Plant Pathology and Environmental Microbiology

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2017

Recommended terminology for aerobiological studies

Galán, C., Ariatti, A., Bonini, M., Clot, B., Crouzy, B., Dahl, A., Fernandez-González, D., Frenguelli, G., Gehrig, R., Isard, S., Levetin, E., Li, D. W., Mandrioli, P., Rogers, C. A., Thibaudon, M., Sauliene, I., Skjoth, C., Smith, M. & Sofiev, M., Sep 1 2017, In : Aerobiologia. 33, 3, p. 293-295 3 p.

Research output: Contribution to journalArticle

60 Scopus citations

Seed production, viability, and reproductive limits of the invasive Ailanthus altissima (tree-of-heaven) within invaded environments

Wickert, K. L., O'Neal, E. S., Davis, D. D. & Kasson, M. T., Jun 27 2017, In : Forests. 8, 7, 226.

Research output: Contribution to journalArticle

15 Scopus citations

Sensitivity and efficacy of boscalid, fluazinam, and thiophanate-methyl for white mold control in snap bean in New York

Lehner, M. S., Del Ponte, E. M., Gugino, B. K., Kikkert, J. R. & Pethybridge, S. J., Jul 2017, In : Plant disease. 101, 7, p. 1253-1258 6 p.

Research output: Contribution to journalArticle

12 Scopus citations

Soybean yield loss estimates due to diseases in the United States and Ontario, Canada, from 2010 to 2014

Allen, T. W., Bradley, C. A., Sisson, A. J., Byamukama, E., Chilvers, M. I., Coker, C. M., Collins, A. A., Damicone, J. P., Dorrance, A. E., Dufault, N. S., Esker, P. D., Faske, T. R., Giesler, L. J., Grybauskas, A. P., Hershman, D. E., Hollier, C. A., Isakeit, T., Jardine, D. J., Kelly, H. M., Kemerait, R. C. & 23 others, Kleczewski, N. M., Koenning, S. R., Kurle, J. E., Malvick, D. K., Markell, S. G., Mehl, H. L., Mueller, D. S., Mueller, J. D., Mulrooney, R. P., Nelson, B. D., Newman, M. A., Osborne, L., Overstreet, C., Padgett, G. B., Phipps, P. M., Price, P. P., Sikora, E. J., Smith, D. L., Spurlock, T. N., Tande, C. A., Tenuta, A. U., A.Wise, K. & Allen Wrather, J., Jan 1 2017, In : Plant Health Progress. 18, 1, p. 19-27 9 p.

Research output: Contribution to journalArticle

69 Scopus citations

Symbiosis: Viruses as Intimate Partners

Roossinck, M. J. & Bazán, E. R., Sep 29 2017, In : Annual Review of Virology. 4, p. 123-139 17 p.

Research output: Contribution to journalArticle

18 Scopus citations

Tritrophic Interactions: Microbe-Mediated Plant Effects on Insect Herbivores

Shikano, I., Rosa, C., Tan, C. W. & Felton, G. W., Aug 4 2017, In : Annual Review of Phytopathology. 55, p. 313-331 19 p.

Research output: Contribution to journalArticle

53 Scopus citations

Use of the soft-agar overlay technique to screen for bacterially produced inhibitory compounds

Hockett, K. L. & Baltrus, D. A., Jan 14 2017, In : Journal of Visualized Experiments. 2017, 119, e55064.

Research output: Contribution to journalArticle

22 Scopus citations

Variation of pathotypes and races and their correlations with clonal lineages in Verticillium dahliae

Jiménez-Díaz, R. M., Olivares-García, C., Trapero-Casas, J. L., Jiménez-Gasco, M. M., Navas-Cortés, J. A., Landa, B. B. & Milgroom, M. G., May 1 2017, In : Plant Pathology. 66, 4, p. 651-666 16 p.

Research output: Contribution to journalArticle

12 Scopus citations

Within gut physicochemical variation does not correspond to distinct resident fungal and bacterial communities in the tree-killing xylophage, Anoplophora glabripennis

Mason, C. J., Long, D. C., McCarthy, E. M., Nagachar, N., Rosa, C., Scully, E. D., Tien, M. & Hoover, K., Oct 2017, In : Journal of Insect Physiology. 102, p. 27-35 9 p.

Research output: Contribution to journalArticle

3 Scopus citations
2016

A diverse soil microbiome degrades more crude oil than specialized bacterial assemblages obtained in culture

Bell, T. H., Stefani, F. O. P., Abram, K., Champagne, J., Yergeau, E., Hijri, M. & St-Arnaud, M., Jan 1 2016, In : Applied and environmental microbiology. 82, 18, p. 5530-5541 12 p.

