Plant Pathology and Environmental Microbiology

  • United States

Research Output 1974 2019

2019

A 1,000-year-old RNA virus

Peyambari, M., Warner, S., Stoler, N., Rainer, D. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 1, e01188-18.

Research output: Contribution to journalArticle

Chrysovirus
RNA Viruses
Zea mays
viruses
Viruses

A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing

Xie, K. & Yang, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Transfer RNA
Genes
Gene Editing

Baseline sensitivity of penicillium spp. To difenoconazole

Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.

Research output: Contribution to journalArticle

Penicillium
molds (fungi)
fludioxonil
pome fruits
active ingredients

Characterization of early blight resistance in potato cultivars

Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.

Research output: Contribution to journalArticle

blight
potatoes
cultivars
Alternaria solani
foliar diseases

CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications

Molla, K. A. & Yang, Y., Jan 1 2019, In : Trends in Biotechnology.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
DNA
Genes
Agricultural Crops
Inborn Genetic Diseases

CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis

Minkenberg, B., Zhang, J., Xie, K. & Yang, Y., Jan 1 2019, In : Plant Biotechnology Journal. 17, 1, p. 5-8 4 p.

Research output: Contribution to journalLetter

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
RNA
Gene Editing
4 Citations (Scopus)

Evolutionary and ecological links between plant and fungal viruses

Roossinck, M. J., Jan 1 2019, In : New Phytologist. 221, 1, p. 86-92 7 p.

Research output: Contribution to journalReview article

mycoviruses
Plant Viruses
plant viruses
Viruses
viruses
Pleurotus
Agaricales
Biomass
Acinetobacter
Nitrogen

Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica

Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 1 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.

Research output: Contribution to journalArticle

Trialeurodes vaporariorum
Bemisia tabaci
Costa Rica
geographical distribution
Aleyrodidae
1 Citation (Scopus)

Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima

Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.

Research output: Contribution to journalArticle

Ailanthus
Verticillium
Agricultural Crops
Blood Vessels
Fungi

Impact of Cultivated Hosts on the Recombination of Cucumber Mosaic Virus

Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Apr 1 2019, In : Journal of virology. 93, 7

Research output: Contribution to journalArticle

Cucumovirus
Cucumber mosaic virus
Genetic Recombination
Tobacco
pepper
1 Citation (Scopus)

Localized recombination drives diversification of killing spectra for phage-derived syringacins

Baltrus, D. A., Clark, M., Smith, C. & Hockett, K., Feb 1 2019, In : ISME Journal. 13, 2, p. 237-249 13 p.

Research output: Contribution to journalArticle

Bacteriocins
bacteriocins
bacteriophages
Bacteriophages
Genetic Recombination

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 othersMichalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In : Phytobiomes Journal.

Research output: Contribution to journalArticle

Manipulation of aphid behavior by a persistent plant virus

Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.

Research output: Contribution to journalArticle

Plant Viruses
Aphids
plant viruses
Aphidoidea
Cucumovirus

Request for revision of the statutes of the international committee on systematics of prokaryotes

Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.

Research output: Contribution to journalArticle

prokaryote
prokaryotic cells
committees
Publications
taxonomy

Survival of Lab Grown Calonectria pseudonaviculata Microsclerotia During Small-Scale Composting

Harvey, R. J., Davis, D. D., Shishkoff, N. & Pecchia, J. A., Jan 1 2019, (Accepted/In press) In : Compost Science and Utilization.

Research output: Contribution to journalArticle

Calonectria
composting
incubators (equipment)
temperature
compost

The global burden of pathogens and pests on major food crops

Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.

Research output: Contribution to journalArticle

food crops
pathogen
pests
crop
food

The Inherent Conflicts in Developing Soil Microbial Inoculants

Kaminsky, L. M., Trexler, R. V., Malik, R. J., Hockett, K. & Bell, T., Feb 1 2019, In : Trends in Biotechnology. 37, 2, p. 140-151 12 p.

Research output: Contribution to journalReview article

Agricultural Inoculants
Soil
Soils
Crops
Fertilizers

The past, present, and future of barley yellow dwarf management

Walls, J., Rajotte, E. G. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.

