Research Output 1973 2020

2020

A goodness-of-fit test for zero-inflated Poisson mixed effects models in tree abundance studies

Liu, J., Ma, Y. & Johnstone, J., Apr 2020, In : Computational Statistics and Data Analysis. 144, 106887.

Research output: Contribution to journalArticle

Mixed Effects Model
Goodness of Fit Test
Siméon Denis Poisson
Sampling
Zero
Robots
Information science
Computer science
Statistical methods
Robotics

A rewiring model of intratumoral interaction networks

Sang, M., Rice, S., Jiang, L., Liu, X., Gragnoli, C., Belani, C. P. & Wu, R., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 45-51 7 p.

Research output: Contribution to journalReview article

Open Access
Tumors
Neoplasms
Cells
Blueprints
Game theory
Copula Models
Recurrent Events
Hierarchical Model
Myocardial Infarction
Time-varying
Generalized Linear Mixed Model
Moving Average
Bayesian Analysis
Laplace
Random Field

Connecting and Contrasting the Bayes Factor and a Modified ROPE Procedure for Testing Interval Null Hypotheses

Liao, J. G., Midya, V. & Berg, A., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

Bayes Factor
Null hypothesis
Equivalence
Testing
Interval
5 Citations (Scopus)

Convergence Analysis of Deterministic Kernel-Based Quadrature Rules in Misspecified Settings

Kanagawa, M., Sriperumbudur, B. K. & Fukumizu, K., Feb 1 2020, In : Foundations of Computational Mathematics. 20, 1, p. 155-194 40 p.

Research output: Contribution to journalArticle

Quadrature Rules
Convergence Analysis
Quadrature
Sobolev spaces
Integrand
1 Citation (Scopus)

Effects of two centuries of global environmental variation on phenology and physiology of Arabidopsis thaliana

DeLeo, V. L., Menge, D. N. L., Hanks, E. M., Juenger, T. E. & Lasky, J. R., Feb 1 2020, In : Global Change Biology. 26, 2, p. 523-538 16 p.

Research output: Contribution to journalArticle

Physiology
Land use
phenology
physiology
Rain

Examining measurement reactivity in daily diary data on substance use: Results from a randomized experiment

Buu, A., Yang, S., Li, R., Zimmerman, M. A., Cunningham, R. M. & Walton, M. A., Mar 2020, In : Addictive Behaviors. 102, 106198.

Research output: Contribution to journalArticle

Cannabis
Drinking
Alcohols
Monitoring
Experiments

Genome-wide analysis of the NAC domain transcription factor gene family in Theobroma cacao

Shen, S., Zhang, Q., Shi, Y., Sun, Z., Zhang, Q., Hou, S., Wu, R., Jiang, L., Zhao, X. & Guo, Y., Jan 2020, In : Genes. 11, 1, 35.

Research output: Contribution to journalArticle

Open Access
Cacao
Transcription Factors
Genome
Genes
Plant Development

Independent component analysis for multivariate functional data

Virta, J., Li, B., Nordhausen, K. & Oja, H., Mar 2020, In : Journal of Multivariate Analysis. 176, 104568.

Research output: Contribution to journalArticle

Functional Data
Independent component analysis
Multivariate Data
Independent Component Analysis
Functional Principal Component Analysis
Model-based Clustering
Exponential Family
Graph Model
Random Graphs
International trade

Small screening design when the overall variance is unknown

Peng, J. & Lin, D. K. J., Mar 2020, In : Journal of Statistical Planning and Inference. 205, p. 1-9 9 p.

Research output: Contribution to journalArticle

Screening Design
Screening
Unknown
Hadamard matrices
Response Surface Methodology

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells

Hardison, R. C., Zhang, Y., Keller, C. A., Xiang, G., Heuston, E. F., An, L., Lichtenberg, J., Giardine, B. M., Bodine, D., Mahony, S., Li, Q., Yue, F., Weiss, M. J., Blobel, G. A., Taylor, J., Hughes, J., Higgs, D. R. & Göttgens, B., Jan 1 2020, In : IUBMB Life. 72, 1, p. 27-38 12 p.

Research output: Contribution to journalReview article

Open Access
GATA Transcription Factors
Paint
Epigenomics
Genes
Chromatin
1 Citation (Scopus)

Trabecular Bone Structure in the Distal Femur of Humans, Apes, and Baboons

Sukhdeo, S., Parsons, J., Niu, X. M. & Ryan, T. M., Jan 1 2020, In : Anatomical Record. 303, 1, p. 129-149 21 p.

