Plant Pathology and Environmental Microbiology

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Research Output 1974 2019

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2019

A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing

Xie, K. & Yang, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Transfer RNA
Genes
Gene Editing
1 Citation (Scopus)

The apple fruitlet model system for fire blight disease

Klee, S. M., Sinn, J. P. & McNellis, T. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Erwinia amylovora
Malus
Pyrus
Symptom Assessment
Host Specificity
2018

Characterizing mycoviruses

Peyambari, M. & Roossinck, M. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 13-24 12 p. (Methods in Molecular Biology; vol. 1848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Viruses
Double-Stranded RNA
Molecular Pathology
Viral Genome
Cellulose

Genome-wide association mapping analyses applied to polyamines

Barboza-Barquero, L., Esker, P. & Alcázar, R., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 427-432 6 p. (Methods in Molecular Biology; vol. 1694).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome-Wide Association Study
Polyamines
Genetic Association Studies
Arabidopsis

In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin

Palukaitis, P. & Roossinck, M. J., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017
12 Citations (Scopus)

CRISPR/Cas9-Enabled Multiplex Genome Editing and Its Application

Minkenberg, B., Wheatley, M. & Yang, Y., Jan 1 2017, Progress in Molecular Biology and Translational Science. Elsevier B.V., p. 111-132 22 p. (Progress in Molecular Biology and Translational Science; vol. 149).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Agricultural Crops
Gene Editing
Plant Genes

Small Linear Satellite RNAs

Kim, M. & Roossinck, M. J., Jan 1 2017, Viroids and Satellites. Elsevier Inc., p. 649-658 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Satellite RNAs
Helper Viruses
Viruses
Plant Viruses
Virus Replication
2016
2 Citations (Scopus)

Plant Pathogens as Indicators of Climate Change

Garrett, K. A., Nita, M., De Wolf, E. D., Esker, P., Gomez-Montano, L. & Sparks, A. H., Jan 1 2016, Climate Change: Observed Impacts on Planet Earth: Second Edition. Elsevier Inc., p. 325-338 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

pathogen
climate change
indicator
phenology
flowering
2 Citations (Scopus)

Plant virus diversity and evolution

Stobbe, A. & Roossinck, M. J., Jan 1 2016, Current Research Topics in Plant Virology. Springer International Publishing, p. 197-215 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Viruses
plant viruses
Viruses
viruses
Plant Pathology
2015
1 Citation (Scopus)

Does composting eradicate the pathogen responsible for boxwood blight? an outline of future investigations

Harvey, R., Davis, D. D. & Pecchia, J. A., Jun 15 2015, Proceedings of the 2014 Annual Meeting of the International Plant Propagators Society. Heuser, C. W. (ed.). International Society for Horticultural Science, p. 211-215 5 p. (Acta Horticulturae; vol. 1085).

Research output: Chapter in Book/Report/Conference proceedingChapter

Buxus sempervirens
composting
blight
pathogens
5 Citations (Scopus)

Pezizomycotina: Eurotiomycetes

Geiser, D. M., Lobuglio, K. F. & Gueidan, C., Jan 1 2015, The Mycota: A Comprehensive Treatise on Fungi As Experimental Systems for Basic and Applied Research: VII Systematics and Evolution Part B 2nd Edition. Springer Berlin Heidelberg, p. 121-141 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Eurotiomycetes
Pezizomycotina
Ascomycota
Mycocaliciomycetidae
Eurotiomycetidae
2014

Climate change and plant biosecurity: Implications for policy

Luck, J., Campbell, I. D., Magarey, R., Isard, S. A., Aurambout, J. P. & Finlay, K., Jan 1 2014, The Handbook of Plant Biosecurity: Principles and Practices for the Identification, Containment and Control of Organisms that Threaten Agriculture and the Environment Globally. Springer Netherlands, p. 655-691 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Climate Change
biosecurity
climate change
pests
Plant Weeds
7 Citations (Scopus)

