Research Output 1973 2020

2020
Generalized Linear Mixed Model
Moving Average
Bayesian Analysis
Laplace
Random Field
Model-based Clustering
Exponential Family
Graph Model
Random Graphs
International trade

Small screening design when the overall variance is unknown

Peng, J. & Lin, D. K. J., Mar 1 2020, In : Journal of Statistical Planning and Inference. 205, p. 1-9 9 p.

Research output: Contribution to journalArticle

Screening Design
Screening
Unknown
Hadamard matrices
Response Surface Methodology
2019
1 Citation (Scopus)

A Bayesian joint model of recurrent events and a terminal event

Li, Z., Chinchilli, V. & Wang, M., Jan 1 2019, In : Biometrical Journal. 61, 1, p. 187-202 16 p.

Research output: Contribution to journalArticle

Recurrent Events
Joint Model
Bayesian Model
Frailty
Frailty Model
1 Citation (Scopus)

A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-k in human populations

Li, W., Lin, L., Malhotra, R., Yang, L., Acharya, R. & Poss, M., Mar 2019, In : PLoS computational biology. 15, 3, e1006564.

Research output: Contribution to journalArticle

Open Access
Retroviridae
Endogenous Retroviruses
human population
Genome
genome

A consistent estimator for logistic mixed effect models

Wei, Y., Ma, Y., Garcia, T. P. & Sinha, S., Jun 1 2019, In : Canadian Journal of Statistics. 47, 2, p. 140-156 17 p.

Research output: Contribution to journalArticle

Mixed Effects Model
Consistent Estimator
Logistics
Random Effects
Covariates
1 Citation (Scopus)

Adapting clinical trial design to maintain meaningful outcomes during a multicenter asthma trial in the precision medicine era

On behalf of the National Heart Lung and Blood Institute's “AsthmaNet”, Feb 1 2019, In : Contemporary Clinical Trials. 77, p. 98-103 6 p.

Research output: Contribution to journalArticle

Precision Medicine
Multicenter Studies
Asthma
Eosinophils
Clinical Trials

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

Dissection
quantitative trait loci
DNA Shuffling
Genetic Selection
Quantitative Trait Loci

A Dynamic Individual-Based Model for High-Resolution Ant Interactions

Wikle, N. B., Hanks, E. M. & Hughes, D. P., Dec 1 2019, In : Journal of Agricultural, Biological, and Environmental Statistics. 24, 4, p. 589-609 21 p.

Research output: Contribution to journalArticle

Individual-based Model
individual-based model
Ants
trophallaxis
ant

An adaptive multivariate two-sample test with application to microbiome differential abundance analysis

Banerjee, K., Zhao, N., Srinivasan, A., Xue, L., Hicks, S. D., Middleton, F. A., Wu, R. & Zhan, X., Jan 1 2019, In : Frontiers in Genetics. 10, APR, 350.

Research output: Contribution to journalArticle

Open Access
Microbiota
Validation Studies
Software
Multivariate Analysis
1 Citation (Scopus)

Analyzing outliers: robust methods to the rescue

Greco, L., Luta, G., Krzywinski, M. & Altman, N. S., Apr 1 2019, In : Nature methods. 16, 4, p. 275-276 2 p.

Research output: Contribution to journalComment/debate

Open Access
Colorectal Surgery
Angiotensins
Acute Kidney Injury
Cohort Studies
Retrospective Studies
6 Citations (Scopus)

An integrin αIIbβ3 intermediate affinity state mediates biomechanical platelet aggregation

Chen, Y., Ju, L. A., Zhou, F., Liao, J., Xue, L., Su, Q. P., Jin, D., Yuan, Y., Lu, H., Jackson, S. P. & Zhu, C., Jul 1 2019, In : Nature Materials. 18, 7, p. 760-769 10 p.

Research output: Contribution to journalArticle

Platelets
platelets
Integrins
affinity
Agglomeration

An omnidirectional visualization model of personalized gene regulatory networks

Chen, C., Jiang, L., Fu, G., Wang, M., Wang, Y., Shen, B., Liu, Z., Wang, Z., Hou, W., Berceli, S. A. & Wu, R., Jan 1 2019, In : NPJ systems biology and applications. 5, 1 p.

Research output: Contribution to journalArticle

Open Access
Gene Regulatory Networks
Gene Regulatory Network
Visualization
Genes
Gene

Ant colonies maintain social homeostasis in the face of decreased density

Modlmeier, A. P., Colman, E., Hanks, E. M., Bringenberg, R., Bansal, S. & Hughes, D. P., May 2019, In : eLife. 8, e38473.

