Plant Pathology and Environmental Microbiology

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Research Output 1974 2020

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2020

Blistering1 modulates penicillium expansum virulence via vesicle-mediated protein secretion

Jurick, W. M., Peng, H., Beard, H. S., Garrett, W. M., Lichtner, F. J., Luciano-Rosario, D., Macarisin, O., Liu, Y., Peter, K. A., Gaskins, V. L., Yang, T., Mowery, J., Bauchan, G., Keller, N. P. & Cooper, B., Jan 1 2020, In : Molecular and Cellular Proteomics. 19, 2, p. 344-361 18 p.

Research output: Contribution to journalArticle

Penicillium
Virulence
Patulin
Fungi
Proteins

Metatranscriptomic sequencing of a cyanobacterial soil-surface consortium with and without a diverse underlying soil microbiome

Bell, T. H., Trexler, R. V., Peng, X., Huntemann, M., Clum, A., Foster, B., Foster, B., Roux, S., Palaniappan, K., Varghese, N., Mukherjee, S., Reddy, T. B. K., Daum, C., Copeland, A., Ivanova, N. N., Kyrpides, N. C., Pennacchio, C., Eloe-Fadrosh, E. A. & Bruns, M. A., Jan 2 2020, In : Microbiology Resource Announcements. 9, 1, e01361-19.

Research output: Contribution to journalArticle

Open Access
Microbiota
Soil
Cyanobacteria
Urea
2019
1 Citation (Scopus)

A 1,000-year-old RNA virus

Peyambari, M., Warner, S., Stoler, N., Rainer, D. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 1, e01188-18.

Research output: Contribution to journalArticle

Chrysovirus
RNA Viruses
Zea mays
viruses
Viruses

Baseline sensitivity of penicillium spp. To difenoconazole

Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.

Research output: Contribution to journalArticle

Penicillium
molds (fungi)
fludioxonil
pome fruits
active ingredients
1 Citation (Scopus)

Characterization of early blight resistance in potato cultivars

Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.

Research output: Contribution to journalArticle

blight
potatoes
cultivars
Alternaria solani
foliar diseases

Comparative analysis uncovers the limitations of current molecular detection methods for Fusarium oxysporum f. Sp. Cubense Race 4 strains

Magdama, F., Monserrate-Maggi, L., Serrano, L., Sosa, D., Geiser, D. M. & Jiménez-Gasco, M. D. M., Jan 1 2019, In : PloS one. 14, 9, e0222727.

Research output: Contribution to journalArticle

Open Access
Musa
Fusarium
Pathogens
Fusarium oxysporum
bananas
2 Citations (Scopus)
Verticillium
1-aminocyclopropane-1-carboxylate deaminase
gene overexpression
Verticillium dahliae
1-aminocyclopropane-1-carboxylic acid
turf grasses
warm season
Cynodon dactylon
Sclerotinia homoeocarpa
alternative hosts

Efficacy of Double Nickel LC (Bacillus amyloliquefaciens D747 strain) for management of white mold in snap and dry bean

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Jan 1 2019, In : Plant Health Progress. 20, 1, p. 61-66 6 p.

Research output: Contribution to journalArticle

Bacillus amyloliquefaciens
dry beans
green beans
nickel
molds (fungi)

Erwinia amylovora auxotrophic mutant exometabolomics and virulence on apples

Klee, S. M., Sinn, J. P., Finley, M., Allman, E. L., Smith, P. B., Aimufua, O., Sitther, V., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00935-19.

Research output: Contribution to journalArticle

Erwinia amylovora
auxotrophs
Malus
virulence
Virulence

Evolution of the Genes Encoding Effector Candidates Within Multiple Pathotypes of Magnaporthe oryzae

Kim, K. T., Ko, J., Song, H., Choi, G., Kim, H., Jeon, J., Cheong, K., Kang, S. & Lee, Y. H., Nov 6 2019, In : Frontiers in Microbiology. 10, 2575.

Research output: Contribution to journalArticle

Open Access
Magnaporthe
Genes
Poaceae
Oryza
Molecular Evolution
Pleurotus
Agaricales
Biomass
Acinetobacter
Nitrogen

Extragenic suppression of elongation factor P gene mutant phenotypes in erwinia amylovora

Klee, S. M., Sinn, J. P., Holmes, A. C., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0072218.

