Research Output

Ten Simple Rules for the Care and Feeding of Scientific Data

Goodman, A., Pepe, A., Blocker, A. W., Borgman, C. L., Cranmer, K., Crosas, M., Di Stefano, R., Gil, Y., Groth, P., Hedstrom, M., Hogg, D. W., Kashyap, V., Mahabal, A., Siemiginowska, A. & Slavkovic, A., Apr 2014, In : PLoS computational biology. 10, 4, e1003542.

Research output: Contribution to journalArticle

73 Scopus citations

Temporal variation and scale in movement-based resource selection functions

Hooten, M. B., Hanks, E. M., Johnson, D. S. & Alldredge, M. W., Jan 1 2014, In : Statistical Methodology. 17, C, p. 82-98 17 p.

Research output: Contribution to journalArticle

16 Scopus citations

Techniques for classifying executions of deployed software to support software engineering tasks

Haran, M., Karr, A., Last, M., Orso, A., Porter, A. A., Sanil, A. & Fouche, S., May 1 2007, In : IEEE Transactions on Software Engineering. 33, 5, p. 287-304 18 p.

Research output: Contribution to journalArticle

28 Scopus citations

Tea consumption and longitudinal change in high-density lipoprotein cholesterol concentration in Chinese adults

Huang, S., Li, J., Wu, Y., Ranjbar, S., Xing, A., Zhao, H., Wang, Y., Shearer, G. C., Bao, L., Lichtenstein, A. H., Wu, S. & Gao, X., Jul 1 2018, In : Journal of the American Heart Association. 7, 13, e008814.

Research output: Contribution to journalArticle

4 Scopus citations

Teaching computing in statistical theory courses

Hunter, D. R., Nov 1 2005, In : American Statistician. 59, 4, p. 327-333 7 p.

Research output: Contribution to journalReview article

T cell responses against mycobacterial lipids and proteins are poorly correlated in South African adolescents

Seshadri, C., Lin, L., Scriba, T. J., Peterson, G., Freidrich, D., Frahm, N., De Rosa, S. C., Moody, D. B., Prandi, J., Gilleron, M., Mahomed, H., Jiang, W., Finak, G., Hanekom, W. A., Gottardo, R., McElrath, M. J. & Hawn, T. R., Nov 15 2015, In : Journal of Immunology. 195, 10, p. 4595-4603 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Tapered covariance: Bayesian estimation and asymptotics

Shaby, B. & Ruppert, D., Jun 1 2012, In : Journal of Computational and Graphical Statistics. 21, 2, p. 433-452 20 p.

Research output: Contribution to journalArticle

37 Scopus citations

Tagging over time: Real-world image annotation by lightweight meta-learning

Datta, R., Joshi, D., Li, J. & Wang, J., Dec 1 2007, Proceedings of the Fifteenth ACM International Conference on Multimedia, MM'07. p. 393-402 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations

System life data analysis with dependent partial knowledge on the exact cause of system failure

Lin, D. K. J. & Guess, F. M., Mar 1994, In : Microelectronics Reliability. 34, 3, p. 535-544 10 p.

Research output: Contribution to journalArticle

36 Scopus citations

System for screening objectionable images

Wang, J., Li, J., Wiederhold, G. & Firschein, O., Oct 1 1998, In : Computer Communications. 21, 15, p. 1355-1360 6 p.

Research output: Contribution to journalArticle

109 Scopus citations

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells

Hardison, R. C., Zhang, Y., Keller, C. A., Xiang, G., Heuston, E. F., An, L., Lichtenberg, J., Giardine, B. M., Bodine, D., Mahony, S., Li, Q., Yue, F., Weiss, M. J., Blobel, G. A., Taylor, J., Hughes, J., Higgs, D. R. & Göttgens, B., Jan 1 2020, In : IUBMB Life. 72, 1, p. 27-38 12 p.

Research output: Contribution to journalReview article

Open Access

Systematic evaluation of factors influencing ChIP-seq fidelity

Chen, Y., Negre, N., Li, Q., Mieczkowska, J. O., Slattery, M., Liu, T., Zhang, Y., Kim, T. K., He, H. H., Zieba, J., Ruan, Y., Bickel, P. J., Myers, R. M., Wold, B. J., White, K. P., Lieb, J. D. & Liu, X. S., Jun 1 2012, In : Nature methods. 9, 6, p. 609-614 6 p.

Research output: Contribution to journalArticle

89 Scopus citations

Synthetic two-way contingency tables that preserve conditional frequencies

Slavković, A. B. & Lee, J., May 1 2010, In : Statistical Methodology. 7, 3, p. 225-239 15 p.