Research output: Contribution to journalArticle

Open Access
Ants
Homeostasis
Food

ARBEE: Towards Automated Recognition of Bodily Expression of Emotion in the Wild

Luo, Y., Ye, J., Adams, Jr., R., Li, J., Newman, M. G. & Wang, J. Z., Jan 1 2019, (Accepted/In press) In : International Journal of Computer Vision.

Research output: Contribution to journalArticle

Robots
Information science
Computer science
Statistical methods
Robotics

A semiparametric efficient estimator in case-control studies for gene–environment independent models

Liang, L., Ma, Y. & Carroll, R. J., Sep 1 2019, In : Journal of Multivariate Analysis. 173, p. 38-50 13 p.

Research output: Contribution to journalArticle

Efficient Estimator
Case-control Study
Susceptibility
Gene-environment Interaction
Estimator
3 Citations (Scopus)

A Spatial Markov Model for Climate Extremes

Reich, B. J. & Shaby, B. A., Jan 2 2019, In : Journal of Computational and Graphical Statistics. 28, 1, p. 117-126 10 p.

Research output: Contribution to journalArticle

Spatial Model
Climate
Markov Model
Extremes
Climate Models
2 Citations (Scopus)

Assessing changes in groundwater chemistry in landscapes with more than 100 years of oil and gas development

Wen, T., Agarwal, A., Xue, L., Chen, A., Herman, A., Li, Z. & Brantley, S. L., Feb 1 2019, In : Environmental Science: Processes and Impacts. 21, 2, p. 384-396 13 p.

Research output: Contribution to journalArticle

Natural Gas
Groundwater
Oils
Oil and Gas Fields
Gases
5 Citations (Scopus)

Association between DNA methylation in obesity-related genes and body mass index percentile in adolescents

He, F., Berg, A., Imamura, Y., Bixler, E., Fernandez-Mendoza, J., Whitsel, E. A. & Liao, D., Dec 1 2019, In : Scientific reports. 9, 1, 2079.

Research output: Contribution to journalArticle

DNA Methylation
Body Mass Index
Obesity
Genes
Pediatric Obesity
35 Citations (Scopus)

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

23andMe Research Team, HUNT All-In Psychiatry, Liu, M., Jiang, Y., Wedow, R., Li, Y., Brazel, D. M., Chen, F., Datta, G., Davila-Velderrain, J., McGuire, D., Tian, C., Zhan, X., Agee, M., Alipanahi, B., Auton, A., Bell, R. K., Bryc, K., Elson, S. L., Fontanillas, P. & 32 others, Furlotte, N. A., Hinds, D. A., Hromatka, B. S., Huber, K. E., Kleinman, A., Litterman, N. K., McIntyre, M. H., Mountain, J. L., Northover, C. A. M., Sathirapongsasuti, J. F., Sazonova, O. V., Shelton, J. F., Shringarpure, S., Tian, C., Tung, J. Y., Vacic, V., Wilson, C. H., Pitts, S. J., Mitchell, A., Skogholt, A. H., Winsvold, B. S., Sivertsen, B., Stordal, E., Morken, G., Kallestad, H., Heuch, I., Zwart, J. A., Fjukstad, K. K., Pedersen, L. M., Gabrielsen, M. E., Johnsen, M. B. & Liu, D., Feb 1 2019, In : Nature Genetics. 51, 2, p. 237-244 8 p.

Research output: Contribution to journalLetter

Tobacco Use
Alcohols
Tobacco Use Cessation
Genetic Association Studies
Synaptic Transmission
1 Citation (Scopus)
Hormone Replacement Therapy
Coronary Disease
Meta-Analysis
Stroke
Regression Analysis

A time varying approach to the stock return–inflation puzzle

Li, X. & Zhao, Z., Jan 1 2019, (Accepted/In press) In : Journal of the Royal Statistical Society. Series C: Applied Statistics.

Research output: Contribution to journalArticle

Change-point Analysis
Inflation
Time-varying
Local Stationarity
Stock Returns
Copula Models
Recurrent Events
Hierarchical Model
Myocardial Infarction
Time-varying

A unified DNA sequence and non-DNA sequence mapping model of complex traits

Zeng, Y., Zhu, X., Chen, C., Banerjee, K., Sun, L., Yu, W., Zheng, B. & Wu, R., Jan 1 2019, In : Plant Journal. 99, 4, p. 784-795 12 p.

