Plant Pathology and Environmental Microbiology

  • United States

Research Output 1974 2019

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2017
48 Citations (Scopus)

Tritrophic Interactions: Microbe-Mediated Plant Effects on Insect Herbivores

Shikano, I., Rosa, C., Tan, C. W. & Felton, G., Aug 4 2017, In : Annual Review of Phytopathology. 55, p. 313-331 19 p.

Research output: Contribution to journalArticle

tritrophic interactions
herbivores
microorganisms
insects
phytopharmaceuticals
22 Citations (Scopus)

Use of the soft-agar overlay technique to screen for bacterially produced inhibitory compounds

Hockett, K. L. & Baltrus, D. A., Jan 14 2017, In : Journal of Visualized Experiments. 2017, 119, e55064.

Research output: Contribution to journalArticle

Bacteriocins
Bacteriophages
Dilution
Agar
Poisons
12 Citations (Scopus)

Variation of pathotypes and races and their correlations with clonal lineages in Verticillium dahliae

Jiménez-Díaz, R. M., Olivares-García, C., Trapero-Casas, J. L., Jiménez-Gasco, M. M., Navas-Cortés, J. A., Landa, B. B. & Milgroom, M. G., May 1 2017, In : Plant Pathology. 66, 4, p. 651-666 16 p.

Research output: Contribution to journalArticle

Verticillium
Verticillium dahliae
pathotypes
Virulence
Olea
3 Citations (Scopus)

Within gut physicochemical variation does not correspond to distinct resident fungal and bacterial communities in the tree-killing xylophage, Anoplophora glabripennis

Mason, C. J., Long, D. C., McCarthy, E. M., Nagachar, N., Rosa, C., Scully, E. D., Tien, M. & Hoover, K., Oct 2017, In : Journal of Insect Physiology. 102, p. 27-35 9 p.

Research output: Contribution to journalArticle

Anoplophora glabripennis
fungal communities
bacterial communities
Insects
digestive system
2016
13 Citations (Scopus)

A diverse soil microbiome degrades more crude oil than specialized bacterial assemblages obtained in culture

Bell, T. H., Stefani, F. O. P., Abram, K., Champagne, J., Yergeau, E., Hijri, M. & St-Arnaud, M., Jan 1 2016, In : Applied and environmental microbiology. 82, 18, p. 5530-5541 12 p.

Research output: Contribution to journalArticle

Microbiota
Petroleum
crude oil
biodegradation
Soil
10 Citations (Scopus)

Angular leaf spot of cucurbits is associated with genetically diverse pseudomonas syringae strains

Newberry, E. A., Jardini, T. M., Rubio, I., Roberts, P. D., Babu, B., Koike, S. T., Bouzar, H., Goss, E. M., Jones, J. B., Bull, C. T. & Paret, M. L., Jul 1 2016, In : Plant disease. 100, 7, p. 1397-1404 8 p.

Research output: Contribution to journalArticle

leaf spot
Pseudomonas syringae
Cucurbitaceae
Pseudomonas syringae pv. lachrymans
cantaloupes
2 Citations (Scopus)

A physically based theoretical model of spore deposition for predicting spread of plant diseases

Isard, S. A. & Chamecki, M., Mar 1 2016, In : Phytopathology. 106, 3, p. 244-253 10 p.

Research output: Contribution to journalArticle

spore dispersal
plant diseases and disorders
inoculum
spores
Uromyces appendiculatus
14 Citations (Scopus)

Clonal expansion and migration of a highly virulent, defoliating lineage of Verticillium dahliae

Milgroom, M. G., Jimenez Gasco, M. D. M., Olivares-García, C. & Jiménez-Díaz, R. M., Sep 1 2016, In : PHYTOPATHOLOGY. 106, 9, p. 1038-1046 9 p.

Research output: Contribution to journalArticle

Verticillium dahliae
defoliation
single nucleotide polymorphism
haplotypes
Southwestern United States
12 Citations (Scopus)

Comparison of small RNA profiles in Nicotiana benthamiana and Solanum lycopersicum infected by polygonum ringspot tospovirus reveals host-specific responses to viral infection

Margaria, P., Miozzi, L., Ciuffo, M., Rosa, C., Axtell, M., Pappu, H. R. & Turina, M., Jan 4 2016, In : Virus Research. 211, p. 38-45 8 p.

