Plant Pathology and Environmental Microbiology

  • United States

Research Output 1974 2019

2019

A 1,000-year-old RNA virus

Peyambari, M., Warner, S., Stoler, N., Rainer, D. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 1, e01188-18.

Research output: Contribution to journalArticle

Chrysovirus
RNA Viruses
Zea mays
viruses
Viruses

A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing

Xie, K. & Yang, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Transfer RNA
Genes
Gene Editing

Baseline sensitivity of penicillium spp. To difenoconazole

Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.

Research output: Contribution to journalArticle

Penicillium
molds (fungi)
fludioxonil
pome fruits
active ingredients
1 Citation (Scopus)

Characterization of early blight resistance in potato cultivars

Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.

Research output: Contribution to journalArticle

blight
potatoes
cultivars
Alternaria solani
foliar diseases

Corrigendum: Inference of convergent gene acquisition among pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash (Frontiers in Microbiology (2019) 10 (270) DOI: 10.3389/fmicb.2019.00270)

Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradoví, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 00963.

Research output: Contribution to journalComment/debate

Open Access
Cucumis melo
Citrullus
Pseudomonas syringae
Cucurbita
Microbiology
4 Citations (Scopus)

CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications

Molla, K. A. & Yang, Y., Oct 1 2019, In : Trends in Biotechnology. 37, 10, p. 1121-1142 22 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
DNA
Genes
Agricultural Crops
Inborn Genetic Diseases
1 Citation (Scopus)

CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis

Minkenberg, B., Zhang, J., Xie, K. & Yang, Y., Jan 1 2019, In : Plant Biotechnology Journal. 17, 1, p. 5-8 4 p.

Research output: Contribution to journalLetter

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
RNA
Gene Editing

Determinants of coinfection in the mycoviruses

Thapa, V. & Roossinck, M. J., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, MAY, 169.

Research output: Contribution to journalComment/debate

Open Access
Coinfection
Fungal Viruses
Verticillium
1-aminocyclopropane-1-carboxylate deaminase
gene overexpression
Verticillium dahliae
1-aminocyclopropane-1-carboxylic acid
turf grasses
warm season
Cynodon dactylon
Sclerotinia homoeocarpa
alternative hosts

Efficacy of Double Nickel LC (Bacillus amyloliquefaciens D747 strain) for management of white mold in snap and dry bean

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Jan 1 2019, In : Plant Health Progress. 20, 1, p. 61-66 6 p.

Research output: Contribution to journalArticle

Bacillus amyloliquefaciens
dry beans
green beans
nickel
molds (fungi)

Erwinia amylovora auxotrophic mutant exometabolomics and virulence on apples

Klee, S. M., Sinn, J. P., Finley, M., Allman, E. L., Smith, P. B., Aimufua, O., Sitther, V., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00935-19.

Research output: Contribution to journalArticle

Erwinia amylovora
auxotrophs
Malus
virulence
Virulence
10 Citations (Scopus)

Evolutionary and ecological links between plant and fungal viruses

Roossinck, M. J., Jan 1 2019, In : New Phytologist. 221, 1, p. 86-92 7 p.

Research output: Contribution to journalReview article

mycoviruses
Plant Viruses
plant viruses
Viruses
viruses
Pleurotus
Agaricales
Biomass
Acinetobacter
Nitrogen

Extragenic suppression of elongation factor P gene mutant phenotypes in erwinia amylovora

Klee, S. M., Sinn, J. P., Holmes, A. C., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0072218.

Research output: Contribution to journalArticle

Erwinia amylovora
Phenotype
Genes
Malus
Virulence

Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica

Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 1 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.

Research output: Contribution to journalArticle

Trialeurodes vaporariorum
Bemisia tabaci
Costa Rica
geographical distribution
Aleyrodidae
1 Citation (Scopus)

Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima

Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.

Research output: Contribution to journalArticle

Ailanthus
Verticillium
Agricultural Crops
Blood Vessels
Fungi

Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight

Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.

Research output: Contribution to journalArticle

Calonectria
Buxus sempervirens
composting
blight
ammonia

Impact of cultivated hosts on the recombination of cucumber mosaic virus

Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 7, e01770.

Research output: Contribution to journalArticle

Cucumovirus
Cucumber mosaic virus
Genetic Recombination
Tobacco
pepper
1 Citation (Scopus)

Inference of convergent gene acquisition among Pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash

Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradović, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, FEB, 270.

Research output: Contribution to journalArticle

Open Access
Cucumis melo
Citrullus
Pseudomonas syringae
Cucurbita
Genome
1 Citation (Scopus)

Localized recombination drives diversification of killing spectra for phage-derived syringacins

Baltrus, D. A., Clark, M., Smith, C. & Hockett, K., Feb 1 2019, In : ISME Journal. 13, 2, p. 237-249 13 p.

Research output: Contribution to journalArticle

Bacteriocins
bacteriocins
bacteriophages
Bacteriophages
Genetic Recombination

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, Michalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In : Phytobiomes Journal.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Manipulation of aphid behavior by a persistent plant virus

Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.

