Research Output 1973 2020

3 Citations (Scopus)

A disequilibrium model for detecting genetic mutations for cancer

Li, Y., Ma, C., Wang, Z., Chen, G., Ahn, K., Lazarus, P. & Wu, R., Aug 1 2010, In : Journal of Theoretical Biology. 265, 3, p. 218-224 7 p.

Research output: Contribution to journalArticle

Genetic Models
Cancer
Mutation
Genes
mutation

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

Dissection
quantitative trait loci
DNA Shuffling
Genetic Selection
Quantitative Trait Loci
3 Citations (Scopus)

A distance for HMMS based on aggregated wasserstein metric and state registration

Chen, Y., Ye, J. & Li, J., Jan 1 2016, Computer Vision - 14th European Conference, ECCV 2016, Proceedings. Sebe, N., Leibe, B., Matas, J. & Welling, M. (eds.). Springer Verlag, p. 451-466 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9910 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Wasserstein Metric
Gaussian distribution
Registration
Optimal Transport
Hidden Markov models
1 Citation (Scopus)

Admissibility of MLE for simultaneous estimation in negative binomial problems

Chow, M., Jan 1 1990, In : Journal of Multivariate Analysis. 33, 2, p. 212-219 8 p.

Research output: Contribution to journalArticle

Squared Error Loss
Simultaneous Estimation
Negative Binomial
Maximum likelihood estimation
Admissibility

Admissibility of the nonparametric analog of the Pitman estimate in the case of one unknown parameter

Tempelman, A. & Jaura, J., Jan 1 1988, In : Lithuanian Mathematical Journal. 28, 1, p. 80-89 10 p.

Research output: Contribution to journalArticle

Admissibility
Unknown Parameters
Analogue
Estimate

A Drive to Driven Model of Mapping Intraspecific Interaction Networks

Jiang, L., Xu, J., Sang, M., Zhang, Y., Ye, M., Zhang, H., Wu, B., Zhu, Y., Xu, P., Tai, R., Zhao, Z., Jiang, Y., Dong, C., Sun, L., Griffin, C. H., Gragnoli, C. & Wu, R., Dec 20 2019, In : iScience. 22, p. 109-122 14 p.

Research output: Contribution to journalArticle

Open Access
intraspecific interaction
phenotype
altruism
community ecology
mutualism
80 Citations (Scopus)

Adult female hip bone density reflects teenage sports-exercise patterns but not teenage calcium intake

Lloyd, T., Chinchilli, V. M., Johnson-Rollings, N., Kieselhorst, K., Eggli, D. F. & Marcus, R., Jul 2000, In : Pediatrics. 106, 1 I, p. 40-44 5 p.

Research output: Contribution to journalArticle

Pelvic Bones
Bone Density
Sports
Exercise
Calcium

Advancing science and technology with big data analytics

Li, J., Jun 1 2018, In : Statistical Analysis and Data Mining. 11, 3, 1 p.

Research output: Contribution to journalEditorial

Big data
40 Citations (Scopus)

Advancing the understanding of craving during smoking cessation attempts: A demonstration of the time-varying effect model

Lanza, S. T., Vasilenko, S. A., Liu, X., Li, R. & Piper, M. E., Jan 1 2014, In : Nicotine and Tobacco Research. 16, SUPPL2, p. S127-S134

Research output: Contribution to journalArticle

Smoking Cessation
Tobacco Use Disorder
Placebos
Group Psychotherapy
Craving
37 Citations (Scopus)

A DYNAMICAL ANALYSIS of the KEPLER-80 SYSTEM of FIVE TRANSITING PLANETS

Macdonald, M. G., Ragozzine, D., Fabrycky, D. C., Ford, E. B., Holman, M. J., Isaacson, H. T., Lissauer, J. J., Lopez, E. D., Mazeh, T., Rogers, L., Rowe, J. F., Steffen, J. H. & Torres, G., Oct 2016, In : Astronomical Journal. 152, 4, 105.

Research output: Contribution to journalArticle

planets
planet
eccentricity
planetary systems
transit time
7 Citations (Scopus)

A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing

Zhang, Y., Apr 1 2013, In : Bioinformatics. 29, 7, p. 878-885 8 p.

