honavar, V., 2008, Service-Oriented Computing - ICSOC 2008 - 6th International Conference, Proceedings. Springer Verlag, p. 453-467 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5364 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    21 Scopus citations
  • System identification modeling of a smoking cessation intervention

    Timms, K. P., Rivera, D. E., Collins, L. M. & Piper, M. E., 2012, SYSID 2012 - 16th IFAC Symposium on System Identification, Final Program. PART 1 ed. IFAC Secretariat, p. 786-791 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 16, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Structural characterization of RNA-binding sites of proteins: Preliminary results

    Towfic, F., Caragea, C., Dobbs, D., Gemperline, D. C., Wu, F. & Honavar, V., 2007, Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. p. 60-66 7 p. 4425401. (Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches

    Lee, J. H., Hamilton, M., Gleeson, C., Caragea, C., Zaback, P., Sander, J. D., Li, X., Wu, F., Terribilini, M., Honavar, V. & Dobbs, D., 2008, Pacific Symposium on Biocomputing 2008, PSB 2008. p. 501-512 12 p. (Pacific Symposium on Biocomputing 2008, PSB 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • SrVARM: State regularized vector autoregressive model for joint learning of hidden state transitions and state-dependent inter-variable dependencies from multi-variate time series

    Hsieh, T. Y., Sun, Y., Tang, X., Wang, S. & Honavar, V. G., Apr 19 2021, The Web Conference 2021 - Proceedings of the World Wide Web Conference, WWW 2021. Association for Computing Machinery, Inc, p. 2270-2280 11 p. (The Web Conference 2021 - Proceedings of the World Wide Web Conference, WWW 2021).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Sleep disruption due to hospital noises

    Ellenbogen, J. M., Buxton, O. M., Wang, W., Carballeira, A., O'Connor, S., Cooper, D., McKinney, S. M. & Solet, J. M., Dec 1 2011, 10th International Congress on Noise as a Public Health Problem 2011, ICBEN 2011 - Proceedings of the Institute of Acoustics. PART 3 ed. p. 618-626 9 p. (Proceedings of the Institute of Acoustics; vol. 33 2, no. PART 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Sleep/wake state prediction and sleep parameter estimation using unsupervised classification via clustering

    El-Manzalawy, Y., Buxton, O. & Honavar, V., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 718-723 6 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Scopus citations
  • Semi-supervised sequence classification using Abstraction Augmented Markov Models

    Caragea, C., Silvescu, A., Caragea, D. & Honavar, V., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 257-264 8 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Selecting and composing web services through iterative reformulation of functional specifications

    Pathak, J., Basu, S., Lutz, R. & Honavar, V., 2006, Procedings - 18th IEEE International Conference on Tools with Artificial Intelligence, ICTAI 2006. p. 445-454 10 p. 4031930. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Secrecy-preserving query answering for instance checking in EL

    Tao, J., Slutzki, G. & Honavar, V., 2010, Web Reasoning and Rule Systems - Fourth International Conference, RR 2010, Proceedings. p. 195-203 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6333 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    13 Scopus citations
  • Scalable, updatable predictive models for sequence data

    Koul, N., Bui, N. & Honavar, V., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 681-685 5 p. 5706652. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • RNBL-MN: A recursive Naive Bayes learner for sequence classification

    Kang, D. K., Silvescu, A. & Honavar, V., 2006, Advances in Knowledge Discovery and Data Mining - 10th Pacific-Asia Conference, PAKDD 2006, Proceedings. Springer Verlag, p. 45-54 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3918 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Representing and reasoning with modular ontologies

    Bao, J. & Honavar, V., 2006, Semantic Web for Collaborative Knowledge Acquisition - Papers from the AAAI Fall Symposium, Technical Report. p. 86-89 4 p. (AAAI Fall Symposium - Technical Report; vol. FS-06-06).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Regulatory RNA

    Dobbs, D., Brenner, S. E., Honavar, V. G., Jernigan, R. L., Laederach, A. & Morris, Q., 2016, Pacific Symposium on Biocomputing 2016, PSB 2016. World Scientific Publishing Co. Pte Ltd, p. 429-432 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Ranking docked models of protein-protein complexes using predicted partner-specific protein-protein interfaces: A preliminary study

    Xue, L. C., Jordan, R. A., El-Manzalawy, Y., Dobbs, D. & Honavar, V., 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 441-445 5 p. (2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Query translation for ontology-extended data sources

    Bao, J., Caragea, D. & Honavar, V., 2007, Semantic e-Science - Papers from the 2007 AAAI Workshop, Technical Report. p. 9-16 8 p. (AAAI Workshop - Technical Report; vol. WS-07-11).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Pruning strategies for the MTiling constructive learning algorithm