Research output: Contribution to journalArticle

Papio
Hominidae
Pongidae
femur
Femur

Variable Selection and Feature Screening

Liu, W. & Li, R., Jan 1 2020, Advanced Studies in Theoretical and Applied Econometrics. Springer, p. 293-326 34 p. (Advanced Studies in Theoretical and Applied Econometrics; vol. 52).

Research output: Chapter in Book/Report/Conference proceedingChapter

Screening
Variable selection
Cox model
Varying coefficient model
Generalized linear model

Variable selection for kriging in computer experiments

Huang, H., Lin, D. K. J., Liu, M. Q. & Zhang, Q., Jan 2 2020, In : Journal of Quality Technology. 52, 1, p. 40-53 14 p.

Research output: Contribution to journalArticle

Experiments
Pistons
Variable selection
Kriging
Computer experiments
2019
1 Citation (Scopus)

A Bayesian joint model of recurrent events and a terminal event

Li, Z., Chinchilli, V. M. & Wang, M., Jan 2019, In : Biometrical Journal. 61, 1, p. 187-202 16 p.

Research output: Contribution to journalArticle

Recurrent Events
Joint Model
Bayesian Model
Frailty
Frailty Model
2 Citations (Scopus)

A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-k in human populations

Li, W., Lin, L., Malhotra, R., Yang, L., Acharya, R. & Poss, M., Mar 2019, In : PLoS computational biology. 15, 3, e1006564.

Research output: Contribution to journalArticle

Open Access
Retroviridae
Endogenous Retroviruses
human population
Genome
genome

A Computational Model for Inferring QTL Control Networks Underlying Developmental Covariation

Jiang, L., Shi, H., Sang, M., Zheng, C., Cao, Y., Zhu, X., Zhuo, X., Cheng, T., Zhang, Q., Wu, R. & Sun, L., Dec 18 2019, In : Frontiers in Plant Science. 10, 1557.

Research output: Contribution to journalArticle

Open Access
quantitative trait loci
allometry
shoots
Prunus mume
ornamental woody plants

A consistent estimator for logistic mixed effect models

Wei, Y., Ma, Y., Garcia, T. P. & Sinha, S., Jun 2019, In : Canadian Journal of Statistics. 47, 2, p. 140-156 17 p.

Research output: Contribution to journalArticle

Mixed Effects Model
Consistent Estimator
Logistics
Random Effects
Covariates
1 Citation (Scopus)

Adapting clinical trial design to maintain meaningful outcomes during a multicenter asthma trial in the precision medicine era

On behalf of the National Heart Lung and Blood Institute's “AsthmaNet”, Feb 2019, In : Contemporary Clinical Trials. 77, p. 98-103 6 p.

Research output: Contribution to journalArticle

Precision Medicine
Multicenter Studies
Asthma
Eosinophils
Clinical Trials

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

Dissection
quantitative trait loci
DNA Shuffling
Genetic Selection
Quantitative Trait Loci

A Drive to Driven Model of Mapping Intraspecific Interaction Networks

Jiang, L., Xu, J., Sang, M., Zhang, Y., Ye, M., Zhang, H., Wu, B., Zhu, Y., Xu, P., Tai, R., Zhao, Z., Jiang, Y., Dong, C., Sun, L., Griffin, C. H., Gragnoli, C. & Wu, R., Dec 20 2019, In : iScience. 22, p. 109-122 14 p.

Research output: Contribution to journalArticle

Open Access
intraspecific interaction
phenotype
altruism
community ecology
mutualism

A Dynamic Individual-Based Model for High-Resolution Ant Interactions

Wikle, N. B., Hanks, E. M. & Hughes, D. P., Dec 1 2019, In : Journal of Agricultural, Biological, and Environmental Statistics. 24, 4, p. 589-609 21 p.

Research output: Contribution to journalArticle

Individual-based Model
individual-based model
Ants
trophallaxis
ant

A Multisignal Wavelet Variance-Based Framework for Inertial Sensor Stochastic Error Modeling

Radi, A., Bakalli, G., Guerrier, S., El-Sheimy, N., Sesay, A. B. & Molinari, R., Dec 2019, In : IEEE Transactions on Instrumentation and Measurement. 68, 12, p. 4924-4936 13 p., 8667740.

Research output: Contribution to journalArticle

sensors
Sensors
Calibration
graphical user interface
Units of measurement

An adaptive multivariate two-sample test with application to microbiome differential abundance analysis

Banerjee, K., Zhao, N., Srinivasan, A., Xue, L., Hicks, S. D., Middleton, F. A., Wu, R. & Zhan, X., Jan 1 2019, In : Frontiers in Genetics. 10, APR, 350.