Research output: Contribution to journalArticle

Haplotype
Bayesian Model
Haplotypes
Markov Model
Sequencing
14 Citations (Scopus)

A dynamic framework for quantifying the genetic architecture of phenotypic plasticity

Wang, Z., Pang, X., Lv, Y., Xu, F., Zhou, T., Li, X., Feng, S., Li, J., Li, Z. & Wu, R., Jan 1 2013, In : Briefings in bioinformatics. 14, 1, p. 82-95 14 p., bbs009.

Research output: Contribution to journalReview article

Plasticity
Quantitative Trait Loci
Dynamic models
Genes
Genotype

A Dynamic Individual-Based Model for High-Resolution Ant Interactions

Wikle, N. B., Hanks, E. M. & Hughes, D. P., Dec 1 2019, In : Journal of Agricultural, Biological, and Environmental Statistics. 24, 4, p. 589-609 21 p.

Research output: Contribution to journalArticle

Individual-based Model
individual-based model
Ants
trophallaxis
ant
7 Citations (Scopus)

A dynamic model for functional mapping of biological rhythms

Fu, G., Luo, J., Berg, A., Wang, Z., Li, J., Das, K., Li, R. & Wu, R., Jan 1 2011, In : Journal of Biological Dynamics. 5, 1, p. 84-101 18 p.

Research output: Contribution to journalArticle

biological rhythm
biological rhythms
dynamic models
quantitative trait loci
gene interaction
49 Citations (Scopus)

A dynamic model for genome-wide association studies

Das, K., Li, J., Wang, Z., Tong, C., Fu, G., Li, Y., Xu, M., Ahn, K., Mauger, D., Li, R. & Wu, R., Jun 1 2011, In : Human genetics. 129, 6, p. 629-639 11 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Genes
180 Citations (Scopus)

Aesthetics and emotions in images

Joshi, D., Datta, R., Fedorovskaya, E., Luong, Q. T., Wang, J. Z., Li, J. & Luo, J., Sep 2011, In : IEEE Signal Processing Magazine. 28, 5, p. 94-115 22 p., 5999579.

Research output: Contribution to journalArticle

Painting
Photography
Real-world Applications
Aesthetics
Emotion
61 Citations (Scopus)

A fast, consistent kernel two-sample test

Gretton, A., Fukumizu, K., Harchaoui, Z. & Sriperumbudur, B. K., Dec 1 2009, Advances in Neural Information Processing Systems 22 - Proceedings of the 2009 Conference. p. 673-681 9 p. (Advances in Neural Information Processing Systems 22 - Proceedings of the 2009 Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hilbert spaces
Statistics
Random variables
Probability distributions
Costs
19 Citations (Scopus)

A fast algorithm for detecting gene-gene interactions in genome-wide association studies

Li, J., Zhong, W., Li, R. & Wu, R., Dec 1 2014, In : Annals of Applied Statistics. 8, 4, p. 2292-2318 27 p.

Research output: Contribution to journalArticle

Single nucleotide Polymorphism
Fast Algorithm
Nucleotides
Polymorphism
Genome
35 Citations (Scopus)

A fast algorithm for functional mapping of complex traits

Zhao, W., Wu, R., Ma, C. X. & Casella, G., Aug 1 2004, In : Genetics. 167, 4, p. 2133-2137 5 p.

Research output: Contribution to journalArticle

Software
5 Citations (Scopus)

A fast piece-wise deformable method for multi-modality image registration

Gopalakrishnan, G., Sriperumbudur, B. K., Narayanan, A. & Mullick, R., Dec 1 2005, Proceedings - 34th Applied Imagery and Pattern Recognition Workshop: Multi-modal Imaging. Vol. 2005. p. 114-119 6 p. 1612810

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image registration
Image fusion
Medical imaging
Fluids
117 Citations (Scopus)

A first comparison of Kepler planet candidates in single and multiple systems

Latham, D. W., Rowe, J. F., Quinn, S. N., Batalha, N. M., Borucki, W. J., Brown, T. M., Bryson, S. T., Buchhave, L. A., Caldwell, D. A., Carter, J. A., Christiansen, J. L., Ciardi, D. R., Cochran, W. D., Dunham, E. W., Fabrycky, D. C., Ford, E. B., Gautier, T. N., Gilliland, R. L., Holman, M. J., Howell, S. B. & 13 others, Ibrahim, K. A., Isaacson, H., Jenkins, J. M., Koch, D. G., Lissauer, J. J., Marcy, G. W., Quintana, E. V., Ragozzine, D., Sasselov, D., Shporer, A., Steffen, J. H., Welsh, W. F. & Wohler, B., May 10 2011, In : Astrophysical Journal Letters. 732, 2 PART II, L24.