Ecological genomics of pseudomonas syringae

Baltrus, D. A., Hendry, T. A. & Hockett, K., Apr 1 2014, Genomics of Plant-Associated Bacteria. Springer-Verlag Berlin Heidelberg, p. 59-77 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pseudomonas syringae
Genomics
Plant Diseases
Genetic Research
Bacteriophages
6 Citations (Scopus)

Fusarium oxysporum

Kang, S., Demers, J., Jimenez Gasco, M. D. M. & Rep, M., Jun 1 2014, Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens. Springer-Verlag Berlin Heidelberg, p. 99-119 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fusarium
Pathogens
Genes
Virulence Factors
Pathology

Soybean seed oil: Nutritional composition, healthy benefits and commercial applications

de Almeida Chuffa, L. G., Vieira, F. R., da Silva, D. A. F. & Franco, D. M., Jan 1 2014, Seed Oil: Biological Properties, Health Benefits and Commercial Applications. Nova Science Publishers, Inc., p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Soybean Oil
seed oils
Soybeans
soybean oil
Seeds

Virus-resistant crops and trees

Rosa, C. & Falk, B. W., Apr 1 2014, Plant Biotechnology: Experience and Future Prospects. Springer International Publishing, p. 155-168 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Interference
Viruses
Crops
Insect Viruses
Insect Vectors
2013
15 Citations (Scopus)

Inoculation and scoring methods for rice sheath blight disease

Jia, Y., Liu, G., Park, D. S. & Yang, Y., Jan 8 2013, Rice Protocols. Yang, Y. (ed.). p. 257-268 12 p. (Methods in Molecular Biology; vol. 956).

Research output: Chapter in Book/Report/Conference proceedingChapter

Research Design
Rhizoctonia
Inborn Genetic Diseases
Disease Resistance
Oryza
14 Citations (Scopus)

Molecular strategies to improve rice disease resistance

Helliwell, E. E. & Yang, Y., 2013, Rice Protocols. Vol. 956. p. 285-309 25 p. (Methods in Molecular Biology; vol. 956).

Research output: Chapter in Book/Report/Conference proceedingChapter

Beriberi
Disease Resistance
Transgenes
Magnaporthe
DNA Shuffling
21 Citations (Scopus)

Multiplexed Interactions. Viruses of Endophytic Fungi.

Bao, X. & Roossinck, M. J., Jan 1 2013, Advances in Virus Research. Academic Press Inc., p. 37-58 22 p. (Advances in Virus Research; vol. 86).

Research output: Chapter in Book/Report/Conference proceedingChapter

Endophytes
Fungi
Viruses
Plant Viruses
Symbiosis
2012
3 Citations (Scopus)

Atomic force microscopy: A tool for studying biophysical surface properties underpinning fungal interactions with plants and substrates

Adams, E., Emerson, D., Croker, S., Kim, H. S., Modla, S., Kang, S. & Czymmek, K., Jan 20 2012, Plant Fungal Pathogens: Methods and Protocols. p. 151-164 14 p. (Methods in Molecular Biology; vol. 835).

Research output: Chapter in Book/Report/Conference proceedingChapter

Surface Properties
Atomic Force Microscopy
Fungal Spores
Spores
20 Citations (Scopus)

Persistent plant viruses: Molecular hitchhikers or epigenetic elements?

Roossinck, M. J., Nov 1 2012, Viruses: Essential Agents of Life. Springer Netherlands, Vol. 9789400748996. p. 177-186 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Viruses
plant viruses
Viruses
Epigenomics
epigenetics
3 Citations (Scopus)

Viruses, fungi and plants: Cross-kingdom communication and mutualism

Rodriguez, R. J. & Roossinck, M. J., Oct 1 2012, Biocommunication of Fungi. Springer Netherlands, Vol. 9789400742642. p. 219-227 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Viruses
Symbiosis
mutualism
Fungi
Viruses
2011
1 Citation (Scopus)

Online aerobiology process model

Russo, J. M. & Isard, S. A., Jan 1 2011, GIS Applications in Agriculture: Volume Three: Invasive Species. CRC Press, p. 159-166 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

aerobiology
Triticum
Agriculture
Internet
Names
2008
4 Citations (Scopus)