Research output: Contribution to journalArticle

Open Access
Microbiota
Validation Studies
Software
Multivariate Analysis
1 Citation (Scopus)

Analyzing outliers: robust methods to the rescue

Greco, L., Luta, G., Krzywinski, M. & Altman, N., Apr 1 2019, In : Nature methods. 16, 4, p. 275-276 2 p.

Research output: Contribution to journalComment/debate

An automated method to detect transiting circumbinary planets

Windemuth, D., Agol, E., Carter, J., Ford, E. B., Haghighipour, N., Orosz, J. A. & Welsh, W. F., Jan 1 2019, In : Monthly Notices of the Royal Astronomical Society. 490, 1, p. 1313-1324 12 p.

Research output: Contribution to journalArticle

Open Access
transit
planets
planet
light curve
time measurement
Open Access
Colorectal Surgery
Angiotensins
Acute Kidney Injury
Cohort Studies
Retrospective Studies
7 Citations (Scopus)

An integrin αIIbβ3 intermediate affinity state mediates biomechanical platelet aggregation

Chen, Y., Ju, L. A., Zhou, F., Liao, J., Xue, L., Su, Q. P., Jin, D., Yuan, Y., Lu, H., Jackson, S. P. & Zhu, C., Jul 1 2019, In : Nature Materials. 18, 7, p. 760-769 10 p.

Research output: Contribution to journalArticle

Platelets
platelets
Integrins
affinity
Agglomeration

An omnidirectional visualization model of personalized gene regulatory networks

Chen, C., Jiang, L., Fu, G., Wang, M., Wang, Y., Shen, B., Liu, Z., Wang, Z., Hou, W., Berceli, S. A. & Wu, R., Jan 1 2019, In : NPJ systems biology and applications. 5, 1 p.

Research output: Contribution to journalArticle

Open Access
Gene Regulatory Networks
Gene Regulatory Network
Visualization
Genes
Gene
1 Citation (Scopus)

Ant colonies maintain social homeostasis in the face of decreased density

Modlmeier, A. P., Colman, E., Hanks, E. M., Bringenberg, R., Bansal, S. & Hughes, D. P., May 2019, In : eLife. 8, e38473.

Research output: Contribution to journalArticle

Open Access
Ants
Homeostasis
Food

A regulatory network for mir156-spl module in arabidopsis thaliana

Zheng, C., Ye, M., Sang, M. & Wu, R., Dec 2 2019, In : International journal of molecular sciences. 20, 24, 6166.

Research output: Contribution to journalReview article

Open Access
Arabidopsis
modules
sequencing
determinants
genes

A semiparametric efficient estimator in case-control studies for gene–environment independent models

Liang, L., Ma, Y. & Carroll, R. J., Sep 2019, In : Journal of Multivariate Analysis. 173, p. 38-50 13 p.

Research output: Contribution to journalArticle

Efficient Estimator
Case-control Study
Susceptibility
Gene-environment Interaction
Estimator
3 Citations (Scopus)

A Spatial Markov Model for Climate Extremes

Reich, B. J. & Shaby, B. A., Jan 2 2019, In : Journal of Computational and Graphical Statistics. 28, 1, p. 117-126 10 p.

Research output: Contribution to journalArticle

Spatial Model
Climate
Markov Model
Extremes
Climate Models
2 Citations (Scopus)

Assessing changes in groundwater chemistry in landscapes with more than 100 years of oil and gas development

Wen, T., Agarwal, A., Xue, L., Chen, A., Herman, A., Li, Z. & Brantley, S. L., Feb 2019, In : Environmental Science: Processes and Impacts. 21, 2, p. 384-396 13 p.

Research output: Contribution to journalArticle

Natural Gas
Groundwater
Oils
Oil and Gas Fields
Gases
6 Citations (Scopus)

Association between DNA methylation in obesity-related genes and body mass index percentile in adolescents

He, F., Berg, A., Imamura Kawasawa, Y., Bixler, E. O., Fernandez-Mendoza, J., Whitsel, E. A. & Liao, D., Dec 1 2019, In : Scientific reports. 9, 1, 2079.

Research output: Contribution to journalArticle

DNA Methylation
Body Mass Index
Obesity
Genes
Pediatric Obesity
41 Citations (Scopus)

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

23andMe Research Team, HUNT All-In Psychiatry, Liu, M., Jiang, Y., Wedow, R., Li, Y., Brazel, D. M., Chen, F., Datta, G., Davila-Velderrain, J., McGuire, D., Tian, C., Zhan, X., Agee, M., Alipanahi, B., Auton, A., Bell, R. K., Bryc, K., Elson, S. L., Fontanillas, P. & 32 others, Furlotte, N. A., Hinds, D. A., Hromatka, B. S., Huber, K. E., Kleinman, A., Litterman, N. K., McIntyre, M. H., Mountain, J. L., Northover, C. A. M., Sathirapongsasuti, J. F., Sazonova, O. V., Shelton, J. F., Shringarpure, S., Tian, C., Tung, J. Y., Vacic, V., Wilson, C. H., Pitts, S. J., Mitchell, A., Skogholt, A. H., Winsvold, B. S., Sivertsen, B., Stordal, E., Morken, G., Kallestad, H., Heuch, I., Zwart, J. A., Fjukstad, K. K., Pedersen, L. M., Gabrielsen, M. E., Johnsen, M. B. & Liu, D., Feb 1 2019, In : Nature Genetics. 51, 2, p. 237-244 8 p.