Research output: Contribution to journalArticle

12 Scopus citations

Synthetic data via quantile regression for heavy-tailed and heteroskedastic data

Pistner, M., Slavković, A. & Vilhuber, L., Jan 1 2018, Privacy in Statistical Databases - UNESCO Chair in Data Privacy, International Conference, PSD 2018, Proceedings. Montes, F. & Domingo-Ferrer, J. (eds.). Springer Verlag, p. 92-108 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11126 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Symmetrized approximate score rank tests for the two-sample case

Akritas, M. G. & Johnson, R. A., Dec 1 1992, In : Annals of the Institute of Statistical Mathematics. 44, 4, p. 745-753 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Sure independence screening and compressed random sensing

Xue, L. & Zou, H., Jun 1 2011, In : Biometrika. 98, 2, p. 371-380 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Sure explained variability and independence screening

Chen, M., Lian, Y., Chen, Z. & Zhang, Z., Oct 2 2017, In : Journal of Nonparametric Statistics. 29, 4, p. 849-883 35 p.

Research output: Contribution to journalArticle

Suppression of proinflammatory and prosurvival biomarkers in oral cancer patients consuming a black raspberry phytochemical-rich troche

Knobloch, T. J., Uhrig, L. K., Pearl, D. K., Casto, B. C., Warner, B. M., Clinton, S. K., Sardo-Molmenti, C. L., Ferguson, J. M., Daly, B. T., Riedl, K., Schwartz, S. J., Vodovotz, Y., Buchta, A. J., Schuller, D. E., Ozer, E., Agrawal, A. & Weghorst, C. M., Feb 2016, In : Cancer Prevention Research. 9, 2, p. 159-171 13 p.

Research output: Contribution to journalArticle

27 Scopus citations

Support vector machines categorize the scaling of human grip configurations

Cesari, P., Chiaromonte, F. & Newell, K. M., Jan 1 2007, In : Behavior research methods. 39, 4, p. 1001-1007 7 p.

Research output: Contribution to journalArticle

3 Scopus citations

Supporting content and process common ground in computer-supported teamwork

Convertino, G., Mentis, H. M., Rosson, M. B., Slavkovic, A. & Carroll, J. M., Dec 1 2009, CHI 2009: Digital Life New World - Proceedings of the 27th International Conference on Human Factors in Computing Systems. p. 2339-2348 10 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

36 Scopus citations
38 Scopus citations

Supersaturated designs with high searching probability

Chatterjee, K., Sarkar, A. & Lin, D. K. J., Jan 1 2008, In : Journal of Statistical Planning and Inference. 138, 1, p. 272-277 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

Supersaturated design including an orthogonal base

Yamada, S. & Lin, D. K. J., Jun 1997, In : Canadian Journal of Statistics. 25, 2, p. 203-213 11 p.

Research output: Contribution to journalArticle

54 Scopus citations

Sufficient forecasting using factor models

Fan, J., Xue, L. & Yao, J., Dec 2017, In : Journal of Econometrics. 201, 2, p. 292-306 15 p.

Research output: Contribution to journalArticle

5 Scopus citations

Sufficient direction factor model and its application to gene expression quantitative trait loci discovery

Jiang, F., Ma, Y. & Wei, Y., Jan 1 2019, In : Biometrika. 106, 2, p. 417-432 16 p., asz010.

Research output: Contribution to journalArticle

1 Scopus citations

Sufficient dimension reduction in regressions with categorical predictors

Chiaromonte, F., Cook, R. D. & Li, B., Apr 1 2002, In : Annals of Statistics. 30, 2, p. 475-497 23 p.

Research output: Contribution to journalArticle

97 Scopus citations

Sufficient dimension reduction based on an ensemble of minimum average variance estimators

Yin, X. & Li, B., Dec 2011, In : Annals of Statistics. 39, 6, p. 3392-3416 25 p.

Research output: Contribution to journalArticle

33 Scopus citations

Sufficient dimension reduction and graphics in regression

Chiaromonte, F. & Cook, R. D., Dec 1 2002, In : Annals of the Institute of Statistical Mathematics. 54, 4, p. 768-795 28 p.

Research output: Contribution to journalReview article

23 Scopus citations

Successive direction extraction for estimating the central subspace in a multiple-index regression

Yin, X., Li, B. & Cook, R. D., Sep 1 2008, In : Journal of Multivariate Analysis. 99, 8, p. 1733-1757 25 p.

Research output: Contribution to journalArticle

92 Scopus citations

Successful computational prediction of novel imprinted genes from epigenomic features

Brideau, C. M., Eilertson, K. E., Hagarman, J. A., Bustamante, C. D. & Soloway, P. D., Jul 1 2010, In : Molecular and cellular biology. 30, 13, p. 3357-3370 14 p.