Research output: Contribution to journalArticle

Erwinia amylovora
Phenotype
Genes
Malus
Virulence

Genetic analysis of resistance to bacterial leaf spot in the heirloom lettuce cultivar Reine des Glaces

Sandoya, G. V., Maisonneuve, B., Truco, M. J., Bull, C. T., Simko, I., Trent, M., Hayes, R. J. & Michelmore, R. W., Dec 1 2019, In : Molecular Breeding. 39, 12, 160.

Research output: Contribution to journalArticle

leaf spot
Lettuce
Quantitative Trait Loci
Xanthomonas campestris
lettuce
1 Citation (Scopus)

Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica

Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.

Research output: Contribution to journalArticle

Trialeurodes vaporariorum
Bemisia tabaci
Costa Rica
geographical distribution
Aleyrodidae
2 Citations (Scopus)

Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima

Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.

Research output: Contribution to journalArticle

Ailanthus
Verticillium
Agricultural Crops
Blood Vessels
Fungi

Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight

Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.

Research output: Contribution to journalArticle

Calonectria
Buxus sempervirens
composting
blight
ammonia

Impact of cultivated hosts on the recombination of cucumber mosaic virus

Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 7, e01770.

Research output: Contribution to journalArticle

Cucumovirus
Cucumber mosaic virus
Genetic Recombination
Tobacco
pepper
2 Citations (Scopus)

Inference of convergent gene acquisition among Pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash

Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradović, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, FEB, 270.

Research output: Contribution to journalArticle

Open Access
Cucumis melo
Citrullus
Pseudomonas syringae
Cucurbita
Genome
1 Citation (Scopus)

Localized recombination drives diversification of killing spectra for phage-derived syringacins

Baltrus, D. A., Clark, M., Smith, C. & Hockett, K. L., Feb 1 2019, In : ISME Journal. 13, 2, p. 237-249 13 p.

Research output: Contribution to journalArticle

Bacteriocins
bacteriocins
bacteriophages
Bacteriophages
Genetic Recombination
1 Citation (Scopus)

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, Michalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In : Phytobiomes Journal.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Manipulation of aphid behavior by a persistent plant virus

Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.

Research output: Contribution to journalArticle

Plant Viruses
Aphids
plant viruses
Aphidoidea
Cucumovirus

Mushroom sciarid fly, Lycoriella ingenua (Diptera: Sciaridae) adults and larvae vector Mushroom Green Mold (Trichoderma aggressivum ft. aggressivum) spores

Mazin, M., Harvey, R., Andreadis, S., Pecchia, J. A., Cloonan, K. & Rajotte, E. G., Jan 1 2019, (Accepted/In press) In : Applied Entomology and Zoology.

Research output: Contribution to journalArticle

Trichoderma aggressivum
Lycoriella
Sciaridae
mushrooms
molds (fungi)

Neonicotinoid seed treatments of soybean provide negligible benefits to US farmers

Mourtzinis, S., Krupke, C. H., Esker, P. D., Varenhorst, A., Arneson, N. J., Bradley, C. A., Byrne, A. M., Chilvers, M. I., Giesler, L. J., Herbert, A., Kandel, Y. R., Kazula, M. J., Hunt, C., Lindsey, L. E., Malone, S., Mueller, D. S., Naeve, S., Nafziger, E., Reisig, D. D., Ross, W. J. & 3 others, Rossman, D. R., Taylor, S. & Conley, S. P., Dec 1 2019, In : Scientific reports. 9, 1, 11207.

Research output: Contribution to journalArticle

Open Access
Soybeans
Seeds
Therapeutics
Farmers
Practice Management

Optimizing fungicide timing for the management of white mold in processing snap bean in New York

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Nov 1 2019, In : Crop Protection. 125, 104883.

Research output: Contribution to journalArticle

green beans
molds (fungi)
boscalid
fungicides
thiophanate-methyl

Parasitic Wasp Mediates Plant Perception of Insect Herbivores

Tan, C. W., Peiffer, M., Hoover, K., Rosa, C. & Felton, G. W., Dec 1 2019, In : Journal of Chemical Ecology. 45, 11-12, p. 972-981 10 p.

Research output: Contribution to journalArticle

Wasps
Glucose Oxidase
Herbivory
caterpillar
wasp

Perennial ryegrass wear resistance and soil amendment by Ca- And Mg-silicates

Pruyne, D. T., Schlossberg, M. J. & Uddin, W., Sep 25 2019, In : Agronomy. 9, 10, 578.