Research output: Contribution to journalArticle

planets
planet
census
Neptune (planet)
comparison
7 Citations (Scopus)
Phenotype
Sampling Studies
Genetic Models
Population Genetics
Sample Size
8 Citations (Scopus)

A food-based approach that targets interleukin-6, a key regulator of chronic intestinal inflammation and colon carcinogenesis

Sido, A., Radhakrishnan, S., Kim, S. W., Eriksson, E., Shen, F., Li, Q., Bhat, V., Reddivari, L. & Vanamala, J. K. P., May 1 2017, In : Journal of Nutritional Biochemistry. 43, p. 11-17 7 p.

Research output: Contribution to journalArticle

Nutrition
Interleukin-6
Colon
Carcinogenesis
Diet

A frailty model in crossover studies with time-to-event response variable

Shvartsman, I., Chinchilli, V. & Liu, H. P., Jul 2 2012, In : Communications in Statistics: Simulation and Computation. 41, 10, p. 1960-1969 10 p.

Research output: Contribution to journalArticle

Crossover Design
Frailty Model
Crossover
Asthma
Frailty
16 Citations (Scopus)

A framework for inertial sensor calibration using complex stochastic error models

Stebler, Y., Guerrier, S., Skaloud, J. & Victoria-Feser, M. P., Sep 19 2012, Proceedings of the 2012 IEEE/ION Position, Location and Navigation Symposium, PLANS 2012. p. 849-861 13 p. 6236827. (Record - IEEE PLANS, Position Location and Navigation Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Calibration
Sensors
Trajectories
Kalman filters
MEMS

A framework for parameter optimization in mutual information (MI)-based registration algorithms

Gopalakrishnan, G., Sriperumbudur, B. K., Mullick, R., Narayanan, A. & Suryanarayanan, S., Jun 22 2006, Medical Imaging 2006: Image Processing. 61442Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6144 II).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

X Ray Tomography
Positron-Emission Tomography
Software
Positron emission tomography
optimization
3 Citations (Scopus)

A framework to monitor environment-induced major genes for development trajectories: Implication for a prenatal cocaine exposure study

Hou, W., Garvan, C. W., Littell, R. C., Behnke, M., Eyler, F. D. & Wu, R., Dec 15 2006, In : Statistics in Medicine. 25, 23, p. 4020-4035 16 p.

Research output: Contribution to journalArticle

Cocaine
Monitor
Trajectory
Gene
Genes
19 Citations (Scopus)

A functional data analysis approach for genetic association studies

Reimherr, M. & Nicolae, D., Mar 2014, In : Annals of Applied Statistics. 8, 1, p. 406-429 24 p.

Research output: Contribution to journalArticle

Genetic Association
Functional Data Analysis
Asthma
Association reactions
Genes
28 Citations (Scopus)

A functional generalized method of moments approach for longitudinal studies with missing responses and covariate measurement error

Yi, G. Y., Ma, Y. & Carroll, R. J., Mar 1 2012, In : Biometrika. 99, 1, p. 151-165 15 p.

Research output: Contribution to journalArticle

Generalized Method of Moments
Longitudinal Study
longitudinal studies
Method of moments
Measurement errors
9 Citations (Scopus)

A functional toll-interacting protein variant is associated with bacillus calmette-guérin-specific immune responses and tuberculosis

Shah, J. A., Musvosvi, M., Shey, M., Horne, D. J., Wells, R. D., Peterson, G. J., Cox, J. S., Daya, M., Hoal, E. G., Lin, L., Gottardo, R., Hanekom, W. A., Scriba, T. J., Hatherill, M. & Hawn, T. R., Aug 15 2017, In : American journal of respiratory and critical care medicine. 196, 4, p. 502-511 10 p.

