Plant Pathology and Environmental Microbiology

  • United States

Research Output 1974 2020

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17 Citations (Scopus)

Classification, nomenclature, and plant pathogenic bacteria - A clarification

Young, J. M., Bull, C. T., De Boer, S. H., Firrao, G., Gardan, L., Saddler, G. E., Stead, D. E. & Takikawa, Y., Jan 1 2001, In : PHYTOPATHOLOGY. 91, 7, p. 617-620 4 p.

Research output: Contribution to journalArticle

Xanthomonas
plant pathogenic bacteria
plant pathology
Pseudomonas
taxonomy
156 Citations (Scopus)

Clavicipitaceous endophytes: Their ability to enhance resistance of grasses to multiple stresses

Kuldau, G. & Bacon, C., Jul 1 2008, In : Biological Control. 46, 1, p. 57-71 15 p.

Research output: Contribution to journalArticle

endophytes
grasses
fungi
biotic stress
abiotic stress
15 Citations (Scopus)

Clonal expansion and migration of a highly virulent, defoliating lineage of Verticillium dahliae

Milgroom, M. G., Jiménez-Gasco, M. D. M., Olivares-García, C. & Jiménez-Díaz, R. M., Sep 2016, In : PHYTOPATHOLOGY. 106, 9, p. 1038-1046 9 p.

Research output: Contribution to journalArticle

Verticillium dahliae
defoliation
single nucleotide polymorphism
haplotypes
Southwestern United States
22 Citations (Scopus)
Fusarium
recombination
hybridization
pathogen
loci
64 Citations (Scopus)
Verticillium
Agrobacterium tumefaciens
Trypsin
Blood Vessels
Organism Cloning
19 Citations (Scopus)

Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages

Elmore, M. H., McGary, K. L., Wisecaver, J. H., Slot, J. C., Geiser, D. M., Sink, S., O'Donnell, K. & Rokas, A., Jan 1 2015, In : Genome biology and evolution. 7, 3, p. 789-800 12 p.

Research output: Contribution to journalArticle

cyanates
Cyanates
Multigene Family
detoxification
multigene family
19 Citations (Scopus)

Co-divergence and host-switching in the evolution of tobamoviruses

Stobbe, A. H., Melcher, U., Palmer, M. W., Roossinck, M. J. & Shen, G., Feb 1 2012, In : Journal of General Virology. 93, 2, p. X408-418

Research output: Contribution to journalArticle

Tobamovirus
Mosaic Viruses
Fruit
Viruses
Bayes Theorem
5 Citations (Scopus)

Coevolution of a persistent plant virus and its pepper hosts

Safari, M. & Roossinck, M. J., Jul 2018, In : Molecular Plant-Microbe Interactions. 31, 7, p. 766-776 11 p.

Research output: Contribution to journalArticle

Endornavirus
Plant Viruses
Capsicum
plant viruses
sweet peppers
15 Citations (Scopus)

Colorado potato beetle manipulates plant defenses in local and systemic leaves

Chung, S. H., Rosa, C., Hoover, K., Luthe, D. S. & Felton, G. W., Jan 1 2013, In : Plant Signaling and Behavior. 8, 12, e27592.

Research output: Contribution to journalArticle

Leptinotarsa decemlineata
herbivores
bacteria
leaves
host plants
37 Citations (Scopus)

Comparative analysis of expressed sequences reveals a conserved pattern of optimal codon usage in plants

Wang, L. & Roossinck, M. J., Jul 1 2006, In : Plant molecular biology. 61, 4-5, p. 699-710 12 p.

Research output: Contribution to journalArticle

conserved sequences
codons
Codon
Sequence Analysis
Liliopsida

Comparative analysis uncovers the limitations of current molecular detection methods for Fusarium oxysporum f. Sp. Cubense Race 4 strains

Magdama, F., Monserrate-Maggi, L., Serrano, L., Sosa, D., Geiser, D. M. & Jiménez-Gasco, M. D. M., Jan 1 2019, In : PloS one. 14, 9, e0222727.