Research output: Contribution to journalArticle

Open Access
soil amendments
silicon
silicates
Lolium perenne
athletic fields

Physicochemical characterization of composts for the cultivation of Pleurotus ostreatus

Zanon, A. R., De Jesus, J. P. F., Vieira, F. R., Martins, O. G. & De Andrade, M. C. N., Jan 1 2019, In : Revista em Agronegocio e Meio Ambiente. 12, 3, p. 1167-1181 15 p.

Research output: Contribution to journalArticle

Open Access
Pleurotus
Pleurotus ostreatus
Agaricales
mushroom
composting

Request for revision of the statutes of the international committee on systematics of prokaryotes

Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.

Research output: Contribution to journalArticle

prokaryote
prokaryotic cells
committees
Publications
taxonomy

Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize

Galindo-Castañeda, T., Brown, K. M., Kuldau, G. A., Roth, G. W., Wenner, N. G., Ray, S., Schneider, H. & Lynch, J. P., Nov 1 2019, In : Plant Cell and Environment. 42, 11, p. 2999-3014 16 p.

Research output: Contribution to journalArticle

Zea mays
Anatomy
corn
root rot
Genotype

Secreted metabolite-mediated interactions between rhizosphere bacteria and Trichoderma biocontrol agents

Li, N., Islam, M. T. & Kang, S., Jan 1 2019, In : PloS one. 14, 12, e0227228.

Research output: Contribution to journalArticle

Open Access
Biocontrol
Rhizosphere
Trichoderma
rhizosphere bacteria
Metabolites

Staghorn Sumac (Rhus typhina): A New Bioindicator to Detect Phytotoxic Levels of Ambient Ozone in the Eastern United States

Seiler, L. K., Decoteau, D. R., Marini, R. P. & Davis, D. D., Dec 1 2019, In : Northeastern Naturalist. 26, 4, p. 807-816 10 p.

Research output: Contribution to journalArticle

Rhus typhina
Eastern United States
bioindicator
ozone
Asclepias syriaca
1 Citation (Scopus)

Survival of Lab Grown Calonectria pseudonaviculata Microsclerotia During Small-Scale Composting

Harvey, R. J., Davis, D. D., Shishkoff, N. & Pecchia, J. A., Jan 2 2019, In : Compost Science and Utilization. 27, 1, p. 24-34 11 p.

Research output: Contribution to journalArticle

Calonectria
composting
incubators (equipment)
temperature
compost
1 Citation (Scopus)

The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens

Xie, S., Wang, Y., Wei, W., Li, C., Liu, Y., Qu, J., Meng, Q., Lin, Y., Yin, W., Yang, Y. & Luo, C., Oct 1 2019, In : Current Genetics. 65, 5, p. 1185-1197 13 p.

Research output: Contribution to journalArticle

Virulence
Fungi
Cell Wall
Cell Death
Beriberi
37 Citations (Scopus)

The global burden of pathogens and pests on major food crops

Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.

Research output: Contribution to journalArticle

food crops
pathogen
pests
crop
food
Solanum tuberosum subsp. andigenum
Solanum
Phytophthora infestans
Diploidy
diploidy
1 Citation (Scopus)

Three novel Ambrosia Fusarium Clade species producing clavate macroconidia known (F. floridanum and F. obliquiseptatum) or predicted (F. tuaranense) to be farmed by Euwallacea spp. (Coleoptera: Scolytinae) on woody hosts

Aoki, T., Smith, J. A., Kasson, M. T., Freeman, S., Geiser, D. M., Geering, A. D. W. & O’Donnell, K., Nov 2 2019, In : Mycologia. 111, 6, p. 919-935 17 p.

Research output: Contribution to journalArticle

Ambrosia
Scolytidae
Beetles
Fusarium
Coleoptera

Unraveling the ecology and epidemiology of an emerging fungal disease, sea turtle egg fusariosis (STEF)

Smyth, C. W., Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondoid, J., O’donnell, K. & Geiser, D. M., May 2019, In : PLoS pathogens. 15, 5, e1007682.

Research output: Contribution to journalArticle

Open Access
Fusariosis
Turtles
Mycoses
Ecology
Ovum

Whole-genome comparisons of Penicillium spp. Reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness during apple fruit decay

Wu, G., Jurick, W. M., Lichtner, F. J., Peng, H., Yin, G., Gaskins, V. L., Yin, Y., Hua, S. S., Peter, K. A. & Bennett, J. W., Jan 1 2019, In : PeerJ. 2019, 1, e6170.