Research output: Contribution to journalArticle

Bacillus
Tuberculosis
Proteins
Monocytes
Adaptive Immunity
38 Citations (Scopus)

Age gradients in the stellar populations of massive star forming regions based on a new stellar chronometer

Getman, K. V., Feigelson, E. D., Kuhn, M. A., Broos, P. S., Townsley, L. K., Naylor, T., Povich, M. S., Luhman, K. L. & Garmire, G. P., Jun 1 2014, In : Astrophysical Journal. 787, 2, 108.

Research output: Contribution to journalArticle

chronometers
massive stars
gradients
stars
x rays
4 Citations (Scopus)

A general class of correlation coefficients for the 2 × 2 crossover design

Chinchilli, V. M., Phillips, B. R., Mauger, D. T. & Szefler, S. J., Oct 1 2005, In : Biometrical Journal. 47, 5, p. 644-653 10 p.

Research output: Contribution to journalArticle

Crossover Design
Correlation coefficient
Pearson Correlation
Statistics
Moment
17 Citations (Scopus)

A general construction method for mixed-level supersaturated design

Yamada, S., Matsui, M., Matsui, T., Lin, D. K. J. & Takahashi, T., Jan 10 2006, In : Computational Statistics and Data Analysis. 50, 1 SPEC. ISS., p. 254-265 12 p.

Research output: Contribution to journalArticle

Supersaturated Design
Pairwise
Flexibility
Upper bound
Design
89 Citations (Scopus)

A General Framework for Analyzing the Genetic Architecture of Developmental Characteristics

Wu, R., Ma, C. X., Lin, M. & Casella, G., Mar 1 2004, In : Genetics. 166, 3, p. 1541-1551 11 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Growth
Growth and Development
Statistical Models
Phenotype
18 Citations (Scopus)

A general framework for statistical linkage analysis in multivalent tetraploids

Wu, R. & Ma, C. X., Jun 1 2005, In : Genetics. 170, 2, p. 899-907 9 p.

Research output: Contribution to journalArticle

Polyploidy
Tetraploidy
Germ Cells
Genetic Recombination
Chromosomes
3 Citations (Scopus)

A generalization of an integral arising in the theory of distance correlation

Dueck, J., Edelmann, D. & Richards, D., Feb 1 2015, In : Statistics and Probability Letters. 97, p. 116-119 4 p.

Research output: Contribution to journalArticle

Random variable
Statistics
Generalise
Generalization
Concepts
116 Citations (Scopus)

A generalized concordance correlation coefficient for continuous and categorical data

King, T. & Chinchilli, V., Jul 30 2001, In : Statistics in Medicine. 20, 14, p. 2131-2147 17 p.

Research output: Contribution to journalArticle

Nominal or categorical data
Concordance
Correlation coefficient
Expected Value
Categorical
1 Citation (Scopus)

A generalized correlation coefficient for the general two-treatment crossover design

Chen, V. Y. J. & Chinchilli, V., Jan 1 2010, In : Communications in Statistics - Theory and Methods. 39, 11, p. 2063-2080 18 p.

Research output: Contribution to journalArticle

Crossover Design
Correlation coefficient
Methodology
Asymptotic Theory
Clinical Trials

A generalized likelihood ratio test for monitoring profile data

Liu, Y., Zhu, J. J. & Lin, D. K. J., Jan 1 2016, p. 309-325. 17 p.

Research output: Contribution to conferencePaper

Monitoring
Control charts
4 Citations (Scopus)

A generalized linear model for peak calling in ChIP-Seq data

Xu, J. & Zhang, Y., Jun 1 2012, In : Journal of Computational Biology. 19, 6, p. 826-838 13 p.

Research output: Contribution to journalArticle

Generalized Linear Model
Binding sites
Linear Models
DNA
Chip
10 Citations (Scopus)

A generalized product-limit estimator for truncated data

Akritas, M. G. & Lavalley, M. P., Sep 1 2005, In : Journal of Nonparametric Statistics. 17, 6, p. 643-663 21 p.

