Research Output 1973 2020

8 Citations (Scopus)

A unifying framework for bivalent multilocus linkage analysis of allotetraploids

Yang, X., Lv, Y., Pang, X., Tong, C., Wang, Z., Li, X., Feng, S., Tobias, C. M. & Wu, R., Jan 1 2013, In : Briefings in bioinformatics. 14, 1, p. 96-108 13 p., bbs011.

Research output: Contribution to journalArticle

Chromosomes
Diploidy
Panicum
Genetic Linkage
Tetraploidy
37 Citations (Scopus)

A unifying statistical model for QTL mapping of genotype X sex interaction for developmental trajectories

Zhao, W., Ma, C., Cheverud, J. M. & Wu, R., Jan 1 2005, In : Physiological genomics. 19, p. 218-227 10 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Statistical Models
Genotype
Growth
Sex Differentiation
930 Citations (Scopus)

A user's guide to the Encyclopedia of DNA elements (ENCODE)

Myers, R. M., Stamatoyannopoulos, J., Snyder, M., Dunham, I., Hardison, R. C., Bernstein, B. E., Gingeras, T. R., Kent, W. J., Birney, E., Wold, B., Crawford, G. E., Epstein, C. B., Shoresh, N., Ernst, J., Mikkelsen, T. S., Kheradpour, P., Zhang, X., Wang, L., Issner, R., Coyne, M. J. & 295 others, Durham, T., Ku, M., Truong, T., Ward, L. D., Altshuler, R. C., Lin, M. F., Kellis, M., Davis, C. A., Kapranov, P., Dobin, A., Zaleski, C., Schlesinger, F., Batut, P., Chakrabortty, S., Jha, S., Lin, W., Drenkow, J., Wang, H., Bell, K., Bell, I., Gao, H., Dumais, E., Dumais, J., Antonarakis, S. E., Ucla, C., Borel, C., Guigo, R., Djebali, S., Lagarde, J., Kingswood, C., Ribeca, P., Sammeth, M., Alioto, T., Merkel, A., Tilgner, H., Carninci, P., Hayashizaki, Y., Lassmann, T., Takahashi, H., Abdelhamid, R. F., Hannon, G., Fejes, K. T., Preall, J., Gordon, A., Sotirova, V., Reymond, A., Howald, C., Graison, E. A. Y., Chrast, J., Ruan, Y., Ruan, X., Shahab, A., Poh, W. T., Wei, C. L., Furey, T. S., Boyle, A. P., Sheffield, N. C., Song, L., Shibata, Y., Vales, T., Winter, D., Zhang, Z., London, D., Wang, T., Keefe, D., Iyer, V. R., Lee, B. K., McDaniell, R. M., Liu, Z., Battenhouse, A., Bhinge, A. A., Lieb, J. D., Grasfeder, L. L., Showers, K. A., Giresi, P. G., Kim, S. K. C., Shestak, C., Pauli, F., Reddy, T. E., Gertz, J., Partridge, E. C., Jain, P., Sprouse, R. O., Bansal, A., Pusey, B., Muratet, M. A., Varley, K. E., Bowling, K. M., Newberry, K. M., Nesmith, A. S., Dilocker, J. A., Parker, S. L., Waite, L. L., Thibeault, K., Roberts, K., Absher, D. M., Mortazavi, A., Williams, B., Marinov, G., Trout, D., King, B., McCue, K., Kirilusha, A., DeSalvo, G., Fisher, K. A., Amrhein, H., Pepke, S., Vielmetter, J., Sherlock, G., Sidow, A., Batzoglou, S., Rauch, R., Kundaje, A., Libbrecht, M., Margulies, E. H., Parker, S. C. J., Elnitski, L., Green, E. D., Hubbard, T., Harrow, J., Searle, S., Kokocinski, F., Aken, B., Frankish, A., Hunt, T., Despacio-Reyes, G., Kay, M., Mukherjee, G., Bignell, A., Saunders, G., Boychenko, V., Brent, M., van