Plant Pathology and Environmental Microbiology

  • United States

Research Output 1974 2020

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6 Citations (Scopus)

Genetic variation within clonal lineages of phytophthora infestans revealed through genotyping-by-sequencing, and implications for late blight epidemiology

Hansen, Z. R., Everts, K. L., Fry, W. E., Gevens, A. J., Grünwald, N. J., Gugino, B. K., Johnson, D. A., Johnson, S. B., Judelson, H. S., Knaus, B. J., McGrath, M. T., Myers, K. L., Ristaino, J. B., Roberts, P. D., Secor, G. A. & Smart, C. D., Nov 2016, In : PloS one. 11, 11, e0165690.

Research output: Contribution to journalArticle

Phytophthora infestans
Epidemiology
Pathogens
Joining
genotyping
4 Citations (Scopus)

Gene Transcription Analysis during Interaction between Potato and Ralstonia solanacearum1

Li, G. C., Jin, L. P., Wang, X. W., Xie, K. Y., Yang, Y., van der Vossen, E. A. G., Huang, S. W. & Qu, D. Y., Sep 9 2010, In : Russian Journal of Plant Physiology. 57, 5, p. 685-695 11 p.

Research output: Contribution to journalArticle

Ralstonia
transcription (genetics)
potatoes
Ralstonia solanacearum
genes
11 Citations (Scopus)

Genome-based evolutionary history of Pseudomonas spp

Hesse, C., Schulz, F., Bull, C. T., Shaffer, B. T., Yan, Q., Shapiro, N., Hassan, K. A., Varghese, N., Elbourne, L. D. H., Paulsen, I. T., Kyrpides, N., Woyke, T. & Loper, J. E., Jun 2018, In : Environmental microbiology. 20, 6, p. 2142-2159 18 p.

Research output: Contribution to journalArticle

Pseudomonas
genome
Genome
history
gene
71 Citations (Scopus)

Genome organization and evolution of the AVR-pita avirulence gene family in the Magnaporthe grisea species complex

Chang, H. K., Park, S. Y., Lee, Y. H., Valent, B. & Kang, S., May 1 2008, In : Molecular Plant-Microbe Interactions. 21, 5, p. 658-670 13 p.

Research output: Contribution to journalArticle

Magnaporthe
Magnaporthe grisea
Genome
genome
Magnaporthe oryzae
2 Citations (Scopus)

Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima

Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.

Research output: Contribution to journalArticle

Ailanthus
Verticillium
Agricultural Crops
Blood Vessels
Fungi
6 Citations (Scopus)

Genome sequence of fusarium isolate MYA-4552 from the midgut of Anoplophora glabripennis, an invasive, wood-boring beetle

Herr, J. R., Scully, E. D., Geib, S. M., Hoover, K., Carlson, J. E. & Geiser, D. M., Jan 1 2016, In : Genome Announcements. 4, 4, e00544-16.

Research output: Contribution to journalArticle

Beetles
Fusarium
Genome
Insects
Fungi
62 Citations (Scopus)

Genome sizes of Epichloe species and anamorphic hybrids

Kuldau, G. A., Tsai, H. F. & Schardl, C. L., Jan 1 1999, In : Mycologia. 91, 5, p. 776-782 7 p.

Research output: Contribution to journalArticle

Epichloe
Neotyphodium
Genome Size
Epichloe festucae var. lolii
Epichloe coenophiala
59 Citations (Scopus)

Genome-wide analysis of T-DNA integration into the chromosomes of Magnaporthe oryzae

Choi, J., Park, J., Jeon, J., Chi, M. H., Goh, J., Yoo, S. Y., Park, J., Jung, K., Kim, H., Park, S. Y., Rho, H. S., Kim, S., Kim, B. R., Han, S. S., Kang, S. & Lee, Y. H., Oct 1 2007, In : Molecular Microbiology. 66, 2, p. 371-382 12 p.

Research output: Contribution to journalArticle

Magnaporthe
Chromosomes
Genome
Fungal Genome
Fungi
160 Citations (Scopus)

Genome-wide functional analysis of pathogenicity genes in the rice blast fungus

Jeon, J., Park, S. Y., Chi, M. H., Choi, J., Park, J., Rho, H. S., Kim, S., Goh, J., Yoo, S., Choi, J., Park, J. Y., Yi, M., Yang, S., Kwon, M. J., Han, S. S., Kim, B. R., Khang, C. H., Park, B., Lim, S. E., Jung, K. & 10 others, Kong, S., Karunakaran, M., Oh, H. S., Kim, H., Kim, S., Park, J., Kang, S., Choi, W. B., Kang, S. & Lee, Y. H., Apr 1 2007, In : Nature Genetics. 39, 4, p. 561-565 5 p.