Research output: Contribution to journalArticle

Product-limit Estimator
Truncated Data
Estimator
Truncation
Asymptotic Optimality
11 Citations (Scopus)

A general model for detecting genetic determinants underlying longitudinal traits with unequally spaced measurements and nonstationary covariance structure

Hou, W., Garvan, C. W., Zhao, W., Behnke, M., Eyler, F. D. & Wu, R., Jul 1 2005, In : Biostatistics. 6, 3, p. 420-433 14 p.

Research output: Contribution to journalArticle

Genetic Models
Covariance Structure
Quantitative Trait Loci
Determinant
Growth
26 Citations (Scopus)

A general model for Multilocus Epistatic interactions in case-control studies

Wang, Z., Liu, T., Lin, Z., Hegarty, J., Koltun, W. A. & Wu, R., Oct 19 2010, In : PloS one. 5, 8, e11384.

Research output: Contribution to journalArticle

epistasis
case-control studies
Case-Control Studies
Inflammatory Bowel Diseases
Genes
66 Citations (Scopus)

A general polyploid model for analyzing gene segregation in outcrossing tetraploid species

Wu, R., Gallo-Meagher, M., Littell, R. C. & Zeng, Z. B., Nov 17 2001, In : Genetics. 159, 2, p. 869-882 14 p.

Research output: Contribution to journalArticle

Polyploidy
Tetraploidy
Chromosomes
Genes
Meiosis
8 Citations (Scopus)

A general quantitative genetic model for haplotyping a complex trait in humans

Wu, S., Yang, J., Wang, C. & Wu, R., Aug 1 2007, In : Current Genomics. 8, 5, p. 343-350 8 p.

Research output: Contribution to journalReview article

Genetic Models
Haplotypes
Single Nucleotide Polymorphism
Diploidy
Uncertainty
26 Citations (Scopus)

A General Statistical Framework for Mapping Quantitative Trait Loci in Nonmodel Systems: Issue for Characterizing Linkage Phases

Lin, M., Lou, X. Y., Chang, M. & Wu, R., Oct 1 2003, In : Genetics. 165, 2, p. 901-913 13 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Genetic Research
Chromosome Mapping
Uncertainty
Forests
17 Citations (Scopus)

A general statistical framework for unifying interval and linkage disequilibrium mapping: Toward high-resolution mapping of quantitative traits

Lou, X. Y., Casella, G., Todhunter, R. J., Yang, M. C. K. & Wu, R., Mar 1 2005, In : Journal of the American Statistical Association. 100, 469, p. 158-171 14 p.

Research output: Contribution to journalArticle

Linkage Disequilibrium
Quantitative Trait Loci
High Resolution
Interval
Population Structure
24 Citations (Scopus)

A general theory for nonlinear sufficient dimension reduction: Formulation and estimation

Lee, K. Y., Li, B. & Chiaromonte, F., Feb 1 2013, In : Annals of Statistics. 41, 1, p. 221-249 29 p.

Research output: Contribution to journalArticle

Sufficient Dimension Reduction
Formulation
Dimension Reduction
Estimator
Sliced Inverse Regression
75 Citations (Scopus)

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

Fungtammasan, A., Walsh, E., Chiaromonte, F., Eckert, K. A. & Makova, K. D., Jun 1 2012, In : Genome research. 22, 6, p. 993-1005 13 p.

Research output: Contribution to journalArticle

Aphidicolin
Chromosomal Instability
Human Genome
Genome
Logistic Models
28 Citations (Scopus)

A genome-wide association study of bronchodilator response in asthmatics

Duan, Q. L., Lasky-Su, J., Himes, B. E., Qiu, W., Litonjua, A. A., Damask, A., Lazarus, R., Klanderman, B., Irvin, C. G., Peters, S. P., Hanrahan, J. P., Lima, J. J., Martinez, F. D., Mauger, D., Chinchilli, V. M., Soto-Quiros, M., Avila, L., Celedón, J. C., Lange, C., Weiss, S. T. & 1 others, Tantisira, K. G., Feb 1 2014, In : Pharmacogenomics Journal. 14, 1, p. 41-47 7 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Bronchodilator Agents
Single Nucleotide Polymorphism
Asthma
Chromosomes, Human, Pair 10