Baren, M. J., Brown, R. H., Gerstein, M., Khurana, E., Balasubramanian, S., Lam, H., Cayting, P., Robilotto, R., Lu, Z., Derrien, T., Tanzer, A., Knowles, D. G., Mariotti, M., Haussler, D., Harte, R., Diekhans, M., Lin, M., Valencia, A., Tress, M., Landt, S. G., Raha, D., Shi, M., Euskirchen, G., Grubert, F., Kasowski, M., Lian, J., Lacroute, P., Xu, Y., Monahan, H., Patacsil, D., Slifer, T., Yang, X., Charos, A., Reed, B., Wu, L., Auerbach, R. K., Habegger, L., Hariharan, M., Rozowsky, J., Abyzov, A., Weissman, S. M., Struhl, K., Lamarre-Vincent, N., Lindahl-Allen, M., Miotto, B., Moqtaderi, Z., Fleming, J. D., Newburger, P., Farnham, P. J., Frietze, S., O'Geen, H., Xu, X., Blahnik, K. R., Cao, A. R., Iyengar, S., Kaul, R., Thurman, R. E., Wang, H., Navas, P. A., Sandstrom, R., Sabo, P. J., Weaver, M., Canfield, T., Lee, K., Neph, S., Roach, V., Reynolds, A., Johnson, A., Rynes, E., Giste, E., Vong, S., Neri, J., Frum, T., Nguyen, E. D., Ebersol, A. K., Sanchez, M. E., Sheffer, H. H., Lotakis, D., Haugen, E., Humbert, R., Kutyavin, T., Shafer, T., Noble, W. S., Dekker, J., Lajoie, B. R., Sanyal, A., Rosenbloom, K. R., Dreszer, T. R., Raney, B. J., Barber, G. P., Meyer, L. R., Sloan, C. A., Malladi, V. S., Cline, M. S., Learned, K., Swing, V. K., Zweig, A. S., Rhead, B., Fujita, P. A., Roskin, K., Karolchik, D., Kuhn, R. M., Wilder, S. P., Sobral, D., Herrero, J., Beal, K., Lukk, M., Brazma, A., Vaquerizas, J. M., Luscombe, N. M., Bickel, P. J., Boley, N., Brown, J. B., Li, Q., Huang, H., Sboner, A., Yip, K. Y., Cheng, C., Yan, K. K., Bhardwaj, N., Wang, J., Lochovsky, L., Jee, J., Gibson, T., Leng, J., Du, J., Harris, R. S., Song, G., Miller, W., Suh, B., Paten, B., Hoffman, M. M., Buske, O. J., Weng, Z., Dong, X., Wang, J., Xi, H., Tenenbaum, S. A., Doyle, F., Chittur, S., Penalva, L. O., Tullius, T. D., White, K. P., Karmakar, S., Victorsen, A., Jameel, N., Bild, N., Grossman, R. L., Collins, P. J., Trinklein, N. D., Giddings, M. C., Khatun, J., Maier, C., Wang, T., Whitfield, T. W., Chen, X., Yu, Y., Gunawardena, H., Feingold, E. A., Lowdon, R. F., Dillon, L. A. L., Good, P. J. & Risk, B., Apr 1 2011, In : PLoS biology. 9, 4, e1001046.