Research output: Contribution to journalArticle

Open Access
Musa
Fusarium
Pathogens
Fusarium oxysporum
bananas
12 Citations (Scopus)

Comparative genetic analysis of Magnaporthe oryzae isolates causing gray leaf spot of perennial ryegrass turf in the United States and Japan

Tosa, Y., Uddin, W., Viji, G., Kang, S. & Mayama, S., May 1 2007, In : Plant disease. 91, 5, p. 517-524 8 p.

Research output: Contribution to journalArticle

leaf spot
Magnaporthe oryzae
lawns and turf
Lolium perenne
genetic techniques and protocols
22 Citations (Scopus)

Comparative Genomics of Multiple Strains of Pseudomonas cannabina pv. alisalensis, a Potential Model Pathogen of Both Monocots and Dicots

Sarris, P. F., Trantas, E. A., Baltrus, D. A., Bull, C. T., Wechter, W. P., Yan, S., Ververidis, F., Almeida, N. F., Jones, C. D., Dangl, J. L., Panopoulos, N. J., Vinatzer, B. A. & Goumas, D. E., Mar 28 2013, In : PloS one. 8, 3, e59366.

Research output: Contribution to journalArticle

Pathogens
Genomics
Pseudomonas
Magnoliopsida
Liliopsida
781 Citations (Scopus)

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Ma, L. J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M. J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W. B., Woloshuk, C., Xie, X., Xu, J. R., Antoniw, J., Baker, S. E., Bluhm, B. H., Breakspear, A. & 43 others, Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P. M., Danchin, E. G. J., Diener, A., Gale, L. R., Gardiner, D. M., Goff, S., Hammond-Kosack, K. E., Hilburn, K., Hua-Van, A., Jonkers, W., Kazan, K., Kodira, C. D., Koehrsen, M., Kumar, L., Lee, Y. H., Li, L., Manners, J. M., Miranda-Saavedra, D., Mukherjee, M., Park, G., Park, J., Park, S. Y., Proctor, R. H., Regev, A., Ruiz-Roldan, M. C., Sain, D., Sakthikumar, S., Sykes, S., Schwartz, D. C., Turgeon, B. G., Wapinski, I., Yoder, O., Young, S., Zeng, Q., Zhou, S., Galagan, J., Cuomo, C. A., Kistler, H. C. & Rep, M., Mar 18 2010, In : Nature. 464, 7287, p. 367-373 7 p.

Research output: Contribution to journalArticle

Fusarium
Genomics
Virulence
Chromosomes
Genome
239 Citations (Scopus)

Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

Klosterman, S. J., Subbarao, K. V., Kang, S., Veronese, P., Gold, S. E., Thomma, B. P. H. J., Chen, Z., Henrissat, B., Lee, Y. H., Park, J., Garcia-Pedrajas, M. D., Barbara, D. J., Anchieta, A., de Jonge, R., Santhanam, P., Maruthachalam, K., Atallah, Z., Amyotte, S. G., Paz, Z., Inderbitzin, P. & 9 others, Hayes, R. J., Heiman, D. I., Young, S., Zeng, Q., Engels, R., Galagan, J., Cuomo, C. A., Dobinson, K. F. & Ma, L. J., Jul 1 2011, In : PLoS pathogens. 7, 7, e1002137.

Research output: Contribution to journalArticle

Verticillium
Genomics
Blood Vessels
Virulence
Glucosyltransferases
19 Citations (Scopus)

Comparative pathogenicity, biocontrol efficacy, and multilocus sequence typing of Verticillium nonalfalfae from the invasive Ailanthus altissima and other hosts

Kasson, M. T., Short, D. P. G., O'Neal, E. S., Subbarao, K. V. & Davis, D. D., Mar 1 2014, In : PHYTOPATHOLOGY. 104, 3, p. 282-292 11 p.