Research output: Contribution to journalArticle

Tospovirus
Polygonum
Virus Diseases
Lycopersicon esculentum
Tobacco
33 Citations (Scopus)

Corn yield loss estimates due to diseases in the United States and Ontario, Canada from 2012 to 2015

Mueller, D. S., Wise, K. A., Sisson, A. J., Allen, T. W., Bergstrom, G. C., Bosley, D. B., Bradley, C. A., Broders, K. D., Byamukama, E., Chilvers, M. I., Collins, A., Faske, T. R., Friskop, A. J., Heiniger, R. W., Hollier, C. A., Hooker, D. C., Isakeit, T., Jackson-Ziems, T. A., Jardine, D. J., Kelly, H. M. & 13 others, Kinzer, K., Koenning, S. R., Malvick, D. K., McMullen, M., Meyer, R. F., Paul, P. A., Robertson, A. E., Roth, G. W., Smith, D. L., Tande, C. A., Tenuta, A. U., Vincelli, P. & Warner, F., Jan 1 2016, In : Plant Health Progress. 17, 3, p. 211-222 12 p.

Research output: Contribution to journalArticle

Ontario
Canada
corn
leaf spot
research policy
4 Citations (Scopus)

Dynamics of Physicochemical Variables and Cultivable Bacteria in Vermicompost during Steady Food Waste Addition and Upon Feed Interruption

Hénault-Ethier, L., Bell, T., Martin, V. J. J. & Gélinas, Y., Apr 2 2016, In : Compost Science and Utilization. 24, 2, p. 117-135 19 p.

Research output: Contribution to journalArticle

food waste
vermicomposts
bacterium
food
carbohydrate
1 Citation (Scopus)

Effects of spent mushroom compost (SMC) as an ingredient in phase I compost on production of Agaricus bisporus

Bishop, E. L., Pecchia, J. A., Wilkinson, V., Albert, I. & Royse, D. J., Jan 1 2016, In : Compost Science and Utilization. 24, 4, p. 246-258 13 p.

Research output: Contribution to journalArticle

spent mushroom compost
Agaricus bisporus
mushroom
compost
composts
5 Citations (Scopus)

Efficacy of Beauveria bassiana formulations against the fungus gnat Lycoriella ingenua

Andreadis, S. S., Cloonan, K. R., Bellicanta, G. S., Paley, K., Pecchia, J. & Jenkins, N. E., Dec 1 2016, In : Biological Control. 103, p. 165-171 7 p.

Research output: Contribution to journalArticle

Lycoriella
fungus gnats
Beauveria bassiana
mushrooms
bioassays
31 Citations (Scopus)

Epitypification of Fusisporium (Fusarium) solani and its assignment to a common phylogenetic species in the Fusarium solani species complex

Schroers, H. J., Samuels, G. J., Zhang, N., Short, D. P. G., Juba, J. & Geiser, D. M., Jan 1 2016, In : Mycologia. 108, 4, p. 806-819 14 p.

Research output: Contribution to journalArticle

Fusarium solani
Fusarium
species complex
Solanum tuberosum
phylogenetics
17 Citations (Scopus)

Essential amino acid supplementation by gut microbes of a wood-feeding cerambycid

Ayayee, P. A., Larsen, T., Rosa, C., Felton, G. W., Ferry, J. G. & Hoover, K., Feb 1 2016, In : Environmental Entomology. 45, 1, p. 66-73 8 p.

Research output: Contribution to journalArticle

essential amino acids
digestive system
amino acid
microorganisms
Anoplophora glabripennis
10 Citations (Scopus)

Ethylene biosynthesis and signaling is required for rice immune response and basal resistance against Magnaporthe oryzae infection

Helliwell, E. E., Wang, Q. & Yang, Y., Nov 1 2016, In : Molecular Plant-Microbe Interactions. 29, 11, p. 831-843 13 p.

Research output: Contribution to journalArticle

Magnaporthe
Magnaporthe oryzae
ethylene production
ethylene
immune response
4 Citations (Scopus)

Evolution of Nine Microsatellite Loci in the Fungus Fusarium oxysporum

Demers, J. E. & Jiménez-Gasco, M. D. M., Jan 1 2016, In : Journal Of Molecular Evolution. 82, 1, p. 27-37 11 p.

Research output: Contribution to journalArticle

Fusarium
Fusarium oxysporum
Microsatellite Repeats
mutation
phylogeny

First report of White clover mosaic virus and turnip mosaic virus mixed infection on garlic mustard in Pennsylvania

Zhao, K., Margaria, P. & Rosa, C., Apr 2016, In : Plant disease. 100, 4, 1 p.