Research output: Contribution to journalArticle

Encyclopedias
Human Genome
Genes
DNA
genome
1 Citation (Scopus)

Autarky and material contingencies in Italian architectural debate (1936-1954)

Aviles Rincon, L., Dec 1 2009, In : Footprint. 4, p. 21-34 14 p.

Research output: Contribution to journalArticle

Economics
Iron
Steel
Autarky
Contingency

Author Correction: Two-level factorial experiments (Nature Methods, (2019), 16, 3, (211-212), 10.1038/s41592-019-0335-9)

Smucker, B., Krzywinski, M. & Altman, N., May 1 2019, In : Nature methods. 16, 5, 1 p.

Research output: Contribution to journalComment/debate

Open Access
HTML
Experiments

Author Correction: Tabular data (Nature Methods, (2017), 14, 4, (329-330), 10.1038/nmeth.4239)

Altman, N. S. & Krzywinski, M., Jul 1 2019, In : Nature methods. 16, 7, 1 p.

Research output: Contribution to journalComment/debate

Open Access
10 Citations (Scopus)
Thrombosis
Databases
Liver
Portal Vein
End Stage Liver Disease
37 Citations (Scopus)

Autologistic models for binary data on a lattice

Hughes, J., Haran, M. & Caragea, P. C., Nov 1 2011, In : Environmetrics. 22, 7, p. 857-871 15 p.

Research output: Contribution to journalArticle

Binary Data
Pseudo-likelihood
Spatial Dependence
Model
Perfect Sampling
5 Citations (Scopus)

Automated factor slice sampling

Tibbits, M. M., Groendyke, C., Haran, M. & Liechty, J. C., Jan 1 2014, In : Journal of Computational and Graphical Statistics. 23, 2, p. 543-563 21 p.

Research output: Contribution to journalArticle

Slice
Markov Chain Monte Carlo Algorithms
Parameter Tuning
Univariate
Tuning

Automated scoring of polygraph data

Slavkovic, A. B., Jan 1 2003, Statistical Data Mining and Knowledge Discovery. CRC Press, p. 135-154 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Logistics
Statistical methods
Scoring
Data collection
Incidents

Automatic and computationally efficient method for model selection in inertial sensor calibration

Molinari, R., Balamuta, J., Guerrier, S., Zhang, X. & Skaloud, J., Jan 1 2015, 28th International Technical Meeting of the Satellite Division of the Institute of Navigation, ION GNSS 2015. Institute of Navigation, p. 2003-2006 4 p. (28th International Technical Meeting of the Satellite Division of the Institute of Navigation, ION GNSS 2015; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Calibration
Sensors
Computational efficiency
Identification (control systems)
Navigation
10 Citations (Scopus)

Automatic Identification and Calibration of Stochastic Parameters in Inertial Sensors

Guerrier, S., Molinari, R. & Skaloud, J., Dec 1 2015, In : Navigation, Journal of the Institute of Navigation. 62, 4, p. 265-272 8 p.

Research output: Contribution to journalArticle

Calibration
Sensors
Random processes
MEMS
Time series
35 Citations (Scopus)

Automatic image semantic interpretation using social action and tagging data

Sawant, N., Li, J. & Wang, J., Jan 1 2011, In : Multimedia Tools and Applications. 51, 1, p. 213-246 34 p.

Research output: Contribution to journalArticle

Semantics
Electric fuses
Human computer interaction
Data mining
Labels
847 Citations (Scopus)
Statistical Modeling
Random processes
Linguistics
Indexing
Stochastic Processes
1 Citation (Scopus)

Automatic structure discovery for varying-coefficient partially linear models

Yang, G., Sun, Y. & Cui, X., Aug 3 2017, In : Communications in Statistics - Theory and Methods. 46, 15, p. 7703-7716 14 p.

Research output: Contribution to journalArticle

Partially Linear Model
Varying Coefficients
Covariates
Nonlinear Effects
Penalized Regression
1 Citation (Scopus)

Autoregressive Planet Search: Methodology

Caceres, G. A., Feigelson, E. D., Babu, G. J., Bahamonde, N., Christen, A., Bertin, K., Meza, C. & Curé, M., Jan 1 2019, In : Astronomical Journal. 158, 2, 57.

Research output: Contribution to journalArticle

transit
planets
planet
methodology
light curve
2 Citations (Scopus)

Autoregressive Planet Search: Feasibility Study for Irregular Time Series

Stuhr, A. M., Feigelson, E. D., Caceres, G. A. & Hartman, J. D., Jan 1 2019, In : Astronomical Journal. 158, 2, 59.

Research output: Contribution to journalArticle

feasibility study
planets
planet
time series
transit
2 Citations (Scopus)

Autoregressive Planet Search: Application to the Kepler Mission

Caceres, G. A., Feigelson, E. D., Babu, G. J., Bahamonde, N., Christen, A., Bertin, K., Meza, C. & Curé, M., Jan 1 2019, In : Astronomical Journal. 158, 2, 58.

Research output: Contribution to journalArticle

Kepler mission
planets
planet
transit
light curve
9 Citations (Scopus)

Autoregressive times series methods for time domain astronomy

Feigelson, E. D., Jogesh Babu, G. & Caceres, G. A., Aug 7 2018, In : Frontiers in Physics. 6, AUG, 80.