Research output: Contribution to journalLetter

Tobacco Use
Alcohols
Tobacco Use Cessation
Genetic Association Studies
Synaptic Transmission
2 Citations (Scopus)
Hormone Replacement Therapy
Coronary Disease
Meta-Analysis
Stroke
Regression Analysis

A time varying approach to the stock return–inflation puzzle

Li, X. & Zhao, Z., Jan 1 2019, (Accepted/In press) In : Journal of the Royal Statistical Society. Series C: Applied Statistics.

Research output: Contribution to journalArticle

Change-point Analysis
Inflation
Time-varying
Local Stationarity
Stock Returns

A unified DNA sequence and non-DNA sequence mapping model of complex traits

Zeng, Y., Zhu, X., Chen, C., Banerjee, K., Sun, L., Yu, W., Zheng, B. & Wu, R., Jan 1 2019, In : Plant Journal. 99, 4, p. 784-795 12 p.

Research output: Contribution to journalArticle

quantitative trait loci
Quantitative Trait Loci
nucleotide sequences
Taxaceae
Gymnosperms

A unified mapping framework of multifaceted pharmacodynamic responses to hypertension interventions

Wang, Q., Gan, J., Wei, K., Berceli, S. A., Gragnoli, C. & Wu, R., Mar 1 2019, In : Drug Discovery Today. 24, 3, p. 883-889 7 p.

Research output: Contribution to journalReview article

Quantitative Trait Loci
Blood Pressure
Hypertension
Pharmaceutical Preparations
Patient Rights

Author Correction: Two-level factorial experiments (Nature Methods, (2019), 16, 3, (211-212), 10.1038/s41592-019-0335-9)

Smucker, B., Krzywinski, M. & Altman, N., May 1 2019, In : Nature methods. 16, 5, 1 p.

Research output: Contribution to journalComment/debate

Open Access
HTML
Experiments

Author Correction: Tabular data (Nature Methods, (2017), 14, 4, (329-330), 10.1038/nmeth.4239)

Altman, N. & Krzywinski, M., Jul 1 2019, In : Nature methods. 16, 7, 1 p.

Research output: Contribution to journalComment/debate

Open Access
2 Citations (Scopus)

Autoregressive Planet Search: Application to the Kepler Mission

Caceres, G. A., Feigelson, E. D., Babu, G. J., Bahamonde, N., Christen, A., Bertin, K., Meza, C. & Curé, M., Jan 1 2019, In : Astronomical Journal. 158, 2, 58.

Research output: Contribution to journalArticle

Kepler mission
planets
planet
transit
light curve
1 Citation (Scopus)

Autoregressive Planet Search: Methodology

Caceres, G. A., Feigelson, E. D., Babu, G. J., Bahamonde, N., Christen, A., Bertin, K., Meza, C. & Curé, M., Jan 1 2019, In : Astronomical Journal. 158, 2, 57.

Research output: Contribution to journalArticle

transit
planets
planet
methodology
light curve
2 Citations (Scopus)

Autoregressive Planet Search: Feasibility Study for Irregular Time Series

Stuhr, A. M., Feigelson, E. D., Caceres, G. A. & Hartman, J. D., Jan 1 2019, In : Astronomical Journal. 158, 2, 59.

Research output: Contribution to journalArticle

feasibility study
planets
planet
time series
transit

Bayesian Estimation of MSM Population Size in Côte d’Ivoire

Datta, A., Lin, W., Rao, A., Diouf, D., Kouame, A., Edwards, J. K., Bao, L., Louis, T. A. & Baral, S., Jan 1 2019, In : Statistics and Public Policy. 6, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
Marginal Structural Models
Bayesian Estimation
Population Size
West Africa
Estimate

Bayesian multidimensional scaling procedure with variable selection

Lin, L. & Fong, D. K. H., Jan 2019, In : Computational Statistics and Data Analysis. 129, p. 1-13 13 p.

Research output: Contribution to journalArticle

Variable Selection
Scaling
Dimension Reduction
Side Information
Multivariate Regression