Research output: Contribution to journalArticle

White clover mosaic virus
Alliaria petiolata
Turnip mosaic virus
mixed infection
Nicotiana benthamiana
6 Citations (Scopus)

Genetic variation within clonal lineages of phytophthora infestans revealed through genotyping-by-sequencing, and implications for late blight epidemiology

Hansen, Z. R., Everts, K. L., Fry, W. E., Gevens, A. J., Grünwald, N. J., Gugino, B. K., Johnson, D. A., Johnson, S. B., Judelson, H. S., Knaus, B. J., McGrath, M. T., Myers, K. L., Ristaino, J. B., Roberts, P. D., Secor, G. A. & Smart, C. D., Nov 2016, In : PloS one. 11, 11, e0165690.

Research output: Contribution to journalArticle

Phytophthora infestans
Epidemiology
Pathogens
Joining
genotyping
6 Citations (Scopus)

Genome sequence of fusarium isolate MYA-4552 from the midgut of Anoplophora glabripennis, an invasive, wood-boring beetle

Herr, J. R., Scully, E. D., Geib, S. M., Hoover, K., Carlson, J. E. & Geiser, D. M., Jan 1 2016, In : Genome Announcements. 4, 4, e00544-16.

Research output: Contribution to journalArticle

Beetles
Fusarium
Genome
Insects
Fungi
17 Citations (Scopus)

Herbivore Oral Secreted Bacteria Trigger Distinct Defense Responses in Preferred and Non-Preferred Host Plants

Wang, J., Chung, S. H., Peiffer, M., Rosa, C., Hoover, K., Zeng, R. & Felton, G. W., Jun 1 2016, In : Journal of Chemical Ecology. 42, 6, p. 463-474 12 p.

Research output: Contribution to journalArticle

Herbivory
Catechol Oxidase
Solanum
host plant
herbivore
3 Citations (Scopus)

Host-specific accumulation and temperature effects on the generation of dimeric viral RNA species derived from the S-RNA of members of the Tospovirus genus

Bertran, A., Ciuffo, M., Margaria, P., Rosa, C., Resende, R. O. & Turina, M., Nov 2016, In : Journal of General Virology. 97, 11, p. 3051-3062 12 p., 000598.

Research output: Contribution to journalArticle

Tospovirus
Cohort Effect
Viral RNA
Polygonum
RNA
3 Citations (Scopus)
Ourmia melon virus
amino acid
Cucurbitaceae
Amino Acids
amino acids
20 Citations (Scopus)

Isolation of endohyphal bacteria from foliar Ascomycota and In Vitro establishment of their symbiotic associations

Arendt, K. R., Hockett, K. L., Araldi-Brondolo, S. J., Baltrus, D. A. & Arnold, A. E., May 1 2016, In : Applied and environmental microbiology. 82, 10, p. 2943-2949 7 p.

Research output: Contribution to journalArticle

Ascomycota
Bacteria
bacterium
bacteria
Fungi
51 Citations (Scopus)

Kingdom-wide analysis of fungal small secreted proteins (SSPs) reveals their potential role in host association

Kim, K. T., Jeon, J., Choi, J., Cheong, K., Song, H., Choi, G., Kang, S. & Lee, Y. H., Feb 19 2016, In : Frontiers in Plant Science. 7, FEB2016, 186.

Research output: Contribution to journalArticle

proteins
lifestyle
enzymes
phytotoxins
oxidoreductases
5 Citations (Scopus)

Late Blight and Early Blight Resistance from Solanum hougasii Introgressed Into Solanum tuberosum

Haynes, K. G. & Qu, X., Feb 1 2016, In : American Journal of Potato Research. 93, 1, p. 86-95 10 p.

Research output: Contribution to journalArticle

Solanum hougasii
Phytophthora infestans
blight
Solanum tuberosum
clones
5 Citations (Scopus)

Modeling the decision process for barley yellow dwarf management

Walls, J. T., Caciagli, P., Tooker, J. F., Russo, J. M., Rajotte, E. G. & Rosa, C., Sep 1 2016, In : Computers and Electronics in Agriculture. 127, p. 775-786 12 p.

Research output: Contribution to journalArticle

decision support systems
decision support system
Decision support systems
barley
modeling
3 Citations (Scopus)

Multilocus sequence typing of strains of bacterial spot of lettuce collected in the United States

Fayette, J., Raid, R., Roberts, P. D., Jones, J. B., Pernezny, K., Bull, C. T. & Goss, E. M., Jan 1 2016, In : PHYTOPATHOLOGY. 106, 11, p. 1262-1269 8 p.