Research output: Contribution to journalArticle

Plant Viruses
Aphids
plant viruses
Aphidoidea
Cucumovirus

Mushroom sciarid fly, Lycoriella ingenua (Diptera: Sciaridae) adults and larvae vector Mushroom Green Mold (Trichoderma aggressivum ft. aggressivum) spores

Mazin, M., Harvey, R., Andreadis, S., Pecchia, J. A., Cloonan, K. & Rajotte, E. G., Jan 1 2019, (Accepted/In press) In : Applied Entomology and Zoology.

Research output: Contribution to journalArticle

Trichoderma aggressivum
Lycoriella
Sciaridae
mushrooms
molds (fungi)

Neonicotinoid seed treatments of soybean provide negligible benefits to US farmers

Mourtzinis, S., Krupke, C. H., Esker, P., Varenhorst, A., Arneson, N. J., Bradley, C. A., Byrne, A. M., Chilvers, M. I., Giesler, L. J., Herbert, A., Kandel, Y. R., Kazula, M. J., Hunt, C., Lindsey, L. E., Malone, S., Mueller, D. S., Naeve, S., Nafziger, E., Reisig, D. D., Ross, W. J. & 3 others, Rossman, D. R., Taylor, S. & Conley, S. P., Sep 9 2019, In : Scientific reports. 9, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
Soybeans
Seeds
Therapeutics
Farmers
Practice Management

Optimizing fungicide timing for the management of white mold in processing snap bean in New York

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Nov 1 2019, In : Crop Protection. 125, 104883.

Research output: Contribution to journalArticle

green beans
molds (fungi)
boscalid
fungicides
thiophanate-methyl

Predicting CRISPR/Cas9-Induced Mutations for Precise Genome Editing

Molla, K. A. & Yang, Y., Jan 1 2019, (Accepted/In press) In : Trends in Biotechnology.

Research output: Contribution to journalShort survey

Clustered Regularly Interspaced Short Palindromic Repeats
Learning systems
Repair
Genes
Mutation

Request for revision of the statutes of the international committee on systematics of prokaryotes

Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.

Research output: Contribution to journalArticle

prokaryote
prokaryotic cells
committees
Publications
taxonomy

Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize

Galindo-Castañeda, T., Brown, K. M., Kuldau, G. A., Roth, G. W., Wenner, N. G., Ray, S., Schneider, H. & Lynch, J. P., Jan 1 2019, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Zea mays
Anatomy
corn
root rot
Genotype
1 Citation (Scopus)

Survival of Lab Grown Calonectria pseudonaviculata Microsclerotia During Small-Scale Composting

Harvey, R. J., Davis, D. D., Shishkoff, N. & Pecchia, J. A., Jan 2 2019, In : Compost Science and Utilization. 27, 1, p. 24-34 11 p.

Research output: Contribution to journalArticle

Calonectria
composting
incubators (equipment)
temperature
compost
1 Citation (Scopus)

The apple fruitlet model system for fire blight disease

Klee, S. M., Sinn, J. P. & McNellis, T. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Erwinia amylovora
Malus
Pyrus
Symptom Assessment
Host Specificity
1 Citation (Scopus)

The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens

Xie, S., Wang, Y., Wei, W., Li, C., Liu, Y., Qu, J., Meng, Q., Lin, Y., Yin, W., Yang, Y. & Luo, C., Jan 1 2019, In : Current Genetics.

Research output: Contribution to journalArticle

Virulence
Fungi
Cell Wall
Cell Death
Beriberi
16 Citations (Scopus)

The global burden of pathogens and pests on major food crops

Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.

Research output: Contribution to journalArticle

food crops
pathogen
pests
crop
food
5 Citations (Scopus)

The Inherent Conflicts in Developing Soil Microbial Inoculants

Kaminsky, L. M., Trexler, R. V., Malik, R. J., Hockett, K. & Bell, T., Feb 1 2019, In : Trends in Biotechnology. 37, 2, p. 140-151 12 p.

Research output: Contribution to journalReview article

Agricultural Inoculants
Soil
Soils
Crops
Fertilizers
1 Citation (Scopus)

The past, present, and future of barley yellow dwarf management

Walls, J., Rajotte, E. G. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.

Research output: Contribution to journalReview article

Hordeum
barley
Disease Management
Insecticides
disease control
Solanum tuberosum subsp. andigenum
Solanum
Phytophthora infestans
Diploidy
diploidy

Unraveling the ecology and epidemiology of an emerging fungal disease, sea turtle egg fusariosis (STEF)

Smyth, C. W., Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondoid, J., O’donnell, K. & Geiser, D. M., May 1 2019, In : PLoS pathogens. 15, 5, e1007682.

Research output: Contribution to journalArticle

Open Access
Fusariosis
Turtles
Mycoses
Ecology
Ovum

Whole-genome comparisons of Penicillium spp. Reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness during apple fruit decay

Wu, G., Jurick, W. M., Lichtner, F. J., Peng, H., Yin, G., Gaskins, V. L., Yin, Y., Hua, S. S., Peter, K. A. & Bennett, J. W., Jan 1 2019, In : PeerJ. 2019, 1, e6170.