Research output: Contribution to journalReview article

Luteovirus
Barley yellow dwarf virus
Aphids
decision support systems
Hordeum
Solanum tuberosum subsp. andigenum
Solanum
Phytophthora infestans
Diploidy
diploidy

Whole-genome comparisons of Penicillium spp. Reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness during apple fruit decay

Wu, G., Jurick, W. M., Lichtner, F. J., Peng, H., Yin, G., Gaskins, V. L., Yin, Y., Hua, S. S., Peter, K. A. & Bennett, J. W., Jan 1 2019, In : PeerJ. 2019, 1, e6170.

Research output: Contribution to journalArticle

Penicillium expansum
Penicillium
Patulin
Malus
Multigene Family
2018

An Erwinia amylovora yjeK mutant exhibits reduced virulence, increased chemical sensitivity and numerous environmentally dependent proteomic alterations

Klee, S. M., Mostafa, I., Chen, S., Dufresne, C., Lehman, B. L., Sinn, J. P., Peter, K. A. & McNellis, T. W., Jul 1 2018, In : Molecular plant pathology. 19, 7, p. 1667-1678 12 p.

Research output: Contribution to journalArticle

Erwinia amylovora
proteomics
virulence
Proteomics
Virulence
5 Citations (Scopus)
Agaricus bisporus
pasteurization
composting
bacterial communities
substrate

Bacterial gall of Loropetalum chinense caused by Pseudomonas amygdali pv. loropetali pv. nov.

Harmon, C. L., Timilsina, S., Bonkowski, J., Jones, D. D., Sun, X., Vallad, G. E., Sepulveda, L. R., Bull, C. T. & Jones, J. B., Apr 1 2018, In : Plant disease. 102, 4, p. 799-806 8 p.

Research output: Contribution to journalArticle

Pseudomonas amygdali
galls
Loropetalum
Pseudomonas syringae pv. savastanoi
pathogenicity
1 Citation (Scopus)

Canola root-Associated microbiomes in the Canadian Prairies

Lay, C. Y., Bell, T., Hamel, C., Harker, K. N., Mohr, R., Greer, C. W., Yergeau, É. & St-Arnaud, M., Jun 8 2018, In : Frontiers in Microbiology. 9, JUN, 1188.

Research output: Contribution to journalArticle

Microbiota
Rhizosphere
Peas
Triticum
Pedobacter
1 Citation (Scopus)

Characterization of a new apple luteovirus identified by high-throughput sequencing

Liu, H., Wu, L., Nikolaeva, E., Peter, K. A., Liu, Z., Mollov, D., Cao, M. & Li, R., May 15 2018, In : Virology Journal. 15, 1, 85.

Research output: Contribution to journalArticle

Luteovirus
Malus
Viruses
Polymerase Chain Reaction
Luteoviridae
Impatiens
Genes
Genome
Vegetables
Nucleotides

Characterizing mycoviruses

Peyambari, M. & Roossinck, M. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 13-24 12 p. (Methods in Molecular Biology; vol. 1848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Viruses
Double-Stranded RNA
Molecular Pathology
Viral Genome
Cellulose
3 Citations (Scopus)

Coevolution of a persistent plant virus and its pepper hosts

Safari, M. & Roossinck, M. J., Jul 1 2018, In : Molecular Plant-Microbe Interactions. 31, 7, p. 766-776 11 p.

Research output: Contribution to journalArticle

Endornavirus
Plant Viruses
Capsicum
plant viruses
sweet peppers
2 Citations (Scopus)

Comparison of genotyping by sequencing and microsatellite markers for unravelling population structure in the clonal fungus Verticillium dahliae

Rafiei, V., Banihashemi, Z., Jiménez-Díaz, R. M., Navas-Cortés, J. A., Landa, B. B., Jimenez Gasco, M. D. M., Turgeon, B. G. & Milgroom, M. G., Jan 1 2018, In : Plant Pathology. 67, 1, p. 76-86 11 p.