Research output: Contribution to journalArticle

quantitative trait loci
Quantitative Trait Loci
nucleotide sequences
Taxaceae
Gymnosperms

A unified mapping framework of multifaceted pharmacodynamic responses to hypertension interventions

Wang, Q., Gan, J., Wei, K., Berceli, S. A., Gragnoli, C. & Wu, R., Mar 1 2019, In : Drug Discovery Today. 24, 3, p. 883-889 7 p.

Research output: Contribution to journalReview article

Quantitative Trait Loci
Blood Pressure
Hypertension
Pharmaceutical Preparations
Patient Rights

Author Correction: Two-level factorial experiments (Nature Methods, (2019), 16, 3, (211-212), 10.1038/s41592-019-0335-9)

Smucker, B., Krzywinski, M. & Altman, N. S., May 1 2019, In : Nature methods. 16, 5, 1 p.

Research output: Contribution to journalComment/debate

Open Access
HTML
Experiments

Author Correction: Tabular data (Nature Methods, (2017), 14, 4, (329-330), 10.1038/nmeth.4239)

Altman, N. S. & Krzywinski, M., Jul 1 2019, In : Nature methods. 16, 7, 1 p.

Research output: Contribution to journalComment/debate

Open Access
1 Citation (Scopus)

Autoregressive Planet Search: Methodology

Caceres, G. A., Feigelson, E. D., Babu, G. J., Bahamonde, N., Christen, A., Bertin, K., Meza, C. & Curé, M., Jan 1 2019, In : Astronomical Journal. 158, 2, 57.

Research output: Contribution to journalArticle

transit
planets
planet
methodology
light curve
2 Citations (Scopus)

Autoregressive Planet Search: Application to the Kepler Mission

Caceres, G. A., Feigelson, E. D., Babu, G. J., Bahamonde, N., Christen, A., Bertin, K., Meza, C. & Curé, M., Jan 1 2019, In : Astronomical Journal. 158, 2, 58.

Research output: Contribution to journalArticle

Kepler mission
planets
planet
transit
light curve
2 Citations (Scopus)

Autoregressive Planet Search: Feasibility Study for Irregular Time Series

Stuhr, A. M., Feigelson, E. D., Caceres, G. A. & Hartman, J. D., Jan 1 2019, In : Astronomical Journal. 158, 2, 59.

Research output: Contribution to journalArticle

feasibility study
planets
planet
time series
transit

Bayesian multidimensional scaling procedure with variable selection

Lin, L. & Fong, D., Jan 1 2019, In : Computational Statistics and Data Analysis. 129, p. 1-13 13 p.

Research output: Contribution to journalArticle

Variable Selection
Scaling
Dimension Reduction
Side Information
Multivariate Regression

Blessing of massive scale: spatial graphical model estimation with a total cardinality constraint approach

Fang, X., Liu, H. & Wang, M., Jul 1 2019, In : Mathematical Programming. 176, 1-2, p. 175-205 31 p.

Research output: Contribution to journalArticle

Cardinality Constraints
Spatial Model
Graphical Models
Convex Geometry
Geometry
1 Citation (Scopus)

Cardiovascular and Metabolic Risk in Women in the First Year Postpartum: Allostatic Load as a Function of Race, Ethnicity, and Poverty Status

Shalowitz, M. U., Schetter, C. D., Hillemeier, M. M., Chinchilli, V., Adam, E. K., Hobel, C. J., Ramey, S. L., Vance, M. R., O'Campo, P., Thorp, J. M., Seeman, T. E. & Raju, T. N. K., Jan 1 2019, In : American Journal of Perinatology. 36, 10, p. 1079-1089 11 p.

Research output: Contribution to journalArticle

Allostasis
Poverty
Postpartum Period
Breast Feeding
Hispanic Americans

Changes in healthcare expenditures after the autism insurance mandate

Wang, L., Ma, J., Dholakia, R., Howells, C., Lu, Y., Chen, C., Li, R., Murray, M. & Leslie, D., Jan 1 2019, In : Research in Autism Spectrum Disorders. 57, p. 97-104 8 p.

Research output: Contribution to journalArticle

Autistic Disorder
Health Expenditures
Insurance
Delivery of Health Care
Insurance Carriers

Changes in Shear Modulus of the Lumbar Multifidus Muscle during Different Body Positions

Sadeghi, S., Quinlan, K., Eilertson, K. E., Billy, G. G., Bible, J., Sions, J. M. & Cortes, D. H., Aug 1 2019, In : Journal of Biomechanical Engineering. 141, 8, 081003.

Research output: Contribution to journalArticle

Paraspinal Muscles
Muscle
Elastic moduli
Muscles
Spine
Open Access
Clinical Trials
Survival
Neoplasms
Therapeutics
Insurance

Clustering via finite nonparametric ICA mixture models

Zhu, X. & Hunter, D. R., Mar 8 2019, In : Advances in Data Analysis and Classification. 13, 1, p. 65-87 23 p.