Application of aerobiology to IPM

Isard, S. A., Mortensen, D., Fleischer, S. J. & De Wolf, E. D., Jan 1 2008, Integrated Pest Management: Concepts, Tactics, Strategies and Case Studies. Cambridge University Press, p. 90-106 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Weeds
Air
pests
Biota
Pest Control
9 Citations (Scopus)

A review of molecular phylogenetics in Aspergillus, and prospects for a robust genus-wide phylogeny

Geiser, D. M., Samson, R. A., Varga, J., Rokas, A. & Witiak, S. M., Dec 1 2008, Aspergillus in the Genomic Era. Wageningen Academic Publishers, p. 17-32 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

phylogeny
Aspergillus
Phylogeny
Yeasts
Genome
7 Citations (Scopus)

Genetic bottlenecks

Ali, A. & Roossinck, M. J., 2008, Plant Virus Evolution. Springer Berlin Heidelberg, p. 123-131 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Density
Plant Viruses
Genetic Drift
Population
RNA Viruses
5 Citations (Scopus)

Mutant Clouds and Bottleneck Events in Plant Virus Evolution

Roossinck, M. J., Dec 1 2008, Origin and Evolution of Viruses. Elsevier Ltd, p. 251-258 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Viruses
Genetic Drift
RNA Viruses
DNA-Directed DNA Polymerase
Infection
9 Citations (Scopus)

Symbiosis, mutualism and symbiogenesis

Roossinck, M. J., 2008, Plant Virus Evolution. Springer Berlin Heidelberg, p. 157-164 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Symbiosis
mutualism
symbiosis
Viruses
viruses
5 Citations (Scopus)

Virus populations, mutation rates and frequencies

Pita, J. S. & Roossinck, M. J., Dec 1 2008, Plant Virus Evolution. Springer Berlin Heidelberg, p. 109-121 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Viruses
Mutation Rate
plant viruses
Viruses
mutation
2007
82 Citations (Scopus)

Biocontrol of Root Diseases by Pseudomonas fluorescens CHA0: Current Concepts and Experimental Approaches

Voisard, C., Bull, C. T., Keel, C., Laville, J., Maurhofer, M., Schnider, U., Défago, G. & Haas, D., Dec 21 2007, Molecular Ecology of Rhizosphere Microorganisms: Biotechnology and the Release of GMOs. Wiley-Blackwell, p. 67-89 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pseudomonas fluorescens
Genome
5 Citations (Scopus)

Mechanisms of plant virus evolution and identification of genetic bottlenecks: Impact on diseasemanagement

Roossinck, M. J. & Ali, A., Oct 31 2007, Biotechnology and Plant Disease Management. CABI Publishing, p. 109-124 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Viruses
population bottleneck
Molecular Evolution
plant viruses
Viruses
2006
1 Citation (Scopus)

Defense signaling and pathway interactions involved in rice disease resistance

Zhou, X., Bailey, T. & Yang, Y., Jan 1 2006, Model Plants and Crop Improvement. CRC Press, p. 207-225 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

beriberi
Beriberi
Disease Resistance
disease resistance
Genes
7 Citations (Scopus)

Disease assessment concepts and the advancements made in improving the accuracy and precision of plant disease data

Nutter, F. W., Esker, P. & Coelho Netto, R. A., Dec 1 2006, Plant disease epidemiology: facing challenges of the 21st Century: Under the aegis of an International Plant Disease Epidemiology Workshop held at Landernau, France, 10-15th April, 2005. Springer Netherlands, p. 95-103 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plant Diseases
Linear Models
Education
2004

Molecular and genetic basis of plant-fungal pathogen interactions

Kang, S. & Dobinson, K. F., Jan 1 2004, Applied Mycology and Biotechnology. C ed. Elsevier, p. 59-97 39 p. (Applied Mycology and Biotechnology; vol. 4, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Biology
Plant Diseases
Mycoses
Virulence
Economics