Research output: Contribution to journalArticle

16 Scopus citations

Angular leaf spot of cucurbits is associated with genetically diverse pseudomonas syringae strains

Newberry, E. A., Jardini, T. M., Rubio, I., Roberts, P. D., Babu, B., Koike, S. T., Bouzar, H., Goss, E. M., Jones, J. B., Bull, C. T. & Paret, M. L., Jul 2016, In : Plant disease. 100, 7, p. 1397-1404 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

A physically based theoretical model of spore deposition for predicting spread of plant diseases

Isard, S. A. & Chamecki, M., Mar 1 2016, In : Phytopathology. 106, 3, p. 244-253 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Clonal expansion and migration of a highly virulent, defoliating lineage of Verticillium dahliae

Milgroom, M. G., Jiménez-Gasco, M. D. M., Olivares-García, C. & Jiménez-Díaz, R. M., Sep 2016, In : PHYTOPATHOLOGY. 106, 9, p. 1038-1046 9 p.

Research output: Contribution to journalArticle

16 Scopus citations

Comparison of small RNA profiles in Nicotiana benthamiana and Solanum lycopersicum infected by polygonum ringspot tospovirus reveals host-specific responses to viral infection

Margaria, P., Miozzi, L., Ciuffo, M., Rosa, C., Axtell, M., Pappu, H. R. & Turina, M., Jan 4 2016, In : Virus Research. 211, p. 38-45 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Corn yield loss estimates due to diseases in the United States and Ontario, Canada from 2012 to 2015

Mueller, D. S., Wise, K. A., Sisson, A. J., Allen, T. W., Bergstrom, G. C., Bosley, D. B., Bradley, C. A., Broders, K. D., Byamukama, E., Chilvers, M. I., Collins, A., Faske, T. R., Friskop, A. J., Heiniger, R. W., Hollier, C. A., Hooker, D. C., Isakeit, T., Jackson-Ziems, T. A., Jardine, D. J., Kelly, H. M. & 13 others, Kinzer, K., Koenning, S. R., Malvick, D. K., McMullen, M., Meyer, R. F., Paul, P. A., Robertson, A. E., Roth, G. W., Smith, D. L., Tande, C. A., Tenuta, A. U., Vincelli, P. & Warner, F., Jan 1 2016, In : Plant Health Progress. 17, 3, p. 211-222 12 p.

Research output: Contribution to journalArticle

36 Scopus citations

Dynamics of Physicochemical Variables and Cultivable Bacteria in Vermicompost during Steady Food Waste Addition and Upon Feed Interruption

Hénault-Ethier, L., Bell, T., Martin, V. J. J. & Gélinas, Y., Apr 2 2016, In : Compost Science and Utilization. 24, 2, p. 117-135 19 p.

Research output: Contribution to journalArticle

4 Scopus citations

Effects of spent mushroom compost (SMC) as an ingredient in phase I compost on production of Agaricus bisporus

Bishop, E. L., Pecchia, J. A., Wilkinson, V., Albert, I. & Royse, D. J., Jan 1 2016, In : Compost Science and Utilization. 24, 4, p. 246-258 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Efficacy of Beauveria bassiana formulations against the fungus gnat Lycoriella ingenua

Andreadis, S. S., Cloonan, K. R., Bellicanta, G. S., Paley, K., Pecchia, J. & Jenkins, N. E., Dec 1 2016, In : Biological Control. 103, p. 165-171 7 p.

Research output: Contribution to journalArticle

5 Scopus citations

Epitypification of Fusisporium (Fusarium) solani and its assignment to a common phylogenetic species in the Fusarium solani species complex

Schroers, H. J., Samuels, G. J., Zhang, N., Short, D. P. G., Juba, J. & Geiser, D. M., Jan 1 2016, In : Mycologia. 108, 4, p. 806-819 14 p.

Research output: Contribution to journalArticle

38 Scopus citations

Essential amino acid supplementation by gut microbes of a wood-feeding cerambycid

Ayayee, P. A., Larsen, T., Rosa, C., Felton, G. W., Ferry, J. G. & Hoover, K., Feb 1 2016, In : Environmental entomology. 45, 1, p. 66-73 8 p.

Research output: Contribution to journalArticle

18 Scopus citations

Ethylene biosynthesis and signaling is required for rice immune response and basal resistance against Magnaporthe oryzae infection

Helliwell, E. E., Wang, Q. & Yang, Y., Nov 2016, In : Molecular Plant-Microbe Interactions. 29, 11, p. 831-843 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Evolution of Nine Microsatellite Loci in the Fungus Fusarium oxysporum

Demers, J. E. & Jiménez-Gasco, M. D. M., Jan 1 2016, In : Journal Of Molecular Evolution. 82, 1, p. 27-37 11 p.