Research output: Contribution to journalArticle

Independent component analysis
Independent Component Analysis
Mixture Model
Clustering
Conditional Independence
Tensor Product
Regression Model
Identifiability
Interaction
Function Space

Comparative transcriptome analysis identifies differentially expressed genes between normal and late-blooming Siberian apricot

Wang, Z., Song, S., Sheng, S., Tian, J., Wu, R. & Pang, X., Dec 1 2019, In : Journal of Forestry Research. 30, 6, p. 2277-2288 12 p.

Research output: Contribution to journalArticle

transcriptomics
gene
genes
flowering
circadian rhythm
1 Citation (Scopus)

Computer Model Calibration Based on Image Warping Metrics: An Application for Sea Ice Deformation

Guan, Y., Sampson, C., Tucker, J. D., Chang, W., Mondal, A., Haran, M. & Sulsky, D., Sep 15 2019, In : Journal of Agricultural, Biological, and Environmental Statistics. 24, 3, p. 444-463 20 p.

Research output: Contribution to journalArticle

Image Warping
Sea Ice
Ice Cover
Sea ice
Model Calibration
2 Citations (Scopus)

Confronting models with data: The challenges of estimating disease spillover

Cross, P. C., Prosser, D. J., Ramey, A. M., Hanks, E. M. & Pepin, K. M., Sep 30 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1782, 20180435.

Research output: Contribution to journalReview article

Pathogens
pathogens
Livestock
Information Systems
prediction

Constructing a confidence interval for the fraction who benefit from treatment, using randomized trial data

Huang, E. J., Fang, X., Hanley, D. F. & Rosenblum, M., Jan 1 2019, (Accepted/In press) In : Biometrics.

Research output: Contribution to journalArticle

Randomized Trial
Potential Outcomes
Confidence interval
confidence interval
Confidence Intervals

Construction of optimal run order in design of experiments

Peng, J. & Lin, D. K. J., Jan 1 2019, In : Journal of Quality Technology. 51, 2, p. 159-170 12 p.

Research output: Contribution to journalArticle

Design of experiments
Traveling salesman problem
Experiments
4 Citations (Scopus)

Convergence Analysis of Deterministic Kernel-Based Quadrature Rules in Misspecified Settings

Kanagawa, M., Sriperumbudur, B. K. & Fukumizu, K., Jan 1 2019, (Accepted/In press) In : Foundations of Computational Mathematics.

Research output: Contribution to journalArticle

Quadrature Rules
Convergence Analysis
Quadrature
Sobolev spaces
Integrand
1 Citation (Scopus)

Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants

Yang, Z., Wafula, E. K., Kim, G., Shahid, S., McNeal, J. R., Ralph, P. E., Timilsena, P. R., Yu, W. B., Kelly, E. A., Zhang, H., Person, T. N., Altman, N. S., Axtell, M. J., Westwood, J. H. & dePamphilis, C. W., Sep 1 2019, In : Nature Plants. 5, 9, p. 991-1001 11 p.

Research output: Contribution to journalArticle

parasitic plants
nucleic acids
Cuscuta
Cuscuta campestris
parasites

Correction: Nutritional status in chronic spinal cord injury: a systematic review and meta-analysis (Spinal Cord, (2019), 57, 1, (3-17), 10.1038/s41393-018-0218-4)

Farkas, G. J., Pitot, M. A., Berg, A. & Gater, D., Mar 1 2019, In : Spinal Cord. 57, 3, 1 p.

Research output: Contribution to journalComment/debate

Quadriplegia
Energy Intake
Nutritional Status
Spinal Cord Injuries
Meta-Analysis
molecular ecology
Ecology
Single Nucleotide Polymorphism
phenotype
genomics
3 Citations (Scopus)

Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome

Postolache, T. T., del Bosque-Plata, L., Jabbour, S., Vergare, M., Wu, R. & Gragnoli, C., Apr 1 2019, In : American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 180, 3, p. 186-203 18 p.

Research output: Contribution to journalReview article

Type 2 Diabetes Mellitus
Comorbidity
Schizophrenia
Major Depressive Disorder
Genes

Covariate Information Matrix for Sufficient Dimension Reduction

Yao, W., Nandy, D., Lindsay, B. G. & Chiaromonte, F., Jan 1 2019, In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

Sufficient Dimension Reduction
Information Matrix
Covariates
Central Subspace
Reduction Method