Plant Pathology and Environmental Microbiology

  • United States

Research Output 1974 2019

Filter
Review article
2019
1 Citation (Scopus)

100 Years Since Tolaas: Bacterial Blotch of Mushrooms in the 21st Century

Osdaghi, E., Martins, S. J., Ramos-Sepulveda, L., Vieira, F. R., Pecchia, J. A., Beyer, D. M., Bell, T. H., Yang, Y., Hockett, K. L. & Bull, C. T., Nov 1 2019, In : Plant disease. 103, 11, p. 2714-2732 19 p.

Research output: Contribution to journalReview article

Open Access
mushrooms
etiology
Pseudomonas tolaasii
farms
Agaricus bisporus
6 Citations (Scopus)

CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications

Molla, K. A. & Yang, Y., Oct 1 2019, In : Trends in Biotechnology. 37, 10, p. 1121-1142 22 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
DNA
Genes
Agricultural Crops
Inborn Genetic Diseases
12 Citations (Scopus)

Evolutionary and ecological links between plant and fungal viruses

Roossinck, M. J., Jan 1 2019, In : New Phytologist. 221, 1, p. 86-92 7 p.

Research output: Contribution to journalReview article

mycoviruses
Plant Viruses
plant viruses
Viruses
viruses
7 Citations (Scopus)

The Inherent Conflicts in Developing Soil Microbial Inoculants

Kaminsky, L. M., Trexler, R. V., Malik, R. J., Hockett, K. & Bell, T., Feb 1 2019, In : Trends in Biotechnology. 37, 2, p. 140-151 12 p.

Research output: Contribution to journalReview article

Agricultural Inoculants
Soil
Soils
Crops
Fertilizers
1 Citation (Scopus)

The past, present, and future of barley yellow dwarf management

Walls, J., Rajotte, E. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.

Research output: Contribution to journalReview article

Hordeum
barley
Disease Management
Insecticides
disease control

Viruses in the phytobiome

Roossinck, M. J., Aug 1 2019, In : Current Opinion in Virology. 37, p. 72-76 5 p.

Research output: Contribution to journalReview article

Plant Viruses
Viruses
Soil
2018
8 Citations (Scopus)

RNA interference mechanisms and applications in plant pathology

Rosa, C., Kuo, Y. W., Wuriyanghan, H. & Falk, B. W., Aug 25 2018, In : Annual Review of Phytopathology. 56, p. 581-610 30 p.

Research output: Contribution to journalReview article

plant pathology
RNA interference
eukaryotic cells
RNA
plant diseases and disorders
8 Citations (Scopus)

The role of citizen science in addressing grand challenges in food and agriculture research

Ryan, S. F., Adamson, N. L., Aktipis, A., Andersen, L. K., Austin, R., Barnes, L., Beasley, M. R., Bedell, K. D., Briggs, S., Chapman, B., Cooper, C. B., Corn, J. O., Creamer, N. G., Delborne, J. A., Domenico, P., Driscoll, E., Goodwin, J., Hjarding, A., Hulbert, J. M., Isard, S. & 22 others, Just, M. G., Kar Gupta, K., López-Uribe, M. M., O’Sullivan, J., Landis, E. A., Madden, A. A., McKenney, E. A., Nichols, L. M., Reading, B. J., Russell, S., Sengupta, N., Shapiro, L. R., Shell, L. K., Sheard, J. K., Shoemaker, D. D., Sorger, D. M., Starling, C., Thakur, S., Vatsavai, R. R., Weinstein, M., Winfrey, P. & Dunn, R. R., Nov 21 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1891, 20181977.

Research output: Contribution to journalReview article

Agriculture
agriculture
Food
food
food science
2017
18 Citations (Scopus)

Deep sequencing for discovery and evolutionary analysis of plant viruses

Roossinck, M. J., Jul 15 2017, In : Virus Research. 239, p. 82-86 5 p.

Research output: Contribution to journalReview article

Plant Viruses
High-Throughput Nucleotide Sequencing
Viruses
Nucleic Acids
Technology
11 Citations (Scopus)

The U.S. culture collection network responding to the requirements of the Nagoya protocol on access and benefit sharing

McCluskey, K., Barker, K. B., Barton, H. A., Boundy-Mills, K., Brown, D. R., Coddington, J. A., Cook, K., Desmeth, P., Geiser, D. M., Glaeser, J. A., Greene, S., Kang, S., Lomas, M. W., Melcher, U., Miller, S. E., Nobles, D. R., Owens, K. J., Reichman, J. H., Silva, M. D., Wertz, J. & 2 others, Whitworth, C. & Smith, D., Jul 1 2017, In : mBio. 8, 4, e00982-17.