Research output: Contribution to journalArticle

4 Scopus citations

First report of White clover mosaic virus and turnip mosaic virus mixed infection on garlic mustard in Pennsylvania

Zhao, K., Margaria, P. & Rosa, C., Apr 2016, In : Plant disease. 100, 4, 1 p.

Research output: Contribution to journalArticle

Genetic variation within clonal lineages of phytophthora infestans revealed through genotyping-by-sequencing, and implications for late blight epidemiology

Hansen, Z. R., Everts, K. L., Fry, W. E., Gevens, A. J., Grünwald, N. J., Gugino, B. K., Johnson, D. A., Johnson, S. B., Judelson, H. S., Knaus, B. J., McGrath, M. T., Myers, K. L., Ristaino, J. B., Roberts, P. D., Secor, G. A. & Smart, C. D., Nov 2016, In : PloS one. 11, 11, e0165690.

Research output: Contribution to journalArticle

6 Scopus citations

Genome sequence of fusarium isolate MYA-4552 from the midgut of Anoplophora glabripennis, an invasive, wood-boring beetle

Herr, J. R., Scully, E. D., Geib, S. M., Hoover, K., Carlson, J. E. & Geiser, D. M., Jan 1 2016, In : Genome Announcements. 4, 4, e00544-16.

Research output: Contribution to journalArticle

6 Scopus citations

Herbivore Oral Secreted Bacteria Trigger Distinct Defense Responses in Preferred and Non-Preferred Host Plants

Wang, J., Chung, S. H., Peiffer, M., Rosa, C., Hoover, K., Zeng, R. & Felton, G. W., Jun 1 2016, In : Journal of Chemical Ecology. 42, 6, p. 463-474 12 p.

Research output: Contribution to journalArticle

17 Scopus citations

Host-specific accumulation and temperature effects on the generation of dimeric viral RNA species derived from the S-RNA of members of the Tospovirus genus

Bertran, A., Ciuffo, M., Margaria, P., Rosa, C., Resende, R. O. & Turina, M., Nov 2016, In : Journal of General Virology. 97, 11, p. 3051-3062 12 p., 000598.

Research output: Contribution to journalArticle

3 Scopus citations
3 Scopus citations

Isolation of endohyphal bacteria from foliar Ascomycota and In Vitro establishment of their symbiotic associations

Arendt, K. R., Hockett, K. L., Araldi-Brondolo, S. J., Baltrus, D. A. & Arnold, A. E., May 1 2016, In : Applied and environmental microbiology. 82, 10, p. 2943-2949 7 p.

Research output: Contribution to journalArticle

22 Scopus citations

Kingdom-wide analysis of fungal small secreted proteins (SSPs) reveals their potential role in host association

Kim, K. T., Jeon, J., Choi, J., Cheong, K., Song, H., Choi, G., Kang, S. & Lee, Y. H., Feb 19 2016, In : Frontiers in Plant Science. 7, FEB2016, 186.

Research output: Contribution to journalArticle

57 Scopus citations

Late Blight and Early Blight Resistance from Solanum hougasii Introgressed Into Solanum tuberosum

Haynes, K. G. & Qu, X., Feb 1 2016, In : American Journal of Potato Research. 93, 1, p. 86-95 10 p.

Research output: Contribution to journalArticle

5 Scopus citations

Modeling the decision process for barley yellow dwarf management

Walls, J. T., Caciagli, P., Tooker, J. F., Russo, J. M., Rajotte, E. G. & Rosa, C., Sep 1 2016, In : Computers and Electronics in Agriculture. 127, p. 775-786 12 p.

Research output: Contribution to journalArticle

5 Scopus citations

Multilocus sequence typing of strains of bacterial spot of lettuce collected in the United States

Fayette, J., Raid, R., Roberts, P. D., Jones, J. B., Pernezny, K., Bull, C. T. & Goss, E. M., Jan 1 2016, In : PHYTOPATHOLOGY. 106, 11, p. 1262-1269 8 p.

Research output: Contribution to journalArticle

4 Scopus citations
12 Scopus citations

Phylogenetic resolution of deep eukaryotic and fungal relationships using highly conserved low-copy nuclear genes

Ren, R., Sun, Y., Zhao, Y., Geiser, D., Ma, H. & Zhou, X., Jan 1 2016, In : Genome biology and evolution. 8, 9, p. 2683-2701 19 p.

Research output: Contribution to journalArticle

14 Scopus citations

Sequence-based classification and identification of Fungi

Hibbett, D., Abarenkov, K., Kõljalg, U., Öpik, M., Chai, B., Cole, J., Wang, Q., Crous, P., Robert, V., Helgason, T., Herr, J. R., Kirk, P., Lueschow, S., O’Donnell, K., Nilsson, R. H., Oono, R., Schoch, C., Smyth, C., Walker, D. M., Porras-Alfaro, A. & 2 others, Taylor, J. W. & Geiser, D. M., Nov 1 2016, In : Mycologia. 108, 6, p. 1049-1068 20 p.