Research output: Contribution to journalArticle

Xanthomonas campestris pv. vitians
lettuce
genetic variation
pathogens
haplotypes
12 Citations (Scopus)
Pleurotus
Poaceae
Agaricales
Saccharum
Dietary Fiber
14 Citations (Scopus)

Phylogenetic resolution of deep eukaryotic and fungal relationships using highly conserved low-copy nuclear genes

Ren, R., Sun, Y., Zhao, Y., Geiser, D., Ma, H. & Zhou, X., Jan 1 2016, In : Genome biology and evolution. 8, 9, p. 2683-2701 19 p.

Research output: Contribution to journalArticle

phylogenetics
gene
phylogeny
Genes
genes
7 Citations (Scopus)

Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice

Lu, W., Deng, M., Guo, F., Wang, M., Zeng, Z., Han, N., Yang, Y., Zhu, M. & Bian, H., Dec 1 2016, In : Rice. 9, 1, 65.

Research output: Contribution to journalArticle

stomata
salt tolerance
vacuoles
rupture
rice
9 Citations (Scopus)

The miR393a/target module regulates seed germination and seedling establishment under submergence in rice (Oryza sativa L.)

Guo, F., Han, N., Xie, Y., Fang, K., Yang, Y., Zhu, M., Wang, J. & Bian, H., Oct 1 2016, In : Plant Cell and Environment. 39, 10, p. 2288-2302 15 p.

Research output: Contribution to journalArticle

Cotyledon
submergence
coleoptiles
Germination
Seedlings
10 Citations (Scopus)

Using a Novel Partitivirus in Pseudogymnoascus destructans to Understand the Epidemiology of White-Nose Syndrome

Thapa, V., Turner, G. G., Hafenstein, S., Overton, B. E., Vanderwolf, K. J. & Roossinck, M. J., Dec 27 2016, In : PLoS pathogens. 12, 12, e1006076.

Research output: Contribution to journalArticle

Nose
Epidemiology
Fungi
Viruses
Canada
16 Citations (Scopus)

Veterinary fusarioses within the United States

O'Donnell, K., Sutton, D. A., Wiederhold, N., Robert, V. A. R. G., Crous, P. W. & Geiser, D. M., Nov 2016, In : Journal of clinical microbiology. 54, 11, p. 2813-2819 7 p.

Research output: Contribution to journalArticle

Fusarium
Mycoses
Keratitis
Invertebrates
Horses
2015
9 Citations (Scopus)

A new look at plant viruses and their potential beneficial roles in crops

Roossinck, M. J., May 1 2015, In : Molecular plant pathology. 16, 4, p. 331-333 3 p.

Research output: Contribution to journalArticle

Agricultural Crops
Plant Viruses
plant viruses
virus
Fungi
11 Citations (Scopus)

A unifying gravity framework for dispersal

Jongejans, E., Skarpaas, O., Ferrari, M. J., Long, E. S., Dauer, J. T., Schwarz, C. M., Rauschert, E. S. J., Jabbour, R., Mortensen, D. A., Isard, S. A., Lieb, D. A., Sezen, Z., Hulting, A. G. & Shea, K., Dec 13 2015, In : Theoretical Ecology. 8, 2, p. 207-223 17 p.

Research output: Contribution to journalArticle

gravity
zoology
study application
botany
epidemiology
4 Citations (Scopus)
Phyllachorales
Plectosphaerellaceae
Ailanthus
Ailanthus altissima
Verticillium
326 Citations (Scopus)

Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system

Xie, K., Minkenberg, B. & Yang, Y., Mar 17 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. 3570-3575 6 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Transfer RNA
Synthetic Genes
Endonucleases
19 Citations (Scopus)

Clustering of two genes putatively involved in cyanate detoxification evolved recently and independently in multiple fungal lineages

Elmore, M. H., McGary, K. L., Wisecaver, J. H., Slot, J. C., Geiser, D. M., Sink, S., O'Donnell, K. & Rokas, A., Jan 1 2015, In : Genome biology and evolution. 7, 3, p. 789-800 12 p.

Research output: Contribution to journalArticle

cyanates
Cyanates
Multigene Family
detoxification
multigene family
9 Citations (Scopus)

Comparison of pathogenic variation among phakopsora pachyrhizi isolates collected from the United States and International locations, and identification of soybean genotypes resistant to the U.S. isolates

Paul, C., Frederick, R. D., Hill, C. B., Hartman, G. L. & Walker, D. R., Jan 1 2015, In : Plant disease. 99, 8, p. 1059-1069 11 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybeans
virulence
genotype
principal component analysis
3 Citations (Scopus)

Comprehensive sampling of an isolated dune system demonstrates clear patterns in soil fungal communities across a successional gradient

Roy-Bolduc, A., Bell, T. H., Boudreau, S. & Hijri, M., Dec 1 2015, In : Environmental Microbiology Reports. 7, 6, p. 839-848 10 p.