Research output: Contribution to journalArticle

Ailanthus
Ailanthus altissima
Verticillium
biological control
pathogenicity
15 Citations (Scopus)

Comparative susceptibilities of legume species to infection by Phakopsora pachyrhizi

Bonde, M. R., Nester, S. E., Berner, D. K., Frederick, R. D., Moore, W. F. & Little, S., Jan 1 2008, In : Plant disease. 92, 1, p. 30-36 7 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
lesions (plant)
legumes
Pueraria montana var. lobata
infection
36 Citations (Scopus)

Comparison of effects of acidic electrolyzed water and NaOCl on Tilletia indica teliospore germination

Bonde, M. R., Nester, S. E., Khayat, A., Smilanick, J. L., Frederick, R. D. & Schaad, N. W., Jul 1999, In : Plant disease. 83, 7, p. 627-632 6 p.

Research output: Contribution to journalArticle

Tilletia indica
teliospores
germination
polymerase chain reaction
sterilizing
5 Citations (Scopus)

Comparison of genotyping by sequencing and microsatellite markers for unravelling population structure in the clonal fungus Verticillium dahliae

Rafiei, V., Banihashemi, Z., Jiménez-Díaz, R. M., Navas-Cortés, J. A., Landa, B. B., Jiménez-Gasco, M. M., Turgeon, B. G. & Milgroom, M. G., Jan 2018, In : Plant Pathology. 67, 1, p. 76-86 11 p.

Research output: Contribution to journalArticle

Verticillium
Verticillium dahliae
Microsatellite Repeats
genotyping
population structure
18 Citations (Scopus)

Comparison of models for forecasting of Stewart's disease of corn in Iowa

Esker, P., Harri, J., Dixon, P. M. & Nutter, F. W., Oct 1 2006, In : Plant disease. 90, 10, p. 1353-1357 5 p.

Research output: Contribution to journalArticle

corn
disease prevalence
air temperature
Pantoea stewartii subsp. stewartii
leaf blight
9 Citations (Scopus)

Comparison of pathogenic variation among phakopsora pachyrhizi isolates collected from the United States and International locations, and identification of soybean genotypes resistant to the U.S. isolates

Paul, C., Frederick, R. D., Hill, C. B., Hartman, G. L. & Walker, D. R., Jan 1 2015, In : Plant disease. 99, 8, p. 1059-1069 11 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybeans
virulence
genotype
principal component analysis
65 Citations (Scopus)

Comparison of QTL controlling seedling vigour under different temperature conditions using recombinant inbred lines in rice (Oryza sativa)

Zhang, Z. H., Qu, X. S., Wan, S., Chen, L. H. & Zhu, Y. G., Sep 12 2005, In : Annals of botany. 95, 3, p. 423-429 7 p.

Research output: Contribution to journalArticle

inbred lines
vigor
quantitative trait loci
Oryza sativa
rice
12 Citations (Scopus)

Comparison of small RNA profiles in Nicotiana benthamiana and Solanum lycopersicum infected by polygonum ringspot tospovirus reveals host-specific responses to viral infection

Margaria, P., Miozzi, L., Ciuffo, M., Rosa, C., Axtell, M., Pappu, H. R. & Turina, M., Jan 4 2016, In : Virus Research. 211, p. 38-45 8 p.

Research output: Contribution to journalArticle

Tospovirus
Polygonum
Virus Diseases
Lycopersicon esculentum
Tobacco
18 Citations (Scopus)

Complex molecular relationship between vegetative compatibility groups (VCGs) in verticillium dahliae: VCGs do not always align with clonal lineages

Jiménez-Gasco, M. D. M., Malcolm, G. M., Berbegal, M., Armengol, J. & Jiménez-Díaz, R. M., Jun 2014, In : PHYTOPATHOLOGY. 104, 6, p. 650-659 10 p.

Research output: Contribution to journalArticle

Verticillium dahliae
phylogeny
intergenic DNA
vascular wilt
Verticillium
59 Citations (Scopus)

Comprehensive assessment of soil quality for landscape and urban management

Schindelbeck, R. R., van Es, H. M., Abawi, G. S., Wolfe, D. W., Whitlow, T. L., Gugino, B. K., Idowu, O. J. & Moebius-Clune, B. N., Dec 1 2008, In : Landscape and Urban Planning. 88, 2-4, p. 73-80 8 p.