Research output: Contribution to journalReview article

Biodiversity
United States Department of Agriculture
Informed Consent
Research Personnel
Genome
2016
11 Citations (Scopus)

Invasive Asian Fusarium – Euwallacea ambrosia beetle mutualists pose a serious threat to forests, urban landscapes and the avocado industry

O’Donnell, K., Libeskind-Hadas, R., Hulcr, J., Bateman, C., Kasson, M. T., Ploetz, R. C., Konkol, J. L., Ploetz, J. N., Carrillo, D., Campbell, A., Duncan, R. E., Liyanage, P. N. H., Eskalen, A., Lynch, S. C., Geiser, D. M., Freeman, S., Mendel, Z., Sharon, M., Aoki, T., Cossé, A. A. & 1 others, Rooney, A. P., Sep 1 2016, In : Phytoparasitica. 44, 4, p. 435-442 8 p.

Research output: Contribution to journalReview article

ambrosia beetles
avocados
Fusarium
industry
symbionts
58 Citations (Scopus)

Sequence-based classification and identification of Fungi

Hibbett, D., Abarenkov, K., Kõljalg, U., Öpik, M., Chai, B., Cole, J., Wang, Q., Crous, P., Robert, V., Helgason, T., Herr, J. R., Kirk, P., Lueschow, S., O'Donnell, K., Nilsson, R. H., Oono, R., Schoch, C., Smyth, C., Walker, D. M., Porras-Alfaro, A. & 2 others, Taylor, J. W. & Geiser, D. M., Nov 1 2016, In : Mycologia. 108, 6, p. 1049-1068 20 p.

Research output: Contribution to journalReview article

Fungi
fungus
taxonomy
fungi
Metagenomics
17 Citations (Scopus)

Stop and smell the fungi: Fungal volatile metabolites are overlooked signals involved in fungal interaction with plants

Li, N., Alfiky, A., Vaughan, M. M. & Kang, S., Jul 1 2016, In : Fungal Biology Reviews. 30, 3, p. 134-144 11 p.

Research output: Contribution to journalReview article

Smell
smell
Fungi
metabolites
fungi
5 Citations (Scopus)

The U.S. Culture Collection Network lays the foundation for progress in preservation of valuable microbial resources

McCluskey, K., Alvarez, A., Bennett, R., Bokati, D., Boundy-Mills, K., Brown, D., Bull, C. T., Coffey, M., Dreaden, T., Duke, C., Dye, G., Ehmke, E., Eversole, K., Fenstermacher, K., Geiser, D., Glaeser, J. A., Greene, S., Gribble, L., Griffith, M. P., Hanser, K. & 20 others, Humber, R., Johnson, B. W., Kermode, A., Krichevsky, M., Laudon, M., Leach, J., Leslie, J., May, M., Melcher, U., Nobles, D., Fonseca, N. R., Robinson, S., Ryan, M., Scott, J., Silflow, C., Vidaver, A., Webb, K. M., Wertz, J. E., Yentsch, S. & Zehr, S., Jun 2016, In : PHYTOPATHOLOGY. 106, 6, p. 532-540 9 p.

Research output: Contribution to journalReview article

USDA
Agricultural Research Service
genetic resources
funding
stakeholders
2015
35 Citations (Scopus)

Ecosystem simplification, biodiversity loss and plant virus emergence

Roossinck, M. J. & García-Arenal, F., Jun 2015, In : Current Opinion in Virology. 10, p. 56-62 7 p.

Research output: Contribution to journalReview article

Plant Viruses
Biodiversity
Ecosystem
Virus Diseases
Plant Diseases
31 Citations (Scopus)

Fusarium wilt of chickpeas: Biology, ecology and management

Jiménez-Díaz, R. M., Castillo, P., Jimenez Gasco, M. D. M., Landa, B. B. & Navas-Cortés, J. A., Jul 1 2015, In : Crop Protection. 73, p. 16-27 12 p.

Research output: Contribution to journalReview article

chickpeas
Fusarium wilt
disease control
ecology
Biological Sciences
10 Citations (Scopus)

History, epidemic evolution, and model burn-in for a network of annual invasion: Soybean rust

Sanatkar, M. R., Scoglio, C., Natarajan, B., Isard, S. A. & Garrett, K. A., Jul 1 2015, In : PHYTOPATHOLOGY. 105, 7, p. 947-955 9 p.