Research output: Contribution to journalArticle

soil fungi
dunes
dune
Soil
sampling
54 Citations (Scopus)

Culture-dependent and -independent methods capture different microbial community fractions in hydrocarbon-contaminated soils

Stefani, F. O. P., Bell, T. H., Marchand, C., De La Providencia, I. E., El Yassimi, A., St-Arnaud, M. & Hijri, M., Jun 8 2015, In : PloS one. 10, 6, e0128272.

Research output: Contribution to journalArticle

Otus
Hydrocarbons
polluted soils
microbial communities
hydrocarbons
4 Citations (Scopus)

Development of a transformation system for Hirsutella spp. and visualization of the mode of nematode infection by GFP-labeled H. minnesotensis

Sun, J., Park, S. Y., Kang, S., Liu, X., Qiu, J. & Xiang, M., Jul 20 2015, In : Scientific reports. 5, 10477.

Research output: Contribution to journalArticle

Nematode Infections
Glycine
Caenorhabditis elegans
Fungal Spores
Fungi
18 Citations (Scopus)

Differential responses to virus challenge of laboratory and wild accessions of Australian species of Nicotiana, and comparative analysis of RDR1 gene sequences

Wylie, S. J., Zhang, C., Long, V., Roossinck, M. J., Koh, S. H., Jones, M. G. K., Iqbal, S. & Li, H., Mar 30 2015, In : PloS one. 10, 3, e0121787.

Research output: Contribution to journalArticle

Nicotiana benthamiana
Nicotiana
Viruses
Tobacco
Virus Diseases
57 Citations (Scopus)

Discordant phylogenies suggest repeated host shifts in the Fusarium-Euwallacea ambrosia beetle mutualism

O'Donnell, K., Sink, S., Libeskind-Hadas, R., Hulcr, J., Kasson, M. T., Ploetz, R. C., Konkol, J. L., Ploetz, J. N., Carrillo, D., Campbell, A., Duncan, R. E., Liyanage, P. N. H., Eskalen, A., Na, F., Geiser, D. M., Bateman, C., Freeman, S., Mendel, Z., Sharon, M., Aoki, T. & 2 others, Cossé, A. A. & Rooney, A. P., Sep 1 2015, In : Fungal Genetics and Biology. 82, p. 277-290 14 p.

Research output: Contribution to journalArticle

Ambrosia
Symbiosis
Beetles
Fusarium
Phylogeny
7 Citations (Scopus)

Dispersion of particles released at the leading edge of a crop canopy

Pan, Y., Chamecki, M., Isard, S. A. & Nepf, H. M., Oct 5 2015, In : Agricultural and Forest Meteorology. 211-212, p. 37-47 11 p.

Research output: Contribution to journalArticle

canopy
crop
shear stress
vortex
large eddy simulation
7 Citations (Scopus)

Does the P value have a future in plant pathology?

Madden, L. V., Shah, D. A. & Esker, P., Nov 1 2015, In : PHYTOPATHOLOGY. 105, 11, p. 1400-1407 8 p.

Research output: Contribution to journalArticle

plant pathology
data analysis
testing
31 Citations (Scopus)

Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill

Bell, T. H., Cloutier-Hurteau, B., Al-Otaibi, F., Turmel, M. C., Yergeau, E., Courchesne, F. & St-Arnaud, M., Aug 1 2015, In : Environmental microbiology. 17, 8, p. 3025-3038 14 p.

Research output: Contribution to journalArticle

Salix
Waste Disposal Facilities
Rhizosphere
Microbiota
landfills
19 Citations (Scopus)

Effect of glyphosate application on sudden death syndrome of glyphosate-resistant soybean under field conditions

Kandel, Y. R., Bradley, C. A., Wise, K. A., Chilvers, M. I., Tenuta, A. U., Davis, V. M., Esker, P. D., Smith, D. L., Licht, M. A. & Mueller, D. S., Jan 1 2015, In : Plant disease. 99, 3, p. 347-354 8 p., A007.

Research output: Contribution to journalArticle

glyphosate
soybeans
death
herbicides
plant tissues
18 Citations (Scopus)

Effect of maize hybrid and foliar fungicides on yield under low foliar disease severity conditions

Mallowa, S. O., Esker, P. D., Paul, P. A., Bradley, C. A., Chapara, V. R., Conley, S. P. & Robertson, A. E., Aug 1 2015, In : PHYTOPATHOLOGY. 105, 8, p. 1080-1089 10 p.

Research output: Contribution to journalArticle

foliar diseases
disease severity
fungicides
corn
pesticide application