Research output: Contribution to journalArticle

Astronomy
Autoregressive Time Series
ARIMA
astronomy
Time Domain
8 Citations (Scopus)

A validated information criterion to determine the structural dimension in dimension reduction models

Ma, Y. & Zhang, X., Jan 1 2015, In : Biometrika. 102, 2, p. 409-420 12 p.

Research output: Contribution to journalArticle

Information Criterion
Dimension Reduction
Sufficient Dimension Reduction
Model
Model Evaluation
5 Citations (Scopus)

A varying threshold method for ChIP peak-calling using multiple sources of information

Chen, K. B. & Zhang, Y., Sep 4 2010, In : Bioinformatics. 26, 18, p. i504-i510 btq379.

Research output: Contribution to journalArticle

Chromatin Immunoprecipitation
Chromatin
Protein Binding
Proteins
Protein
38 Citations (Scopus)

Average effect of a mutation in lignin biosynthesis in loblolly pine

Wu, R., Remington, D. L., MacKay, J. J., McKeand, S. E. & O'Malley, D. M., Jan 1 1999, In : Theoretical and Applied Genetics. 99, 3-4, p. 705-710 6 p.

Research output: Contribution to journalArticle

Pinus taeda
Lignin
cinnamyl alcohol dehydrogenase
lignin
biosynthesis

Averaging almost-periodic functions and finite-dimensional unitary representations on free groups

Gorbis, A. & Tempelman, A., Oct 1 1988, In : Lithuanian Mathematical Journal. 28, 4, p. 332-335 4 p.

Research output: Contribution to journalArticle

Almost Periodic Functions
Unitary Representation
Free Group
Averaging
6 Citations (Scopus)

Averaging sequences and modulated ergodic theorems for weakly almost periodic group representations

Lin, M. & Tempelman, A., Jan 1 1999, In : Journal d'Analyse Mathematique. 77, p. 237-268 32 p.

Research output: Contribution to journalArticle

Periodic Group
Group Representation
Ergodic Theorem
Almost Periodic
Averaging
52 Citations (Scopus)

A weighted concordance correlation coefficient for repeated measurement designs

Chinchilli, V. M., Martel, J. K., Kumanyika, S. & Lloyd, T., Mar 1 1996, In : Biometrics. 52, 1, p. 341-353 13 p.

Research output: Contribution to journalArticle

Repeated Measurement Designs
Concordance
Correlation coefficient
Adipose Tissue
Eating
92 Citations (Scopus)

Azithromycin or montelukast as inhaled corticosteroid-sparing agents in moderate-to-severe childhood asthma study

Strunk, R. C., Bacharier, L. B., Phillips, B. R., Szefler, S. J., Zeiger, R. S., Chinchilli, V., Martinez, F. D., Lemanske, R. F., Taussig, L. M., Mauger, D., Morgan, W. J., Sorkness, C. A., Paul, I., Guilbert, T., Krawiec, M., Covar, R. & Larsen, G., Jan 1 2008, In : Journal of Allergy and Clinical Immunology. 122, 6

Research output: Contribution to journalArticle

montelukast
Azithromycin
Budesonide
Adrenal Cortex Hormones
Asthma

Bacterial genetic architecture of ecological interactions in co-culture by GWAS-taking Escherichia coli and Staphylococcus aureus as an example

He, X., Jin, Y., Ye, M., Chen, N., Zhu, J., Wang, J., Jiang, L. & Wu, R., Nov 27 2017, In : Frontiers in Microbiology. 8, NOV, 2332.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Coculture Techniques
Single Nucleotide Polymorphism
Staphylococcus aureus
Escherichia coli
13 Citations (Scopus)

Balanced incomplete Latin square designs

Ai, M., Li, K., Liu, S. & Lin, D. K. J., Sep 1 2013, In : Journal of Statistical Planning and Inference. 143, 9, p. 1575-1582 8 p.

Research output: Contribution to journalArticle

Magic square
Orthogonal Latin Squares
Balanced Design
Relative Efficiency
Treatment Effects
43 Citations (Scopus)

Balancing Covariates via Propensity Score Weighting

Li, F., Morgan, K. L. & Zaslavsky, A. M., Jan 2 2018, In : Journal of the American Statistical Association. 113, 521, p. 390-400 11 p.