Research output: Contribution to journalReview article

soybean rust
history
Phakopsora pachyrhizi
pathogens
climate change
50 Citations (Scopus)

Plants, viruses and the environment: Ecology and mutualism

Roossinck, M. J., May 1 2015, In : Virology. 479-480, p. 271-277 7 p.

Research output: Contribution to journalReview article

Plant Viruses
Symbiosis
Ecology
Viruses
Insect Vectors
106 Citations (Scopus)

Plant virus metagenomics: Advances in virus discovery

Roossinck, M. J., Martin, D. P. & Roumagnac, P., Jun 1 2015, In : PHYTOPATHOLOGY. 105, 6, p. 716-727 12 p.

Research output: Contribution to journalReview article

plant viruses
viruses
wild plants
virus-like particles
domestication
5 Citations (Scopus)

The United States Culture Collection Network (USCCN): Enhancing microbial genomics research through living microbe culture collections

Boundy-Mills, K., Hess, M., Bennett, A. R., Ryan, M., Kang, S., Nobles, D., Eisen, J. A., Inderbitzin, P., Sitepu, I. R., Torok, T., Brown, D. R., Cho, J., Wertz, J. E., Mukherjee, S., Cady, S. L. & McCluskey, K., Jan 1 2015, In : Applied and environmental microbiology. 81, 17, p. 5671-5674 4 p.

Research output: Contribution to journalReview article

Genomics
genomics
microorganisms
Research
educational research
2014
12 Citations (Scopus)

How does the genome structure and lifestyle of a virus affect its population variation?

Safari, M. & Roossinck, M. J., Dec 1 2014, In : Current Opinion in Virology. 9, p. 39-44 6 p.

Research output: Contribution to journalReview article

Life Style
Population Dynamics
Genome
Viruses
Population
68 Citations (Scopus)

Increasing phytoremediation efficiency and reliability using novel omics approaches

Bell, T., Joly, S., Pitre, F. E. & Yergeau, E., Jan 1 2014, In : Trends in Biotechnology. 32, 5, p. 271-280 10 p.

Research output: Contribution to journalReview article

Environmental Biodegradation
Soil
Soils
Environmental technology
Technology
74 Citations (Scopus)

Systematics of key phytopathogenic Fusarium species: Current status and future challenges

Aoki, T., O'Donnell, K. & Geiser, D. M., Jan 1 2014, In : Journal of General Plant Pathology. 80, 3, p. 189-201 13 p.

Research output: Contribution to journalReview article

Fusarium
taxonomy
plant pathogens
mycotoxins
phylogeny
2013
52 Citations (Scopus)

A horizon scan of global conservation issues for 2013

Sutherland, W. J., Bardsley, S., Clout, M., Depledge, M. H., Dicks, L. V., Fellman, L., Fleishman, E., Gibbons, D. W., Keim, B., Lickorish, F., Margerison, C., Monk, K. A., Norris, K., Peck, L. S., Prior, S. V., Scharlemann, J. P. W., Spalding, M. D. & Watkinson, A. R., Jan 1 2013, In : Trends in Ecology and Evolution. 28, 1, p. 16-22 7 p.

Research output: Contribution to journalReview article

journalists
thorium
nuclear power
A horizons
antimicrobial peptides
17 Citations (Scopus)

A life history view of mutualistic viral symbioses: Quantity or quality for cooperation?

Bao, X. & Roossinck, M. J., Aug 1 2013, In : Current Opinion in Microbiology. 16, 4, p. 514-518 5 p.

Research output: Contribution to journalReview article

Symbiosis
Viruses
Viral Genome
Conservation of Natural Resources
Ecology
17 Citations (Scopus)

Microbial competition in polar soils: A review of an understudied but potentially important control on productivity

Bell, T. H., Callender, K. L., Whyte, L. G. & Greer, C. W., Mar 27 2013, In : Biology. 2, 2, p. 533-554 22 p.

Research output: Contribution to journalReview article

microbial competition
Soil
Productivity
Soils
Nutrients
99 Citations (Scopus)

Roles of plant hormones and their interplay in rice immunity

Yang, D. L., Yang, Y. & He, Z., May 2013, In : Molecular plant. 6, 3, p. 675-685 11 p.