Research output: Contribution to journalArticle

Verticillium
Verticillium dahliae
Microsatellite Repeats
genotyping
population structure
2 Citations (Scopus)

Concepts, approaches, and avenues for modelling crop health and crop losses

Savary, S., Nelson, A. D., Djurle, A., Esker, P., Sparks, A., Amorim, L., Bergamin Filho, A., Caffi, T., Castilla, N., Garrett, K., McRoberts, N., Rossi, V., Yuen, J. & Willocquet, L., Oct 1 2018, In : European Journal of Agronomy. 100, p. 4-18 15 p.

Research output: Contribution to journalArticle

crop losses
crop
crops
modeling
plant diseases and disorders

Contribution of Medicago sativa to the productivity and nutritive value of forage in semi-arid grassland pastures

Klabi, R., Bell, T., Hamel, C., Iwaasa, A., Schellenberg, M. P. & St-Arnaud, M., Mar 1 2018, In : Grass and Forage Science. 73, 1, p. 159-173 15 p.

Research output: Contribution to journalArticle

nutritive value
Medicago sativa
forage
pasture
legumes
2 Citations (Scopus)

Distribution and diversity of begomoviruses in tomato and sweet pepper plants in Costa Rica

Barboza, N., Blanco-Meneses, M., Esker, P., Moriones, E. & Inoue-Nagata, A. K., Jan 1 2018, In : Annals of Applied Biology. 172, 1, p. 20-32 13 p.

Research output: Contribution to journalArticle

Begomovirus
sweet peppers
Costa Rica
tomatoes
Geographical Locations

Do volatile compounds produced by Fusarium oxysporum and Verticillium dahliae affect stress tolerance in plants?

Li, N. & Kang, S., Jul 3 2018, In : Mycology. 9, 3, p. 166-175 10 p.

Research output: Contribution to journalArticle

Verticillium
Indoleacetic Acids
Fusarium
Salts
Salt-Tolerance
ozonation
Ozone
green beans
Genotype
genotype
1 Citation (Scopus)

Effects of Pre- and Postanthesis Applications of Demethylation Inhibitor Fungicides on Fusarium Head Blight and Deoxynivalenol in Spring and Winter Wheat

Paul, P. A., Bradley, C. A., Madden, L. V., Dalla Lana, F., Bergstrom, G. C., Dill-Macky, R., Wise, K. A., Esker, P., McMullen, M., Grybauskas, A., Kirk, W. W., Milus, E. & Ruden, K., Dec 1 2018, In : Plant disease. 102, 12, p. 2500-2510 11 p.

Research output: Contribution to journalArticle

Fusarium head blight
deoxynivalenol
spring wheat
winter wheat
fungicides

Environmental and Management Factors Associated with Bacterial Diseases of Onion in Pennsylvania

Pfeufer, E. E. & Gugino, B. K., Nov 1 2018, In : Plant disease. 102, 11, p. 2205-2211 7 p.

Research output: Contribution to journalArticle

onions
soil temperature
incidence
Mid-Atlantic region
crop losses
1 Citation (Scopus)

Evaluating the profitability of foliar fungicide programs in mid-atlantic soft-red winter wheat production

Sylvester, P. N., Lana, F. D., Mehl, H. L., Collins, A. A., Paul, P. A. & Kleczewski, N. M., Aug 1 2018, In : Plant disease. 102, 8, p. 1627-1637 11 p.

Research output: Contribution to journalArticle

soft red winter wheat
profitability
fungicides
developmental stages
leaf emergence

First report of black rot caused by Xanthomonas campestris on arugula in California

Rosenthal, E. R., Sepulveda, L. R., Bull, C. T. & Koike, S. T., May 1 2018, In : Plant Disease. 102, 5, 1 p.

Research output: Contribution to journalComment/debate

arugula
Xanthomonas campestris

First report of fusarium stem canker on pyrularia pubera, a rare native parasitic shrub in forests of southwestern Pennsylvania

Wickert, K. L., Metheny, A. M., Davis, D. D., Geiser, D. M., Wenzel, J. W., Planinsek, D. & Kasson, M. T., Sep 1 2018, In : Plant disease. 102, 9, 1 p.