Research output: Contribution to journalArticle

Propensity Score
Balancing
Weighting
Covariates
Overlap
96 Citations (Scopus)

Bandwidth selection for kernel distribution function estimation

Altman, N. S. & Léger, C., Aug 1 1995, In : Journal of Statistical Planning and Inference. 46, 2, p. 195-214 20 p.

Research output: Contribution to journalArticle

Bandwidth Selection
Function Estimation
Kernel Function
Distribution functions
Distribution Function
11 Citations (Scopus)

Bandwidth selection in an EM-like algorithm for nonparametric multivariate mixtures

Benaglia, T., Chauveau, D. & Hunter, D. R., Jan 1 2011, Nonparametric Statistics and Mixture Models: A Festschrift in Honor of Thomas P Hettmansperger. World Scientific Publishing Co., p. 15-27 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bandwidth Selection
Bandwidth
Repeated Measures
EM Algorithm
Identically distributed
47 Citations (Scopus)

Baseline serum NTx levels are prognostic in metastatic breast cancer patients with bone-only metastasis

Ali, S. M., Demers, L. M., Leitzel, K., Harvey, H. A., Clemens, D., Mallinak, N., Engle, L., Chinchilli, V., Costa, L., Brady, C., Seaman, J. & Lipton, A., Mar 1 2004, In : Annals of Oncology. 15, 3, p. 455-459 5 p.

Research output: Contribution to journalArticle

Breast Neoplasms
Neoplasm Metastasis
Bone and Bones
Serum
Survival

Batches and Blocks, Sample Pools and Subsamples in the Design and Analysis of Gene Expression Studies

Altman, N. S., Nov 2 2009, Batch Effects and Noise in Microarray Experiments: Sources and Solutions. Wiley-Blackwell, p. 33-50 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene expression
Linear Models
Research Personnel
Gene Expression
Microarrays

Baum-Welch algorithm on directed acyclic graph for mixtures with latent Bayesian networks

Li, J. & Lin, L., Jan 1 2017, In : Stat. 6, 1, p. 303-314 12 p.

Research output: Contribution to journalArticle

Directed Acyclic Graph
Bayesian Networks
Expectation Maximization
Expectation-maximization Algorithm
Exact Algorithms
39 Citations (Scopus)

Bayes estimation of component-reliability from masked system-life data

Lin, D. K. J., Usher, J. S. & Guess, F. M., Dec 1 1996, In : IEEE Transactions on Reliability. 45, 2, p. 233-237 5 p.

Research output: Contribution to journalArticle

Knowledge engineering
Maximum likelihood estimation
Engineers
13 Citations (Scopus)

Bayesian analysis for weighted mean-squared error in dual response surface optimization

Jeong, I. J., Kim, K. J. & Lin, D. K. J., Jul 1 2010, In : Quality and Reliability Engineering International. 26, 5, p. 417-430 14 p.

Research output: Contribution to journalArticle

Probability distributions
Mean squared error
Response surface
Bayesian analysis
Relative weight
6 Citations (Scopus)

Bayesian analysis of genome-wide inflammatory bowel disease data sets reveals new risk loci /631/208/205/2138 /631/208/176 article

Zhang, Y., Tian, L., Sleiman, P., Ghosh, S. & Hakonarson, H., Feb 1 2018, In : European Journal of Human Genetics. 26, 2, p. 265-274 10 p.

Research output: Contribution to journalArticle

Bayes Theorem
Inflammatory Bowel Diseases
Genome
Single Nucleotide Polymorphism
Genome-Wide Association Study
Generalized Linear Mixed Model
Moving Average
Bayesian Analysis
Laplace
Random Field
22 Citations (Scopus)

Bayesian combination of state polls and election forecasts

Lock, K. & Gelman, A., Mar 25 2010, In : Political Analysis. 18, 3, p. 337-348 12 p.

Research output: Contribution to journalArticle

election
voter
uncertainty
public opinion
performance
33 Citations (Scopus)

Bayesian D-optimal supersaturated designs

Jones, B., Lin, D. K. J. & Nachtsheim, C. J., Jan 1 2008, In : Journal of Statistical Planning and Inference. 138, 1, p. 86-92 7 p.