Research output: Contribution to journalArticle

Virulence
Informatics
Fungi
Genome
Genomics
53 Citations (Scopus)

Gibberella xylarioides (anamorph: Fusarium xylarioides), a causative agent of coffee wilt disease in Africa, is a previously unrecognized member of the G. fujikuroi species complex

Geiser, D. M., Lewis Ivey, M. L., Hakiza, G., Juba, J. H. & Miller, S. A., Jan 1 2005, In : Mycologia. 97, 1, p. 191-201 11 p.

Research output: Contribution to journalArticle

Gibberella
wilt
Coffee
anamorphs
Fusarium
32 Citations (Scopus)

Global Expression Profiling of Transcription Factor Genes Provides New Insights into Pathogenicity and Stress Responses in the Rice Blast Fungus

Park, S. Y., Choi, J., Lim, S. E., Lee, G. W., Park, J., Kim, Y., Kong, S., Kim, S. R., Rho, H. S., Jeon, J., Chi, M. H., Kim, S., Khang, C. H., Kang, S. & Lee, Y. H., Jun 1 2013, In : PLoS pathogens. 9, 6, e1003350.

Research output: Contribution to journalArticle

Virulence
Fungi
Transcription Factors
Genes
Oxidative Stress
280 Citations (Scopus)

Global molecular surveillance reveals novel Fusarium head blight species and trichothecene toxin diversity

Starkey, D. E., Ward, T. J., Aoki, T., Gale, L. R., Kistler, H. C., Geiser, D. M., Suga, H., Tóth, B., Varga, J. & O'Donnell, K., Nov 1 2007, In : Fungal Genetics and Biology. 44, 11, p. 1191-1204 14 p.

Research output: Contribution to journalArticle

Trichothecenes
Fusarium
Multilocus Sequence Typing
South Africa
DNA Sequence Analysis
119 Citations (Scopus)

Glucocorticoid-inducible expression of a bacterial avirulence gene in transgenic ARABIDOPSIS INDUCES Hypersensitive cell death

McNellis, T. W., Mudgett, M. B., Li, K., Aoyama, T., Horvath, D., Chua, N. H. & Staskawicz, B. J., Jan 1 1998, In : Plant Journal. 14, 2, p. 247-257 11 p.

Research output: Contribution to journalArticle

Bacterial Genes
glucocorticoids
Glucocorticoids
cell death
Cell Death
5 Citations (Scopus)

Grouping of populations of Heterodera trifolii by host preference and AFLP pattern

Wang, S., Riggs, R. D. & Yang, Y., Dec 1 2001, In : Nematology. 3, 7, p. 667-674 8 p.

Research output: Contribution to journalArticle

Heterodera trifolii
host preference
host preferences
amplified fragment length polymorphism
cultivar
6 Citations (Scopus)

Growth variation of white oak subjected to historic levels of fluctuating air pollution

Long, R. P. & Davis, D. D., Aug 1 1999, In : Environmental Pollution. 106, 2, p. 193-202 10 p.

Research output: Contribution to journalArticle

Air Pollution
Air pollution
Power Plants
atmospheric pollution
Power plants
25 Citations (Scopus)

Gut microbes contribute to nitrogen provisioning in a wood-feeding cerambycid

Ayayee, P., Rosa, C., Ferry, J. G., Felton, G., Saunders, M. C. & Hoover, K., Jan 1 2014, In : Environmental Entomology. 43, 4, p. 903-912 10 p.

Research output: Contribution to journalArticle

Nitrogen
digestive system
microorganisms
Larva
nitrogen
19 Citations (Scopus)

Helicoverpa zea gut-associated bacteria indirectly induce defenses in tomato by triggering a salivary elicitor(s)

Wang, J., Peiffer, M., Hoover, K., Rosa, C., Zeng, R. & Felton, G. W., May 1 2017, In : New Phytologist. 214, 3, p. 1294-1306 13 p.