Research output: Contribution to journalArticle

Penicillium expansum
Penicillium
Patulin
Malus
Multigene Family
2018
5 Citations (Scopus)

An Erwinia amylovora yjeK mutant exhibits reduced virulence, increased chemical sensitivity and numerous environmentally dependent proteomic alterations

Klee, S. M., Mostafa, I., Chen, S., Dufresne, C., Lehman, B. L., Sinn, J. P., Peter, K. A. & McNellis, T. W., Jul 2018, In : Molecular plant pathology. 19, 7, p. 1667-1678 12 p.

Research output: Contribution to journalArticle

Erwinia amylovora
proteomics
virulence
Proteomics
Virulence
8 Citations (Scopus)
Agaricus bisporus
pasteurization
composting
bacterial communities
substrate

Bacterial gall of Loropetalum chinense caused by Pseudomonas amygdali pv. loropetali pv. nov.

Harmon, C. L., Timilsina, S., Bonkowski, J., Jones, D. D., Sun, X., Vallad, G. E., Sepulveda, L. R., Bull, C. & Jones, J. B., Apr 2018, In : Plant disease. 102, 4, p. 799-806 8 p.

Research output: Contribution to journalArticle

Pseudomonas amygdali
galls
Loropetalum
Pseudomonas syringae pv. savastanoi
pathogenicity
7 Citations (Scopus)

Canola root-Associated microbiomes in the Canadian Prairies

Lay, C. Y., Bell, T. H., Hamel, C., Harker, K. N., Mohr, R., Greer, C. W., Yergeau, É. & St-Arnaud, M., Jun 8 2018, In : Frontiers in Microbiology. 9, JUN, 1188.

Research output: Contribution to journalArticle

Microbiota
Rhizosphere
Peas
Triticum
Pedobacter
3 Citations (Scopus)

Characterization of a new apple luteovirus identified by high-throughput sequencing

Liu, H., Wu, L., Nikolaeva, E., Peter, K., Liu, Z., Mollov, D., Cao, M. & Li, R., May 15 2018, In : Virology Journal. 15, 1, 85.

Research output: Contribution to journalArticle

Luteovirus
Malus
Viruses
Polymerase Chain Reaction
Luteoviridae
Impatiens
Genes
Genome
Vegetables
Nucleotides
5 Citations (Scopus)

Coevolution of a persistent plant virus and its pepper hosts

Safari, M. & Roossinck, M. J., Jul 2018, In : Molecular Plant-Microbe Interactions. 31, 7, p. 766-776 11 p.

Research output: Contribution to journalArticle

Endornavirus
Plant Viruses
Capsicum
plant viruses
sweet peppers
5 Citations (Scopus)

Comparison of genotyping by sequencing and microsatellite markers for unravelling population structure in the clonal fungus Verticillium dahliae

Rafiei, V., Banihashemi, Z., Jiménez-Díaz, R. M., Navas-Cortés, J. A., Landa, B. B., Jiménez-Gasco, M. M., Turgeon, B. G. & Milgroom, M. G., Jan 2018, In : Plant Pathology. 67, 1, p. 76-86 11 p.

Research output: Contribution to journalArticle

Verticillium
Verticillium dahliae
Microsatellite Repeats
genotyping
population structure
5 Citations (Scopus)

Concepts, approaches, and avenues for modelling crop health and crop losses

Savary, S., Nelson, A. D., Djurle, A., Esker, P. D., Sparks, A., Amorim, L., Bergamin Filho, A., Caffi, T., Castilla, N., Garrett, K., McRoberts, N., Rossi, V., Yuen, J. & Willocquet, L., Oct 2018, In : European Journal of Agronomy. 100, p. 4-18 15 p.

Research output: Contribution to journalArticle

crop losses
crop
crops
modeling
plant diseases and disorders

Contribution of Medicago sativa to the productivity and nutritive value of forage in semi-arid grassland pastures

Klabi, R., Bell, T. H., Hamel, C., Iwaasa, A., Schellenberg, M. P. & St-Arnaud, M., Mar 2018, In : Grass and Forage Science. 73, 1, p. 159-173 15 p.

Research output: Contribution to journalArticle

nutritive value
Medicago sativa
forage
pasture
legumes
5 Citations (Scopus)

Distribution and diversity of begomoviruses in tomato and sweet pepper plants in Costa Rica

Barboza, N., Blanco-Meneses, M., Esker, P., Moriones, E. & Inoue-Nagata, A. K., Jan 2018, In : Annals of Applied Biology. 172, 1, p. 20-32 13 p.

Research output: Contribution to journalArticle

Begomovirus
sweet peppers
Costa Rica
tomatoes
Geographical Locations