Research output: Contribution to journalComment/debate

Fusarium
shrubs
stems
1 Citation (Scopus)

First report of Uromyces halstedii rust on native painted trillium in Pennsylvania

Davis, D. D. & Harvey, R. J., Feb 1 2018, In : Plant Disease. 102, 2, 1 p.

Research output: Contribution to journalComment/debate

Trillium
Uromyces

First report of ‘Candidatus phytoplasma trifolii’-related strain of 16SrVI-A phytoplasma subgroup, associated with elm yellows disease in american elm (Ulmus americana L.) in Ohio, U.S.A

Flower, C. E., Hayes-Plazolles, N., Slavicek, J. M. & Rosa, C., Feb 1 2018, In : Plant Disease. 102, 2, 1 p.

Research output: Contribution to journalComment/debate

16SrVI (Clover proliferation group)
Ulmus americana
Ulmus
Phytoplasma

Fungicide resistance management guidelines for cucurbit downy and powdery mildew control in the mid-Atlantic and Northeast regions of the United States in 2018

Wyenandt, C. A., McGrath, M. T., Everts, K. L., Rideout, S. L., Gugino, B. K. & Kleczewski, N., Jan 1 2018, In : Plant Health Progress. 19, 1, p. 34-36 3 p.

Research output: Contribution to journalArticle

fungicide resistance
resistance management
downy mildew
Cucurbitaceae
powdery mildew

Genetic diversity and virulence of wheat and barley strains of xanthomonas translucens from the upper midwestern United States

Curland, R. D., Gao, L., Bull, C. T., Vinatzer, B. A., Dill-Macky, R., Van Eck, L. & Ishimaru, C. A., Apr 1 2018, In : PHYTOPATHOLOGY. 108, 4, p. 443-453 11 p.

Research output: Contribution to journalArticle

Xanthomonas translucens
Midwestern United States
Xanthomonas translucens pv. translucens
virulence
barley

Genetic diversity of apple- and crabapple-infecting isolates of Venturia inaequalis in Pennsylvania, the United States, determined by microsatellite markers

Sitther, V., Garrido Haro, P. A., Molineros, J. E., Garzon, C. D. & Jimenez Gasco, M. D. M., Apr 1 2018, In : Forest Pathology. 48, 2, e12405.

Research output: Contribution to journalArticle

Venturia inaequalis
Malus
population structure
apples
microsatellite repeats
4 Citations (Scopus)

Genome-based evolutionary history of Pseudomonas spp

Hesse, C., Schulz, F., Bull, C. T., Shaffer, B. T., Yan, Q., Shapiro, N., Hassan, K. A., Varghese, N., Elbourne, L. D. H., Paulsen, I. T., Kyrpides, N., Woyke, T. & Loper, J. E., Jun 1 2018, In : Environmental microbiology. 20, 6, p. 2142-2159 18 p.

Research output: Contribution to journalArticle

Pseudomonas
genome
Genome
history
gene

Genome-wide association mapping analyses applied to polyamines

Barboza-Barquero, L., Esker, P. & Alcázar, R., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 427-432 6 p. (Methods in Molecular Biology; vol. 1694).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome-Wide Association Study
Polyamines
Genetic Association Studies
Arabidopsis
9 Citations (Scopus)

ICTV virus taxonomy profile: Partitiviridae

ICTV Report Consortium, Jan 1 2018, In : Journal of General Virology. 99, 1, p. 17-18 2 p., 000985.

Research output: Contribution to journalArticle

Fungi
Viruses
Genome
Double-Stranded RNA
Oocysts

In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin

Palukaitis, P. & Roossinck, M. J., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)

Investigating the viral ecology of global bee communities with high-throughput metagenomics

Galbraith, D. A., Fuller, Z. L., Ray, A. M., Brockmann, A., Frazier, M., Gikungu, M. W., Martinez, J. F. I., Kapheim, K. M., Kerby, J. T., Kocher, S. D., Losyev, O., Muli, E., Patch, H. M., Rosa, C., Sakamoto, J. M., Stanley, S., Vaudo, A. D. & Grozinger, C. M., Dec 1 2018, In : Scientific reports. 8, 1, 8879.

Research output: Contribution to journalArticle

Metagenomics
Bees
Ecology
Viruses
Oceania