Research output: Contribution to journalArticle

Helicoverpa zea
Lycopersicon esculentum
Zea mays
digestive system
tomatoes
194 Citations (Scopus)

Herbivore exploits orally secreted bacteria to suppress plant defenses

Chung, S. H., Rosa, C., Scully, E. D., Peiffer, M., Tooker, J. F., Hoover, K., Luthe, D. S. & Felton, G. W., Sep 24 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 39, p. 15728-15733 6 p.

Research output: Contribution to journalArticle

Herbivory
Salicylic Acid
Bacteria
Beetles
Larva
17 Citations (Scopus)

Herbivore Oral Secreted Bacteria Trigger Distinct Defense Responses in Preferred and Non-Preferred Host Plants

Wang, J., Chung, S. H., Peiffer, M., Rosa, C., Hoover, K., Zeng, R. & Felton, G. W., Jun 1 2016, In : Journal of Chemical Ecology. 42, 6, p. 463-474 12 p.

Research output: Contribution to journalArticle

Herbivory
Catechol Oxidase
Solanum
host plant
herbivore
62 Citations (Scopus)

Hidden host plant associations of soilborne fungal pathogens: An ecological perspective

Malcolm, G. M., Kuldau, G. A., Gugino, B. K. & Jiménez-Gasco, M. D. M., Jun 1 2013, In : PHYTOPATHOLOGY. 103, 6, p. 538-544 7 p.

Research output: Contribution to journalArticle

host plants
pathogens
Verticillium dahliae
fungi
endophytes
17 Citations (Scopus)
Fusarium
Lycopersicon esculentum
Fusarium oxysporum
Soil
tomatoes
7 Citations (Scopus)

Holdover inoculum of Pseudomonas syringae pv. alisalensis from broccoli raab causes disease in subsequent plantings

Cintas, N. A., Koike, S. T., Bunch, R. A. & Bull, C. T., Aug 1 2006, In : Plant disease. 90, 8, p. 1077-1084 8 p.

Research output: Contribution to journalArticle

Pseudomonas syringae
broccoli
inoculum
planting
disease incidence
7 Citations (Scopus)

Host genotype and hypersensitive reaction influence population levels of Xanthomonas campestris pv. vitians in lettuce

Bull, C. T., Gebben, S. J., Goldman, P. H., Trent, M. & Hayes, R. J., Mar 1 2015, In : PHYTOPATHOLOGY. 105, 3, p. 316-324 9 p.

Research output: Contribution to journalArticle

Xanthomonas campestris pv. vitians
Xanthomonas campestris
Lettuce
hypersensitive response
Ice Cover
26 Citations (Scopus)

Host plant species determines symbiotic bacterial community mediating suppression of plant defenses

Chung, S. H., Scully, E. D., Peiffer, M., Geib, S. M., Rosa, C., Hoover, K. & Felton, G. W., Jan 3 2017, In : Scientific reports. 7, 39690.

Research output: Contribution to journalArticle

Solanum
Herbivory
Bacteria
Larva
Insects
15 Citations (Scopus)

Host range, symptom expression and RNA 3 sequence analyses of six Australian strains of Cucumber mosaic virus

Sulistyowati, E., Mitter, N., Bastiaan-Net, S., Roossinck, M. J. & Dietzgen, R. G., Dec 1 2004, In : Australasian Plant Pathology. 33, 4, p. 505-512 8 p.

Research output: Contribution to journalArticle

Cucumber mosaic virus
host range
signs and symptoms (plants)
RNA
Nicotiana
3 Citations (Scopus)

Host-specific accumulation and temperature effects on the generation of dimeric viral RNA species derived from the S-RNA of members of the Tospovirus genus

Bertran, A., Ciuffo, M., Margaria, P., Rosa, C., Resende, R. O. & Turina, M., Nov 2016, In : Journal of General Virology. 97, 11, p. 3051-3062 12 p., 000598.

Research output: Contribution to journalArticle

Tospovirus
Cohort Effect
Viral RNA
Polygonum
RNA
96 Citations (Scopus)
Xanthomonas citri
Xanthomonas
Tandem Repeat Sequences
tandem repeat sequences
signs and symptoms (plants)
12 Citations (Scopus)

ICTV virus taxonomy profile: Ourmiavirus

ICTV Report Consortium, Feb 2017, In : Journal of General Virology. 98, 2, p. 129-130 2 p., 000725.