Research output: Contribution to journalArticle

Penicillium expansum
Penicillium
Patulin
Malus
Multigene Family
2018
5 Citations (Scopus)

An Erwinia amylovora yjeK mutant exhibits reduced virulence, increased chemical sensitivity and numerous environmentally dependent proteomic alterations

Klee, S. M., Mostafa, I., Chen, S., Dufresne, C., Lehman, B. L., Sinn, J. P., Peter, K. A. & McNellis, T. W., Jul 1 2018, In : Molecular plant pathology. 19, 7, p. 1667-1678 12 p.

Research output: Contribution to journalArticle

Erwinia amylovora
proteomics
virulence
Proteomics
Virulence
7 Citations (Scopus)
Agaricus bisporus
pasteurization
composting
bacterial communities
substrate

Bacterial gall of Loropetalum chinense caused by Pseudomonas amygdali pv. loropetali pv. nov.

Harmon, C. L., Timilsina, S., Bonkowski, J., Jones, D. D., Sun, X., Vallad, G. E., Sepulveda, L. R., Bull, C. T. & Jones, J. B., Apr 1 2018, In : Plant disease. 102, 4, p. 799-806 8 p.

Research output: Contribution to journalArticle

Pseudomonas amygdali
galls
Loropetalum
Pseudomonas syringae pv. savastanoi
pathogenicity
3 Citations (Scopus)

Canola root-Associated microbiomes in the Canadian Prairies

Lay, C. Y., Bell, T., Hamel, C., Harker, K. N., Mohr, R., Greer, C. W., Yergeau, É. & St-Arnaud, M., Jun 8 2018, In : Frontiers in Microbiology. 9, JUN, 1188.

Research output: Contribution to journalArticle

Microbiota
Rhizosphere
Peas
Triticum
Pedobacter
3 Citations (Scopus)

Characterization of a new apple luteovirus identified by high-throughput sequencing

Liu, H., Wu, L., Nikolaeva, E., Peter, K. A., Liu, Z., Mollov, D., Cao, M. & Li, R., May 15 2018, In : Virology Journal. 15, 1, 85.

Research output: Contribution to journalArticle

Luteovirus
Malus
Viruses
Polymerase Chain Reaction
Luteoviridae
Impatiens
Genes
Genome
Vegetables
Nucleotides

Characterizing mycoviruses

Peyambari, M. & Roossinck, M. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 13-24 12 p. (Methods in Molecular Biology; vol. 1848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Viruses
Double-Stranded RNA
Molecular Pathology
Viral Genome
Cellulose
4 Citations (Scopus)

Coevolution of a persistent plant virus and its pepper hosts

Safari, M. & Roossinck, M. J., Jul 1 2018, In : Molecular Plant-Microbe Interactions. 31, 7, p. 766-776 11 p.

Research output: Contribution to journalArticle

Endornavirus
Plant Viruses
Capsicum
plant viruses
sweet peppers
4 Citations (Scopus)

Comparison of genotyping by sequencing and microsatellite markers for unravelling population structure in the clonal fungus Verticillium dahliae

Rafiei, V., Banihashemi, Z., Jiménez-Díaz, R. M., Navas-Cortés, J. A., Landa, B. B., Jimenez Gasco, M. D. M., Turgeon, B. G. & Milgroom, M. G., Jan 1 2018, In : Plant Pathology. 67, 1, p. 76-86 11 p.

Research output: Contribution to journalArticle

Verticillium
Verticillium dahliae
Microsatellite Repeats
genotyping
population structure
4 Citations (Scopus)

Concepts, approaches, and avenues for modelling crop health and crop losses

Savary, S., Nelson, A. D., Djurle, A., Esker, P., Sparks, A., Amorim, L., Bergamin Filho, A., Caffi, T., Castilla, N., Garrett, K., McRoberts, N., Rossi, V., Yuen, J. & Willocquet, L., Oct 1 2018, In : European Journal of Agronomy. 100, p. 4-18 15 p.

Research output: Contribution to journalArticle

crop losses
crop
crops
modeling
plant diseases and disorders

Contribution of Medicago sativa to the productivity and nutritive value of forage in semi-arid grassland pastures

Klabi, R., Bell, T., Hamel, C., Iwaasa, A., Schellenberg, M. P. & St-Arnaud, M., Mar 1 2018, In : Grass and Forage Science. 73, 1, p. 159-173 15 p.

Research output: Contribution to journalArticle

nutritive value
Medicago sativa
forage
pasture
legumes
4 Citations (Scopus)

Distribution and diversity of begomoviruses in tomato and sweet pepper plants in Costa Rica

Barboza, N., Blanco-Meneses, M., Esker, P., Moriones, E. & Inoue-Nagata, A. K., Jan 1 2018, In : Annals of Applied Biology. 172, 1, p. 20-32 13 p.

Research output: Contribution to journalArticle

Begomovirus
sweet peppers
Costa Rica
tomatoes
Geographical Locations