Penn State Clinical and Translational Science Institute (CTSI)

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  • 2012

    Unambiguity regularization for unsupervised learning of probabilistic grammars

    Tu, K. & Honavar, V., Dec 1 2012, EMNLP-CoNLL 2012 - 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, Proceedings of the Conference. p. 1324-1334 11 p. (EMNLP-CoNLL 2012 - 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, Proceedings of the Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    19 Scopus citations
  • 2011

    Exemplar-based robust coherent biclustering

    Tu, K., Ouyang, X., Han, D., Yu, Y. & Honavar, V., 2011, Proceedings of the 11th SIAM International Conference on Data Mining, SDM 2011. Society for Industrial and Applied Mathematics Publications, p. 884-895 12 p. (Proceedings of the 11th SIAM International Conference on Data Mining, SDM 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    7 Scopus citations
  • Failure analysis for composition of web services represented as labeled transition systems

    Nadkarni, D., Basu, S., Honavar, V. & Lutz, R., 2011, Web Services and Formal Methods - 7th International Workshop, WS-FM 2010, Revised Selected Papers. p. 161-175 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6551 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Identifying sustainable designs using preferences over sustainability attributes

    Santhanam, G. R., Basu, S. & Honavar, V., 2011, Artificial Intelligence and Sustainable Design - Papers from the AAAI Spring Symposium, Technical Report. AI Access Foundation, p. 91-97 7 p. (AAAI Spring Symposium - Technical Report; vol. SS-11-02).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Improving protein-RNA interface prediction by combining sequence homology based method with a naive bayes classifier: Preliminary results

    Xue, L. C., Walia, R., EL-Manzalawy, Y., Dobbs, D. & Honavar, V., Dec 1 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 556-558 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Learning relational Bayesian classifiers from RDF data

    Lin, H. T., Koul, N. & Honavar, V., 2011, The Semantic Web, ISWC 2011 - 10th International Semantic Web Conference, Proceedings. PART 1 ed. p. 389-404 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7031 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    12 Scopus citations
  • Multi-instance multi-label learning for image classification with large vocabularies

    Yakhnenko, O. & Honavar, V., 2011, BMVC 2011 - Proceedings of the British Machine Vision Conference 2011. British Machine Vision Association, BMVA

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    10 Scopus citations
  • On the utility of curricula in unsupervised learning of probabilistic grammars

    Tu, K. & Honavar, V., Dec 1 2011, IJCAI 2011 - 22nd International Joint Conference on Artificial Intelligence. p. 1523-1528 6 p. (IJCAI International Joint Conference on Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Ranking docked models of protein-protein complexes using predicted partner-specific protein-protein interfaces: A preliminary study

    Xue, L. C., Jordan, R. A., El-Manzalawy, Y., Dobbs, D. & Honavar, V., 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 441-445 5 p. (2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Sleep disruption due to hospital noises

    Ellenbogen, J. M., Buxton, O. M., Wang, W., Carballeira, A., O'Connor, S., Cooper, D., McKinney, S. M. & Solet, J. M., Dec 1 2011, 10th International Congress on Noise as a Public Health Problem 2011, ICBEN 2011 - Proceedings of the Institute of Acoustics. PART 3 ed. p. 618-626 9 p. (Proceedings of the Institute of Acoustics; vol. 33 2, no. PART 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Verifying intervention policies to counter infection propagation over networks: A model checking approach

    Santhanam, G. R., Suvorov, Y., Basu, S. & Honavar, V., 2011, AAAI-11 / IAAI-11 - Proceedings of the 25th AAAI Conference on Artificial Intelligence and the 23rd Innovative Applications of Artificial Intelligence Conference. p. 1408-1414 7 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • 2010

    Abstraction augmented Markov models

    Caragea, C., Silvescu, A., Caragea, D. & Honavar, V., 2010, Proceedings - 10th IEEE International Conference on Data Mining, ICDM 2010. p. 68-77 10 p. 5693960. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • A dynamical systems model for understanding behavioral interventions for weight loss

    Navarro-Barrientos, J. E., Rivera, D. E. & Collins, L. M., Dec 24 2010, Advances in Social Computing - Third International Conference on Social Computing, Behavioral Modeling, and Prediction, SBP 2010, Proceedings. p. 170-179 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6007 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • A framework for developing epitope prediction tools

    El-Manzalawy, Y. & Honavar, V., Oct 25 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 660-661 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    7 Scopus citations
  • Automata-based verification of security requirements of composite web services

    Sun, H., Basu, S., Honavar, V. & Lutz, R., 2010, Proceedings - 2010 IEEE 21st International Symposium on Software Reliability Engineering, ISSRE 2010. p. 348-357 10 p. 5635065. (Proceedings - International Symposium on Software Reliability Engineering, ISSRE).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Dominance testing via model checking