Research output: Contribution to journalArticle

soil quality
soil
cost
landscape planning
urban management
4 Citations (Scopus)

Comprehensive sampling of an isolated dune system demonstrates clear patterns in soil fungal communities across a successional gradient

Roy-Bolduc, A., Bell, T. H., Boudreau, S. & Hijri, M., Dec 1 2015, In : Environmental Microbiology Reports. 7, 6, p. 839-848 10 p.

Research output: Contribution to journalArticle

soil fungi
dunes
dune
Soil
sampling
144 Citations (Scopus)

Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants

Xu, P., Zhang, Y., Kang, L., Roossinck, M. J. & Mysore, K. S., Oct 1 2006, In : Plant physiology. 142, 2, p. 429-440 12 p.

Research output: Contribution to journalArticle

RNA Interference
RNA interference
Gene Silencing
gene silencing
small interfering RNA
5 Citations (Scopus)

Concepts, approaches, and avenues for modelling crop health and crop losses

Savary, S., Nelson, A. D., Djurle, A., Esker, P., Sparks, A., Amorim, L., Bergamin Filho, A., Caffi, T., Castilla, N., Garrett, K., McRoberts, N., Rossi, V., Yuen, J. & Willocquet, L., Oct 1 2018, In : European Journal of Agronomy. 100, p. 4-18 15 p.

Research output: Contribution to journalArticle

crop losses
crop
crops
modeling
plant diseases and disorders
173 Citations (Scopus)

Consensus statement: Virus taxonomy in the age of metagenomics

Simmonds, P., Adams, M. J., Benk, M., Breitbart, M., Brister, J. R., Carstens, E. B., Davison, A. J., Delwart, E., Gorbalenya, A. E., Harrach, B., Hull, R., King, A. M. Q., Koonin, E. V., Krupovic, M., Kuhn, J. H., Lefkowitz, E. J., Nibert, M. L., Orton, R., Roossinck, M. J., Sabanadzovic, S. & 6 others, Sullivan, M. B., Suttle, C. A., Tesh, R. B., Van Der Vlugt, R. A., Varsani, A. & Zerbini, F. M., Feb 13 2017, In : Nature Reviews Microbiology. 15, 3, p. 161-168 8 p.

Research output: Contribution to journalArticle

Metagenomics
Viruses
Quality Control
Education
18 Citations (Scopus)
Sinorhizobium meliloti
Rhizobium
Medicago sativa
Insertional Mutagenesis
Genes
52 Citations (Scopus)

Contamination of fresh and ensiled maize by multiple Penicillium mycotoxins

Mansfield, M. A., Jones, A. D. & Kuldau, G. A., Mar 1 2008, In : PHYTOPATHOLOGY. 98, 3, p. 330-336 7 p.

Research output: Contribution to journalArticle

Penicillium
mycotoxins
toxins
corn
patulin
22 Citations (Scopus)

Contrasting the community structure of arbuscular mycorrhizal fungi from hydrocarbon-contaminated and uncontaminated soils following willow (Salix spp. L.) planting

Hassan, S. E. D., Bell, T. H., Stefani, F. O. P., Denis, D., Hijri, M. & St-Arnaud, M., Jul 17 2014, In : PloS one. 9, 7, e102838.

Research output: Contribution to journalArticle

Salix
Hydrocarbons
Fungi
mycorrhizal fungi
hydrocarbons

Contribution of Medicago sativa to the productivity and nutritive value of forage in semi-arid grassland pastures

Klabi, R., Bell, T. H., Hamel, C., Iwaasa, A., Schellenberg, M. P. & St-Arnaud, M., Mar 2018, In : Grass and Forage Science. 73, 1, p. 159-173 15 p.