    Parekh, R., Tang, J. & Honavar, V., Dec 1 1997, 1997 IEEE International Conference on Neural Networks, ICNN 1997. p. 1960-1965 6 p. 614199. (IEEE International Conference on Neural Networks - Conference Proceedings; vol. 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Privacy-preserving reasoning on the semantic Web

    Bao, J., Slutzki, G. & Honavar, V., 2007, Proceedings of the IEEE/WIC/ACM International Conference on Web Intelligence, WI 2007. p. 791-797 7 p. 4427191. (Proceedings of the IEEE/WIC/ACM International Conference on Web Intelligence, WI 2007).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    26 Scopus citations
  • Preference based service adaptation using service substitution

    Santhanam, G. R., Basu, S. & Honavar, V., Dec 1 2013, Proceedings - 2013 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2013. p. 487-493 7 p. 6690055. (Proceedings - 2013 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2013; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Predicting protective linear B-cell epitopes using evolutionary information

    El-Manzalawy, Y., Dobbs, D. & Honavar, V., 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 289-292 4 p. 4684905. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    10 Scopus citations
  • Predicting protective bacterial antigens using Random Forest classifiers

    El-Manzalawy, Y., Dobbs, D. & Honavar, V., 2012, 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012. p. 426-433 8 p. (2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • PATENet: Pairwise Alignment of Time Evolving Networks

    Gur, S. & Honavar, V. G., 2018, Machine Learning and Data Mining in Pattern Recognition - 14th International Conference, MLDM 2018, Proceedings. Perner, P. (ed.). Springer Verlag, p. 85-98 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10934 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Parallel Web service composition in MoSCoE: A choreography-based approach

    Pathak, J., Basu, S., Lutz, R. & Honavar, V., 2006, Proceedings of ECOWS 2006: Fourth European Conference on Web Services. p. 3-12 10 p. 4031145. (Proceedings of ECOWS 2006: Fourth European Conference on Web Services).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    25 Scopus citations
  • Package-based description logics - Preliminary results

    Bao, J., Caragea, D. & Honavar, V. G., 2006, The Semantic Web - ISWC 2006 - 5th International Semantic Web Conference, ISWC 2006, Proceedings. Springer Verlag, p. 967-969 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4273 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    5 Scopus citations
  • Package-based description logics

    Bao, J., Voutsadakis, G., Slutzki, G. & Honavar, V., 2009, Modular Ontologies: Concepts, Theories and Techniques for Knowledge Modularization. Stuckenschmidt, H., Parent, C. & Spaccapietra, S. (eds.). p. 349-371 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5445 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    50 Scopus citations
  • Opportunities and challenges in nutrigenetics/nutrigenomics: Building industry-Academia partnerships

    Gillies, P. J. & Kris-Etherton, P. M., Sep 6 2010, Personalized Nutrition,Translating Nutrigenetic/Nutrigenomic Research into Dietary Guidelines". Simopoulos, A. & Milner, J. (eds.). p. 160-168 9 p. (World Review of Nutrition and Dietetics; vol. 101).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • On utilizing qualitative preferences in web service composition: A CP-net based approach

    Santhanam, G. R., Basu, S. & Honavar, V., Sep 24 2008, Proceedings - 2008 IEEE Congress on Services, SERVICES 2008. p. 538-544 7 p. 4578374. (Proceedings - 2008 IEEE Congress on Services, SERVICES 2008; vol. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Ontology-guided extraction of complex nested relationships

    Pandit, S. & Honavar, V., Dec 1 2010, Proceedings - 22nd International Conference on Tools with Artificial Intelligence, ICTAI 2010. p. 173-178 6 p. 5671416. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Ontology-driven induction of decision trees at multiple levels of abstraction

    Zhang, J., Silvescu, A. & Honavar, V., 2002, Abstraction, Reformulation, and Approximation - 5th International Symposium, SARA 2002, Proceedings. Koenig, S. & Holte, R. C. (eds.). Springer Verlag, p. 316-323 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2371).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    33 Scopus citations
  • On the utility of curricula in unsupervised learning of probabilistic grammars

    Tu, K. & Honavar, V., Dec 1 2011, IJCAI 2011 - 22nd International Joint Conference on Artificial Intelligence. p. 1523-1528 6 p. (IJCAI International Joint Conference on Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • On the utility of abstraction in labeling actors in social networks

    Bui, N. & Honavar, V., 2013, Proceedings of the 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2013. Association for Computing Machinery, p. 692-698 7 p. (Proceedings of the 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2013).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • On the semantics of linking and importing in modular ontologies

    Bao, J., Caragea, D. & Honavar, V. G., 2006, The Semantic Web - ISWC 2006 - 5th International Semantic Web Conference, ISWC 2006, Proceedings. Springer Verlag, p. 72-86 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4273 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    41 Scopus citations