Research output: Contribution to journalArticle

Supersaturated Design
D-optimal Design
Sample Size
D-optimality
Quality Improvement
3 Citations (Scopus)

Bayesian epistasis association mapping via SNP imputation

Zhang, Y., Apr 1 2011, In : Biostatistics. 12, 2, p. 211-222 12 p.

Research output: Contribution to journalArticle

Epistasis
Single nucleotide Polymorphism
Imputation
Interaction
Case-control
7 Citations (Scopus)

Bayesian estimates of astronomical time delays between gravitationally lensed stochastic light curves

Tak, H., Mandel, K., Van Dyk, D. A., Kashyap, V. L., Meng, X. L. & Siemiginowska, A., Sep 2017, In : Annals of Applied Statistics. 11, 3, p. 1309-1348 40 p.

Research output: Contribution to journalArticle

Quasars
Time Delay
Time delay
Profile Likelihood
Curve
21 Citations (Scopus)

Bayesian group lasso for nonparametric varying-coefficient models with application to functional genome-wide association studies

Li, J., Wang, Z., Li, R. & Wu, R., Jun 1 2015, In : Annals of Applied Statistics. 9, 2, p. 640-664 25 p.

Research output: Contribution to journalArticle

Varying Coefficient Model
Lasso
Nonparametric Model
Genome
Genes
3 Citations (Scopus)

Bayesian hierarchical analysis of within‐units variances in repeated measures experiments

Have, T. R. T. & Chinchilli, V. M., Sep 30 1994, In : Statistics in Medicine. 13, 18, p. 1841-1852 12 p.

Research output: Contribution to journalArticle

Partial Likelihood
Repeated Measures
Bayes Theorem
Analysis of variance
Analysis of Variance
25 Citations (Scopus)

Bayesian Inference for Contact Networks Given Epidemic Data

Groendyke, C., Welch, D. & Hunter, D. R., Sep 1 2011, In : Scandinavian Journal of Statistics. 38, 3, p. 600-616 17 p.

Research output: Contribution to journalArticle

Bayesian inference
Contact
Estimate
Monte Carlo Integration
Random Networks
3 Citations (Scopus)

Bayesian inference for randomized clinical trials with treatment failures

Shaffer, M. L. & Chinchilli, V. M., Apr 30 2004, In : Statistics in Medicine. 23, 8, p. 1215-1228 14 p.

Research output: Contribution to journalArticle

Randomized Clinical Trial
Bayesian inference
Treatment Failure
Randomized Controlled Trials
Clinical Trials
2 Citations (Scopus)

Bayesian Inference in the Presence of Intractable Normalizing Functions

Park, J. & Haran, M., Jul 3 2018, In : Journal of the American Statistical Association. 113, 523, p. 1372-1390 19 p.

Research output: Contribution to journalReview article

Bayesian inference
Exponential Model
Graph Model
Bayesian Analysis
Point Process
312 Citations (Scopus)

Bayesian inference of epistatic interactions in case-control studies

Zhang, Y. & Liu, J. S., Sep 1 2007, In : Nature Genetics. 39, 9, p. 1167-1173 7 p.

Research output: Contribution to journalArticle

Case-Control Studies
Genome
Markov Chains
Bayes Theorem
Chromosome Mapping
28 Citations (Scopus)

Bayesian matching for X-ray and infrared sources in the MYStIX project

Naylor, T., Broos, P. S. & Feigelson, E. D., Dec 1 2013, In : Astrophysical Journal, Supplement Series. 209, 2, 30.

Research output: Contribution to journalArticle

star distribution
x rays
stars
astronomical catalogs
catalogs
6 Citations (Scopus)

Bayesian modeling for genetic association in case-control studies: Accounting for unknown population substructure

Zhang, L., Mukherjee, B., Ghosh, M. & Wu, R., Dec 1 2006, In : Statistical Modelling. 6, 4, p. 352-372 21 p.

Research output: Contribution to journalArticle

Genetic Association
Bayesian Modeling
Case-control Study
Substructure
Association Model