Research output: Contribution to journalArticle

nutritive value
Medicago sativa
forage
pasture
legumes
23 Citations (Scopus)

Conyza canadensis seed ascent in the lower atmosphere

Dauer, J. T., Mortensen, D., Luschei, E. C., Isard, S. A., Shields, E. & Van-Gessel, M. J., Mar 11 2009, In : Agricultural and Forest Meteorology. 149, 3-4, p. 526-534 9 p.

Research output: Contribution to journalArticle

Conyza canadensis
seed
atmosphere
seeds
surface layer
14 Citations (Scopus)

Core promoter for initiation of Cucumber mosaic virus subgenomic RNA4A

Sivakumaran, K., Chen, M. H., Roossinck, M. J. & Kao, C. C., Mar 4 2002, In : Molecular plant pathology. 3, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

Cucumovirus
Cucumber mosaic virus
RNA
virus
promoter regions
33 Citations (Scopus)

Corn yield loss estimates due to diseases in the United States and Ontario, Canada from 2012 to 2015

Mueller, D. S., Wise, K. A., Sisson, A. J., Allen, T. W., Bergstrom, G. C., Bosley, D. B., Bradley, C. A., Broders, K. D., Byamukama, E., Chilvers, M. I., Collins, A., Faske, T. R., Friskop, A. J., Heiniger, R. W., Hollier, C. A., Hooker, D. C., Isakeit, T., Jackson-Ziems, T. A., Jardine, D. J., Kelly, H. M. & 13 others, Kinzer, K., Koenning, S. R., Malvick, D. K., McMullen, M., Meyer, R. F., Paul, P. A., Robertson, A. E., Roth, G. W., Smith, D. L., Tande, C. A., Tenuta, A. U., Vincelli, P. & Warner, F., Jan 1 2016, In : Plant Health Progress. 17, 3, p. 211-222 12 p.

Research output: Contribution to journalArticle

Ontario
Canada
corn
leaf spot
research policy
7 Citations (Scopus)

Crop health and its global impacts on the components of food security

Savary, S., Bregaglio, S., Willocquet, L., Gustafson, D., Mason D’Croz, D., Sparks, A., Castilla, N., Djurle, A., Allinne, C., Sharma, M., Rossi, V., Amorim, L., Bergamin, A., Yuen, J., Esker, P., McRoberts, N., Avelino, J., Duveiller, E., Koo, J. & Garrett, K., Apr 1 2017, In : Food Security. 9, 2, p. 311-327 17 p.

Research output: Contribution to journalArticle

food defense
Food Supply
Plant Diseases
plant diseases and disorders
food security
45 Citations (Scopus)

Crop sequences for managing cereal cyst nematode and fungal pathogens of winter wheat

Smiley, R. W., Ingham, R. E., Uddin, W. & Cook, G. H., Jan 1 1994, In : Plant disease. 78, 12, p. 1142-1149 8 p.

Research output: Contribution to journalArticle

cyst nematodes
cropping sequence
winter wheat
pathogens
408 Citations (Scopus)

Cryptic speciation and recombination in the aflatoxin-producing fungus Aspergillus flavus

Geiser, D. M., Pitt, J. I. & Taylor, J. W., Jan 6 1998, In : Proceedings of the National Academy of Sciences of the United States of America. 95, 1, p. 388-393 6 p.

Research output: Contribution to journalArticle

Aspergillus flavus
Aflatoxins
Genetic Recombination
Fungi
Genealogy and Heraldry
588 Citations (Scopus)

Cucumber MOSAIC virus

Palukaitis, P., Roossinck, M. J., Dietzgen, R. G. & Francki, R. I. B., Jan 1 1992, In : Advances in virus research. 41, C, p. 281-348 68 p.

Research output: Contribution to journalArticle

Cucumovirus
Cucumis sativus
Viruses
Complementary DNA
Cucumber Mosaic Virus Satellite
58 Citations (Scopus)

Cucumber mosaic virus, a model for RNA virus evolution

Roossinck, M. J., Jun 26 2001, In : Molecular plant pathology. 2, 2, p. 59-63 5 p.