Research output: Contribution to journalReview article

Plant Growth Regulators
plant hormones
Immunity
immunity
rice
83 Citations (Scopus)

Sniffing on microbes: Diverse roles of microbial volatile organic compounds in plant health

Bitas, V., Kim, H. S., Bennett, J. W. & Kang, S., Aug 1 2013, In : Molecular Plant-Microbe Interactions. 26, 8, p. 835-843 9 p.

Research output: Contribution to journalReview article

Volatile Organic Compounds
plant health
volatile organic compounds
microorganisms
Health
2012
10 Citations (Scopus)
crop losses
Food Supply
food supply
crop
Research
12 Citations (Scopus)

Do persistent RNA viruses fit the trade-off hypothesis of virulence evolution?

Márquez, L. M. & Roossinck, M. J., Jan 1 2012, In : Current Opinion in Virology. 2, 5, p. 556-560 5 p.

Research output: Contribution to journalReview article

RNA Viruses
Virulence
Eukaryota
Costs and Cost Analysis
Viruses
17 Citations (Scopus)

Webbased horizon scanning: Concepts and practice

Palomino, M. A., Bardsley, S., Bown, K., de Lurio, J., Ellwood, P., HollandSmith, D., Huggins, B., Vincenti, A., Woodroof, H. & Owen, R., Aug 24 2012, In : foresight. 14, 5, p. 355-373 19 p.

Research output: Contribution to journalReview article

Scanning
Web-based
Decision making
Good practice
Symposium
2011
57 Citations (Scopus)

Fibrillin protein function: The tip of the iceberg?

Singh, D. K. & McNellis, T. W., Aug 1 2011, In : Trends in Plant Science. 16, 8, p. 432-441 10 p.

Research output: Contribution to journalReview article

chromoplasts
icebergs
plastids
plant stress
biotic stress
240 Citations (Scopus)

The good viruses: Viral mutualistic symbioses

Roossinck, M. J., Feb 1 2011, In : Nature Reviews Microbiology. 9, 2, p. 99-108 10 p.

Research output: Contribution to journalReview article

Symbiosis
Viruses
Insects
Fungi
Bacteria
2010
89 Citations (Scopus)

Lifestyles of plant viruses

Roossinck, M. J., Jun 27 2010, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 365, 1548, p. 1899-1905 7 p.

Research output: Contribution to journalReview article

Plant Viruses
plant viruses
Viruses
lifestyle
Life Style
47 Citations (Scopus)

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes

Kang, S., Mansfield, M. A., Park, B., Geiser, D. M., Ivors, K. L., Coffey, M. D., Grunwald, N. J., Martin, F. N., Lévesque, C. A. & Blair, J. E., Aug 1 2010, In : PHYTOPATHOLOGY. 100, 8, p. 732-737 6 p.

Research output: Contribution to journalReview article

Oomycetes
plant pathogenic fungi
pathogens
Phytophthora
diagnostic techniques
2009
55 Citations (Scopus)

Beyond yield: Plant disease in the context of ecosystem services

Cheatham, M. R., Rouse, M. N., Esker, P. D., Ignacio, S., Pradel, W., Raymundo, R., Sparks, A. H., Forbes, G. A., Gordon, T. R. & Garrett, K. A., Nov 1 2009, In : PHYTOPATHOLOGY. 99, 11, p. 1228-1236 9 p.

Research output: Contribution to journalReview article

plant diseases and disorders
ecosystem services
ecosystems
genetic resources
pathogens
2008
90 Citations (Scopus)

Disease cycle approach to plant disease prediction

De Wolf, E. D. & Isard, S. A., Jun 1 2008, In : Annual Review of Phytopathology. 45, p. 203-220 18 p.

Research output: Contribution to journalReview article

plant diseases and disorders
dormancy
prediction
pathogens
disease control
44 Citations (Scopus)

Diseases of pyrethrum in Tasmania: Challenges and prospects for management

Pethybridge, S. J., Hay, F. S., Esker, P. D., Gent, D. H., Wilson, C. R., Groom, T. & Nutter, F. W., Sep 1 2008, In : Plant disease. 92, 9, p. 1260-1272 13 p.

Research output: Contribution to journalReview article

Tasmania
2007
3 Citations (Scopus)

Organic research at the USDA agricultural research service is taking root

Bull, C. T., Jul 25 2007, In : Journal of Vegetable Science. 12, 4, p. 5-17 13 p.

Research output: Contribution to journalReview article

Agricultural Research Service
USDA
organic production
farms
agricultural research
65 Citations (Scopus)

Rice mitogen-activated protein kinase gene family and its role in biotic and abiotic stress response

Rohila, J. S. & Yang, Y., Jun 1 2007, In : Journal of Integrative Plant Biology. 49, 6, p. 751-759 9 p.