Research output: Contribution to journalArticle

Plant Viruses
Capsid Proteins
Viruses
Tombusvirus
RNA Replicase
22 Citations (Scopus)

ICTV virus taxonomy profile: Partitiviridae

ICTV Report Consortium, Jan 2018, In : Journal of General Virology. 99, 1, p. 17-18 2 p., 000985.

Research output: Contribution to journalArticle

Fungi
Viruses
Genome
Double-Stranded RNA
Oocysts
6 Citations (Scopus)

Identification and characterization of peanut stunt cucumovirus from naturally infected alfalfa in Iran

Bananej, K., Hajimorad, M. R., Roossinck, M. J. & Shahraeen, N., Jan 1 1998, In : Plant Pathology. 47, 3, p. 355-361 7 p.

Research output: Contribution to journalArticle

Peanut stunt virus
Cucumovirus
Medicago sativa
Iran
alfalfa
82 Citations (Scopus)

Identification and characterization of Pythium species associated with greenhouse floral crops in Pennsylvania

Moorman, G. W., Kang, S., Geiser, D. M. & Kim, S. H., Nov 1 2002, In : Plant disease. 86, 11, p. 1227-1231 5 p.

Research output: Contribution to journalArticle

floriculture crops
Pythium
Pythium aphanidermatum
Pythium irregulare
greenhouses
107 Citations (Scopus)

Identification and detection of phytophthora: Reviewing our progress, identifying our needs

Martin, F. N., Abad, Z. G., Balci, Y. & Ivors, K., Jan 1 2012, In : Plant disease. 96, 8, p. 1080-1103 24 p.

Research output: Contribution to journalArticle

Phytophthora
invasive species
Phytophthora ramorum
forest decline
ecosystems
56 Citations (Scopus)

Identification and differentiation of Tilletia indica and T. walkeri using the polymerase chain reaction

Frederick, R. D., Snyder, K. E., Tooley, P. W., Berthier-Schaad, Y., Peterson, G. L., Bonde, M. R., Schaad, N. W. & Knorr, D. A., Jan 1 2000, In : PHYTOPATHOLOGY. 90, 9, p. 951-960 10 p.

Research output: Contribution to journalArticle

Tilletia indica
polymerase chain reaction
wheat
Lolium
mitochondrial DNA
60 Citations (Scopus)

Identification of a new soybean rust resistance gene in PI 567102B

Li, S., Smith, J. R., Ray, J. D. & Frederick, R. D., Feb 28 2012, In : Theoretical and Applied Genetics. 125, 1, p. 133-142 10 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybean rust
Soybeans
Paraguay
Genes
44 Citations (Scopus)

Identification of a Pathogenicity locus, rpfA, in Erwinia carotovora subsp. carotovora that encodes a two-component sensor-regulator protein

Frederick, R. D., Chiu, J., Bennetzen, J. L. & Handa, A. K., Apr 1997, In : Molecular Plant-Microbe Interactions. 10, 3, p. 407-415 9 p.

Research output: Contribution to journalArticle

Pectobacterium carotovorum
Pectobacterium carotovorum subsp. carotovorum
Cellulase
Virulence
Peptide Hydrolases
13 Citations (Scopus)

Identification of apple miRNAs and their potential role in fire blight resistance

Kaja, E., Szcześniak, M. W., Jensen, P. J., Axtell, M., McNellis, T. W. & Makałowska, I., Nov 23 2015, In : Tree Genetics and Genomes. 11, 1

Research output: Contribution to journalArticle

Erwinia amylovora
Malus
MicroRNAs
microRNA
apples
8 Citations (Scopus)

Identification of Armillaria species isolated from bigtooth aspen based on rDNA RFLP analysis

Frontz, T. M., Davis, D. D., Bunyard, B. A. & Royse, D. J., Jan 1 1998, In : Canadian Journal of Forest Research. 28, 1, p. 141-149 9 p.

Research output: Contribution to journalArticle

Populus grandidentata
Armillaria
restriction fragment length polymorphism
polymorphism
DNA
33 Citations (Scopus)

Identification of a second Asian soybean rust resistance gene in Hyuuga soybean

Kendrick, M. D., Harris, D. K., Ha, B. K., Hyten, D. L., Cregan, P. B., Frederick, R. D., Boerma, H. R. & Pedley, K. F., May 1 2011, In : PHYTOPATHOLOGY. 101, 5, p. 535-543 9 p.