Research output: Contribution to journalArticle

Cucumovirus
Cucumber mosaic virus
RNA Viruses
RNA
virus
61 Citations (Scopus)

Cucumber mosaic virus D satellite RNA-induced programmed cell death in tomato

Xu, P. & Roossinck, M. J., Jul 1 2000, In : Plant Cell. 12, 7, p. 1079-1092 14 p.

Research output: Contribution to journalArticle

Cucumber Mosaic Virus Satellite
satellite RNA
Cucumber mosaic virus
Lycopersicon esculentum
Satellite RNAs
20 Citations (Scopus)

Cucumovirus isolation and RNA extraction.

Roossinck, M. J. & White, P. S., 1998, In : Methods in molecular biology (Clifton, N.J.). 81, p. 189-196 8 p.

Research output: Contribution to journalArticle

Cucumovirus
Genetic Techniques
Virology
Viral RNA
RNA
12 Citations (Scopus)

Culturable bacteria from plum fruit surfaces and their potential for controlling brown rot after harvest

Janisiewicz, W. J., Jurick, W. M., Vico, I., Peter, K. A. & Buyer, J. S., Feb 1 2013, In : Postharvest Biology and Technology. 76, p. 145-151 7 p.

Research output: Contribution to journalArticle

plums
Fruit
antagonists
Bacteria
Curtobacterium
55 Citations (Scopus)

Culture-dependent and -independent methods capture different microbial community fractions in hydrocarbon-contaminated soils

Stefani, F. O. P., Bell, T. H., Marchand, C., De La Providencia, I. E., El Yassimi, A., St-Arnaud, M. & Hijri, M., Jun 8 2015, In : PloS one. 10, 6, e0128272.

Research output: Contribution to journalArticle

Otus
Hydrocarbons
polluted soils
microbial communities
hydrocarbons
41 Citations (Scopus)

Cyber infrastructure for Fusarium: Three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing

Park, B., Park, J., Cheong, K. C., Choi, J., Jung, K., Kim, D., Lee, Y. H., Ward, T. J., O'Donnell, K., Geiser, D. M. & Kang, S., Jan 1 2011, In : Nucleic acids research. 39, SUPPL. 1, p. D640-D646

Research output: Contribution to journalArticle

Fusarium
Genomics
Genome
3 Citations (Scopus)

Cyclaneusma needlecast and needle retention in scots pine

Merrill, W. & Wenner, N. G., Jan 1 1996, In : Plant Disease. 80, 3, p. 294-298 5 p.

Research output: Contribution to journalArticle

Cyclaneusma
Cyclaneusma minus
Pinus sylvestris
fungicides
provenance
8 Citations (Scopus)

Cytoplasmic incompatibility and mating preference in Colombian Drosophila pseudoobscura

Jenkins, T. M., Babcock, C. S., Geiser, D. M. & Anderson, W. W., Jan 1 1996, In : Genetics. 142, 1, p. 189-194 6 p.

Research output: Contribution to journalArticle

Mitochondrial DNA
Drosophila
Haplotypes
Colombia
Italy
23 Citations (Scopus)

Damage and management of Meloidogyne hapla using oxamyl on carrot in New York

Gugino, B. K., Abawi, G. S. & Ludwig, J. W., Dec 1 2006, In : Journal of Nematology. 38, 4, p. 483-490 8 p.

Research output: Contribution to journalArticle

oxamyl
Meloidogyne hapla
carrots
organic soils
mineral soils
13 Citations (Scopus)

Demystifying the nomenclature of bacterial plant pathogens

Bull, C. T., de Boer, S. H., Denny, P., Firrao, G., Fischer-Le saux, M., Saddler, G. S., Scortichini, M., Stead, D. E. & Takikawa, Y., Nov 1 2008, In : Journal of Plant Pathology. 90, 3, p. 403-417 15 p.

Research output: Contribution to journalArticle

plant pathogenic bacteria
plant pathogens
bacteria
taxonomy
plant pathology