Research output: Contribution to journalArticle

67 Scopus citations

Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice

Lu, W., Deng, M., Guo, F., Wang, M., Zeng, Z., Han, N., Yang, Y., Zhu, M. & Bian, H., Dec 1 2016, In : Rice. 9, 1, 65.

Research output: Contribution to journalArticle

8 Scopus citations

The miR393a/target module regulates seed germination and seedling establishment under submergence in rice (Oryza sativa L.)

Guo, F., Han, N., Xie, Y., Fang, K., Yang, Y., Zhu, M., Wang, J. & Bian, H., Oct 1 2016, In : Plant Cell and Environment. 39, 10, p. 2288-2302 15 p.

Research output: Contribution to journalArticle

10 Scopus citations

Using a Novel Partitivirus in Pseudogymnoascus destructans to Understand the Epidemiology of White-Nose Syndrome

Thapa, V., Turner, G. G., Hafenstein, S., Overton, B. E., Vanderwolf, K. J. & Roossinck, M. J., Dec 27 2016, In : PLoS pathogens. 12, 12, e1006076.

Research output: Contribution to journalArticle

10 Scopus citations

Veterinary fusarioses within the United States

O'Donnell, K., Sutton, D. A., Wiederhold, N., Robert, V. A. R. G., Crous, P. W. & Geiser, D. M., Nov 2016, In : Journal of clinical microbiology. 54, 11, p. 2813-2819 7 p.

Research output: Contribution to journalArticle

20 Scopus citations
2015

A new look at plant viruses and their potential beneficial roles in crops

Roossinck, M. J., May 1 2015, In : Molecular plant pathology. 16, 4, p. 331-333 3 p.

Research output: Contribution to journalArticle

12 Scopus citations

A unifying gravity framework for dispersal

Jongejans, E., Skarpaas, O., Ferrari, M. J., Long, E. S., Dauer, J. T., Schwarz, C. M., Rauschert, E. S. J., Jabbour, R., Mortensen, D. A., Isard, S. A., Lieb, D. A., Sezen, Z., Hulting, A. G. & Shea, K., Dec 13 2015, In : Theoretical Ecology. 8, 2, p. 207-223 17 p.

Research output: Contribution to journalArticle

11 Scopus citations
5 Scopus citations

Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system

Xie, K., Minkenberg, B. & Yang, Y., Mar 17 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. 3570-3575 6 p.

Research output: Contribution to journalArticle

356 Scopus citations

Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages

Elmore, M. H., McGary, K. L., Wisecaver, J. H., Slot, J. C., Geiser, D. M., Sink, S., O'Donnell, K. & Rokas, A., Jan 1 2015, In : Genome biology and evolution. 7, 3, p. 789-800 12 p.

Research output: Contribution to journalArticle

19 Scopus citations

Comparison of pathogenic variation among phakopsora pachyrhizi isolates collected from the United States and International locations, and identification of soybean genotypes resistant to the U.S. isolates

Paul, C., Frederick, R. D., Hill, C. B., Hartman, G. L. & Walker, D. R., Jan 1 2015, In : Plant disease. 99, 8, p. 1059-1069 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Comprehensive sampling of an isolated dune system demonstrates clear patterns in soil fungal communities across a successional gradient

Roy-Bolduc, A., Bell, T. H., Boudreau, S. & Hijri, M., Dec 1 2015, In : Environmental Microbiology Reports. 7, 6, p. 839-848 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Culture-dependent and -independent methods capture different microbial community fractions in hydrocarbon-contaminated soils

Stefani, F. O. P., Bell, T. H., Marchand, C., De La Providencia, I. E., El Yassimi, A., St-Arnaud, M. & Hijri, M., Jun 8 2015, In : PloS one. 10, 6, e0128272.

Research output: Contribution to journalArticle

59 Scopus citations

Development of a transformation system for Hirsutella spp. and visualization of the mode of nematode infection by GFP-labeled H. minnesotensis

Sun, J., Park, S. Y., Kang, S., Liu, X., Qiu, J. & Xiang, M., Jul 20 2015, In : Scientific reports. 5, 10477.

Research output: Contribution to journalArticle

4 Scopus citations

Differential responses to virus challenge of laboratory and wild accessions of Australian species of Nicotiana, and comparative analysis of RDR1 gene sequences

Wylie, S. J., Zhang, C., Long, V., Roossinck, M. J., Koh, S. H., Jones, M. G. K., Iqbal, S. & Li, H., Mar 30 2015, In : PloS one. 10, 3, e0121787.

Research output: Contribution to journalArticle

18 Scopus citations