Research output: Contribution to journalReview article

biotic stress
Mitogen-Activated Protein Kinases
mitogen-activated protein kinase
abiotic stress
stress response
2006
31 Citations (Scopus)

Mutant clouds and occupation of sequence space in plant RNA viruses

Roossinck, M. J. & Schneider, W. L., Jan 20 2006, In : Current topics in microbiology and immunology. 299, p. 337-348 12 p.

Research output: Contribution to journalReview article

Plant RNA
Plant Viruses
RNA Viruses
Occupations
Viruses
2005
93 Citations (Scopus)

Symbiosis versus competition in plant virus evolution

Roossinck, M. J., Dec 1 2005, In : Nature Reviews Microbiology. 3, 12, p. 917-924 8 p.

Research output: Contribution to journalReview article

Plant Viruses
Symbiosis
Viruses
Plant Pathology
Genetic Selection
2004
171 Citations (Scopus)

Plant virus satellite and defective interfering RNAs: New paradigms for a new century

Simon, A. E., Roossinck, M. J. & Havelda, Z., Oct 14 2004, In : Annual Review of Phytopathology. 42, p. 415-437 23 p.

Research output: Contribution to journalReview article

plant viruses
signs and symptoms (plants)
RNA
viruses
RNA interference
55 Citations (Scopus)

The Fusarium oxysporum f. sp. ciceris/Cicer arietinum pathosystem: A case study of the evolution of plant-pathogenic fungi into races and pathotypes

Jimenez Gasco, M. D. M., Navas-Cortés, J. A. & Jiménez-Díaz, R. M., Jan 1 2004, In : International Microbiology. 7, 2, p. 95-104 10 p.

Research output: Contribution to journalReview article

Cicer
Fusarium
Virulence
Fungi
Phenotype
2003
129 Citations (Scopus)

Advances in molecular-based diagnostics in meeting crop biosecurity and phytosanitary issues

Schaad, N. W., Frederick, R. D., Shaw, J., Schneider, W. L., Hickson, R., Petrillo, M. D. & Luster, D. G., Nov 24 2003, In : Annual Review of Phytopathology. 41, p. 305-324 20 p.

Research output: Contribution to journalReview article

crop biosecurity
anthrax
crops
plant pathogens
quantitative polymerase chain reaction
21 Citations (Scopus)

Gray leaf spot (blast) of perennial ryegrass turf: An emerging problem for the turfgrass industry

Uddin, W., Viji, G. & Vincelli, P., Aug 1 2003, In : Plant disease. 87, 8, p. 880-889 10 p.

Research output: Contribution to journalReview article

leaf spot
turf grasses
lawns and turf
Lolium perenne
industry
59 Citations (Scopus)

Plant RNA virus evolution

Roossinck, M. J., Jan 1 2003, In : Current Opinion in Microbiology. 6, 4, p. 406-409 4 p.

Research output: Contribution to journalReview article

Plant RNA
Plant Viruses
RNA Viruses
Viruses
Mutation Rate
95 Citations (Scopus)

United States Department of Agriculture - Agricultural Research Service research on alternatives to methyl bromide: Pre-plant and post-harvest

Schneider, S. M., Rosskopf, E. N., Leesch, J. G., Chellemi, D. O., Bull, C. T. & Mazzola, M., Jun 1 2003, In : Pest Management Science. 59, 6-7, p. 814-826 13 p.

Research output: Contribution to journalReview article

Agricultural Research Service
methyl bromide
USDA
plant pathology
research programs
2001
12 Citations (Scopus)

Atmospheric motion systems that influence the redistribution and accumulation of insects on the beaches of the great lakes in North America

Isard, S. A., Kristovich, D. A. R., Gage, S. H., Jones, C. J. & Laird, N. F., Dec 1 2001, In : Aerobiologia. 17, 4, p. 275-291 17 p.

Research output: Contribution to journalReview article

Beetles
Lakes
North America
beaches
Insects
82 Citations (Scopus)

Transformation: A tool for studying fungal pathogens of plants

Mullins, E. D. & Kang, S., Jan 1 2001, In : Cellular and Molecular Life Sciences. 58, 14, p. 2043-2052 10 p.

Research output: Contribution to journalReview article

DNA
Fungal Genes
Virulence
Fungi
Insertional Mutagenesis