    Santhanam, G. R., Basu, S. & Honavar, V., Jan 1 2010, AAAI-10 / IAAI-10 - Proceedings of the 24th AAAI Conference on Artificial Intelligence and the 22nd Innovative Applications of Artificial Intelligence Conference. AI Access Foundation, p. 357-362 6 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    16 Scopus citations
  • Efficient dominance testing for unconditional preferences

    Santhanam, G. R., Basu, S. & Honavar, V., 2010, Principles of Knowledge Representation and Reasoning: Proceedings of the 12th International Conference, KR 2010. Institute of Electrical and Electronics Engineers Inc., p. 590-592 3 p. (Proceedings of the International Conference on Knowledge Representation and Reasoning).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Identifying and eliminating inconsistencies in mappings across hierarchical ontologies

    Sanghvi, B., Koul, N. & Honavar, V., 2010, On the Move to Meaningful Internet Systems, OTM 2010 - Confederated International Conferences: CoopIS, IS, DOA and ODBASE, Proceedings. PART 2 ed. p. 999-1008 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6427 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Learning in presence of ontology mapping errors

    Koul, N. & Honavar, V., Dec 13 2010, 2010 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2010. p. 291-296 6 p. 5616569. (Proceedings - 2010 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Ontology-guided extraction of complex nested relationships

    Pandit, S. & Honavar, V., Dec 1 2010, Proceedings - 22nd International Conference on Tools with Artificial Intelligence, ICTAI 2010. p. 173-178 6 p. 5671416. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Opportunities and challenges in nutrigenetics/nutrigenomics: Building industry-Academia partnerships

    Gillies, P. J. & Kris-Etherton, P. M., Sep 6 2010, Personalized Nutrition,Translating Nutrigenetic/Nutrigenomic Research into Dietary Guidelines". Simopoulos, A. & Milner, J. (eds.). p. 160-168 9 p. (World Review of Nutrition and Dietetics; vol. 101).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Scalable, updatable predictive models for sequence data

    Koul, N., Bui, N. & Honavar, V., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 681-685 5 p. 5706652. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Secrecy-preserving query answering for instance checking in EL

    Tao, J., Slutzki, G. & Honavar, V., 2010, Web Reasoning and Rule Systems - Fourth International Conference, RR 2010, Proceedings. p. 195-203 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6333 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Semi-supervised sequence classification using Abstraction Augmented Markov Models

    Caragea, C., Silvescu, A., Caragea, D. & Honavar, V., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 257-264 8 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • The differential impact of two training strategies on team performance

    Hamilton, K. & Mohammed, S., 2010, 54th Human Factors and Ergonomics Society Annual Meeting 2010, HFES 2010. Vol. 3. p. 1640-1644 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2009

    Aligning biomolecular networks using modular graph kernels

    Towfic, F., Greenlee, M. H. W. & Honavar, V., Nov 2 2009, Algorithms in Bioinformatics - 9th International Workshop, WABI 2009, Proceedings. p. 345-361 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5724 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    17 Scopus citations
  • An investigation on the students' perception of dissection effectiveness in a redesign context

    Okudan, G. E. & Mohammed, S., 2009, 2008 Proceedings of the ASME International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, DETC 2008. Vol. 5. p. 395-401 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • BenSOA: A flexible service-oriented architecture for power system asset management

    Pham, H. Q., Santhanam, G. R., McCalley, J. D. & Honavar, V. G., 2009, 41st North American Power Symposium, NAPS 2009. 5483991. (41st North American Power Symposium, NAPS 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Combining super-structuring and abstraction on sequence classification

    Silvescu, A., Caragea, C. & Honavar, V., Dec 1 2009, ICDM 2009 - The 9th IEEE International Conference on Data Mining. p. 986-991 6 p. 5360344. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    15 Scopus citations
  • Design and implementation of a query planner for data integration

    Koul, N. & Honavar, V., Dec 1 2009, ICTAI 2009 - 21st IEEE International Conference on Tools with Artificial Intelligence. p. 214-218 5 p. 5363129. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Detection of gene orthology based on protein-protein interaction networks

    Towfic, F., Greenlee, M. H. W. & Honavar, V., Dec 1 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009. p. 48-53 6 p. 5341866

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Learning link-based classifiers from ontology-extended textual data

    Caragea, C., Caragea, D. & Honavar, V., Dec 1 2009, ICTAI 2009 - 21st IEEE International Conference on Tools with Artificial Intelligence. p. 354-361 8 p. 5364346. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Learning link-based naïve bayes classifiers from ontology-extended distributed data

    Caragea, C., Caragea, D. & Honavar, V., Dec 1 2009, On the Move to Meaningful Internet Systems: OTM 2009 - Confederated International Conferences, CoopIS, DOA, IS, and ODBASE 2009, Proceedings. PART 2 ed. p. 1139-1146 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5871 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • MICCLLR: Multiple-instance learning using class conditional log likelihood ratio