Research output: Contribution to journalArticle

soybean rust
Phakopsora pachyrhizi
soybeans
linkage groups
genes
15 Citations (Scopus)

Identification of bacteria in mushroom compost using ribosomal RNA sequence

Ivors, K. L., Collopy, P. D., Beyer, D. M. & Kang, S., Jan 1 2000, In : Compost Science and Utilization. 8, 3, p. 247-253 7 p.

Research output: Contribution to journalArticle

mushroom compost
mushroom
compost
composts
microorganisms
105 Citations (Scopus)

Identification of defense-related rice genes by suppression subtractive hybridization and differential screening

Xiong, L., Lee, M. W., Qi, M. & Yang, Y., Jan 1 2001, In : Molecular Plant-Microbe Interactions. 14, 5, p. 685-692 8 p.

Research output: Contribution to journalArticle

suppression subtractive hybridization
screening
rice
Immediate-Early Genes
Genes
61 Citations (Scopus)

Identification of nitrogen-incorporating bacteria in petroleum-contaminated arctic soils by using [15N]DNA-based stable isotope probing and pyrosequencing

Bell, T. H., Yergeau, E., Martineau, C., Juck, D., Whyte, L. G. & Greer, C. W., Jun 1 2011, In : Applied and environmental microbiology. 77, 12, p. 4163-4171 9 p.

Research output: Contribution to journalArticle

Petroleum
petroleum
Isotopes
stable isotopes
Arctic region
3 Citations (Scopus)
Ourmia melon virus
amino acid
Cucurbitaceae
Amino Acids
amino acids
46 Citations (Scopus)

Identification of pathogenicity-related genes in the vascular wilt fungus Verticillium dahliae by Agrobacterium tumefaciens-mediated T-DNA insertional mutagenesis

Maruthachalam, K., Klosterman, S. J., Kang, S., Hayes, R. J. & Subbarao, K. V., Nov 1 2011, In : Molecular Biotechnology. 49, 3, p. 209-221 13 p.

Research output: Contribution to journalArticle

Verticillium
Agrobacterium tumefaciens
Mutagenesis
Insertional Mutagenesis
Fungi
82 Citations (Scopus)

Identification of pathogenic races 0, 1B/C, 5, and 6 of Fusarium oxysporum f. sp. ciceris with random amplified polymorphic DNA (RAPD)

Jimenez Gasco, M. D. M., Pérez-Artés, E. & Jiménez-Diaz, R. M., Jun 15 2001, In : European Journal of Plant Pathology. 107, 2, p. 237-248 12 p.

Research output: Contribution to journalArticle

Fusarium oxysporum f. sp. ciceris
random amplified polymorphic DNA technique
DNA
pathogenicity
genetic markers
30 Citations (Scopus)

Identification of the first fungal annexin: Analysis of annexin gene duplications and implications for eukaryotic evolution

Braun, E. L., Kang, S., Nelson, M. A. & Natvig, D. O., Nov 17 1998, In : Journal of Molecular Evolution. 47, 5, p. 531-543 13 p.

Research output: Contribution to journalArticle

Annexins
Gene Duplication
slime mould
gene duplication
Genes
29 Citations (Scopus)

Identifying highly connected counties compensates for resource limitations when evaluating national spread of an invasive pathogen

Sutrave, S., Scoglio, C., Isard, S. A., Hutchinson, J. M. S. & Garrett, K. A., Jun 12 2012, In : PloS one. 7, 6, e37793.

Research output: Contribution to journalArticle

Pathogens
Soybeans
Introduced Species
soybean rust
pathogens
12 Citations (Scopus)

IMGD: An integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes

Lee, W., Park, J., Choi, J., Jung, K., Park, B., Kim, D., Lee, J., Ahn, K., Song, W., Kang, S., Lee, Y. H. & Lee, S., Apr 7 2009, In : BMC genomics. 10, 148.

Research output: Contribution to journalArticle

Insect Genome
Mitochondrial Genome
Genomics
Databases
Single Nucleotide Polymorphism

Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight

Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.

Research output: Contribution to journalArticle

Calonectria
Buxus sempervirens
composting
blight
ammonia

Impact of cultivated hosts on the recombination of cucumber mosaic virus

Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 7, e01770.

Research output: Contribution to journalArticle

Cucumovirus
Cucumber mosaic virus
Genetic Recombination
Tobacco
pepper
5 Citations (Scopus)
Nitrogen Dioxide
nitrogen dioxide
Solanum tuberosum
tubers
potatoes