    El-Manzalawy, Y. & Honavar, V., 2009, Discovery Science - 12th International Conference, DS 2009, Proceedings. p. 80-91 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5808 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Multi-modal hierarchical dirichlet process model for predicting image annotation and image-object label correspondence

    Yakhnenko, O. & Honavar, V., Dec 1 2009, Society for Industrial and Applied Mathematics - 9th SIAM International Conference on Data Mining 2009, Proceedings in Applied Mathematics 133. p. 280-290 11 p. (Society for Industrial and Applied Mathematics - 9th SIAM International Conference on Data Mining 2009, Proceedings in Applied Mathematics; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    14 Scopus citations
  • Multiple label prediction for image annotation with multiple kernel correlation models

    Yakhnenko, O. & Honavar, V., 2009, 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops 2009. IEEE Computer Society, p. 8-15 8 p. 5204274. (2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops 2009).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    11 Scopus citations
  • Package-based description logics

    Bao, J., Voutsadakis, G., Slutzki, G. & Honavar, V., 2009, Modular Ontologies: Concepts, Theories and Techniques for Knowledge Modularization. Stuckenschmidt, H., Parent, C. & Spaccapietra, S. (eds.). p. 349-371 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5445 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    50 Scopus citations
  • Web service substitution based on preferences over non-functional attributes

    Santhanam, G. R., Basu, S. & Honavar, V., Dec 1 2009, SCC 2009 - 2009 IEEE International Conference on Services Computing. p. 210-217 8 p. 5283949. (SCC 2009 - 2009 IEEE International Conference on Services Computing).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    24 Scopus citations
  • 2008

    An investigation on the students' perception of dissection effectiveness in a redesign context

    Okudan, G. E. & Mohammed, S., 2008, ASME 2008 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, IDETC/CIE2008. p. 395-401 7 p. (Proceedings of the ASME Design Engineering Technical Conference; vol. 5).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Annotating images and image objects using a hierarchical Dirichlet process model

    Yakhnenko, O. & Honavar, V., 2008, Proceedings of the MDM 2008 Workshop - 9th International Workshop on Multimedia Data Mining, Held in Conjunction with the ACM SIGKDD 2008. p. 1-7 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    46 Scopus citations
  • Attribute value taxonomy generation through matrix based adaptive genetic algorithm

    Jo, H., Na, Y. C., Oh, B., Yang, J. & Honavar, V., Dec 22 2008, Proceedings - 20th IEEE International Conference on Tools with Artificial Intelligence, ICTAI'08. p. 393-400 8 p. 4669716. (Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Scopus citations
  • Complexes of on-line self assembly

    Koul, N., Lathrop, J., Lutz, J. & Honavar, V., Sep 15 2008, 2008 IEEE International Conference on Electro/Information Technology, IEEE EIT 2008 Conference. p. 448-452 5 p. 4554344. (2008 IEEE International Conference on Electro/Information Technology, IEEE EIT 2008 Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Composing web services through automatic reformulation of service specifications

    Pathak, J., Basu, S. & Honavar, V., Sep 19 2008, Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008. p. 361-369 9 p. 4578483. (Proceedings - 2008 IEEE International Conference on Services Computing, SCC 2008; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Engineering control approaches for the design and analysis of adaptive behavioral interventions

    Rivera, D. E. & Collins, L. M., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Federated ALCI: Preliminary report

    Voutsadakis, G., Slutzki, G., Honavar, V. & Bao, J., Dec 1 2008, Proceedings - 2008 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2008. p. 575-578 4 p. 4740513. (Proceedings - 2008 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Learning classifiers from large databases using statistical queries

    Koul, N., Caragea, C., Honavar, V., Bahirwani, V. & Caragea, D., Dec 1 2008, Proceedings - 2008 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2008. p. 923-926 4 p. 4740577. (Proceedings - 2008 IEEE/WIC/ACM International Conference on Web Intelligence, WI 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • On-line self assembly

    Koul, N., Lathrop, J., Lutz, J. & Honavar, V., 2008, 5th Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2008. p. 224-228 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • On the decidability of role mappings between modular ontologies

    Bao, J., Voutsadakis, G., Slutzki, G. & Honavar, V., 2008, AAAI-08/IAAI-08 Proceedings - 23rd AAAI Conference on Artificial Intelligence and the 20th Innovative Applications of Artificial Intelligence Conference. p. 400-405 6 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • On utilizing qualitative preferences in web service composition: A CP-net based approach

    Santhanam, G. R., Basu, S. & Honavar, V., Sep 24 2008, Proceedings - 2008 IEEE Congress on Services, SERVICES 2008. p. 538-544 7 p. 4578374. (Proceedings - 2008 IEEE Congress on Services, SERVICES 2008; vol. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Predicting protective linear B-cell epitopes using evolutionary information

    El-Manzalawy, Y., Dobbs, D. & Honavar, V., 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 289-292 4 p. 4684905. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    10 Scopus citations