Research output: Contribution to journalArticle

35 Scopus citations

Subsample and half-sample methods

Babu, G. J., Dec 1992, In : Annals of the Institute of Statistical Mathematics. 44, 4, p. 703-720 18 p.

Research output: Contribution to journalArticle

6 Scopus citations

Study of non-linear frequency warping functions for speaker normalization

Sriperumbudur, B. K., Umesh, S. & Sinha, R., Dec 1 2006, 2006 IEEE International Conference on Acoustics, Speech, and Signal Processing - Proceedings. 1660253. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Study of MEMS-based inertial sensors operating in dynamic conditions

Stebler, Y., Guerrier, S., Skaloud, J., Molinari, R. & Victoria-Feser, M. P., Jan 1 2014, Proceedings of the 2014 IEEE/ION Position, Location and Navigation Symposium, PLANS 2014. Institute of Electrical and Electronics Engineers Inc., p. 1227-1231 5 p. 6851497. (Record - IEEE PLANS, Position Location and Navigation Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Studying digital imagery of ancient paintings by mixtures of stochastic models

Li, J. & Wang, J. Z., Mar 1 2004, In : IEEE Transactions on Image Processing. 13, 3, p. 340-353 14 p.

Research output: Contribution to journalArticle

122 Scopus citations

Studying aesthetics in photographic images using a computational approach

Datta, R., Joshi, D., Li, J. & Wang, J. Z., Jul 17 2006, Computer Vision - ECCV 2006, 9th European Conference on Computer Vision, Proceedings. p. 288-301 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3953 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

546 Scopus citations

Study design for sequencing studies

Honaas, L. A., Altman, N. S. & Krzywinski, M., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 39-66 28 p. (Methods in Molecular Biology; vol. 1418).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Strong representations for LAD estimators in linear models

Babu, G. J., Dec 1 1989, In : Probability Theory and Related Fields. 83, 4, p. 547-558 12 p.

Research output: Contribution to journalArticle

42 Scopus citations

Strong oracle optimality of folded concave penalized estimation

Fan, J., Xue, L. & Zou, H., Jun 2014, In : Annals of Statistics. 42, 3, p. 819-849 31 p.

Research output: Contribution to journalArticle

104 Scopus citations

Strong lens time delay challenge. II. Results of TDC1

Liao, K., Treu, T., Marshall, P., Fassnacht, C. D., Rumbaugh, N., Dobler, G., Aghamousa, A., Bonvin, V., Courbin, F., Hojjati, A., Jackson, N., Kashyap, V., Rathna Kumar, S., Linder, E., Mandel, K., Meng, X. L., Meylan, G., Moustakas, L. A., Prabhu, T. P., Romero-Wolf, A. & 6 others, Shafieloo, A., Siemiginowska, A., Stalin, C. S., Tak, H., Tewes, M. & Van Dyk, D., Feb 10 2015, In : Astrophysical Journal Letters. 800, 1, L11.

Research output: Contribution to journalArticle

Open Access
61 Scopus citations

Strong and weak male mutation bias at different sites in the primate genomes: Insights from the human-chimpanzee comparison

Taylor, J., Tyekucheva, S., Zody, M., Chiaromonte, F. & Makova, K. D., Mar 1 2006, In : Molecular biology and evolution. 23, 3, p. 565-573 9 p.

Research output: Contribution to journalArticle

67 Scopus citations

Stochastic Population Models

Fricks, J. & Hanks, E., 2018, Handbook of Statistics. Srinivasa Rao, A. S. R. & Rao, C. R. (eds.). Elsevier B.V., p. 443-480 38 p. (Handbook of Statistics; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

Stochastic modeling of volume images with a 3-D hidden Markov model

Li, J., Joshi, D. & Wang, J., Dec 1 2004, 2004 International Conference on Image Processing, ICIP 2004. p. 2359-2362 4 p. (Proceedings - International Conference on Image Processing, ICIP; vol. 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Stochastic lead time with order crossover

Yang, C. C. & Lin, D. K. J., Sep 3 2019, In : Quality Technology and Quantitative Management. 16, 5, p. 575-587 13 p.

Research output: Contribution to journalArticle

Stochastic generalized method of moments

Yin, G., Ma, Y., Liang, F. & Yuan, Y., Oct 5 2011, In : Journal of Computational and Graphical Statistics. 20, 3, p. 714-727 14 p.

Research output: Contribution to journalArticle

5 Scopus citations

Stochastic dominance and omega ratio: Measures to examine market efficiency, arbitrage opportunity, and anomaly

Guo, X., Jiang, X. & Wong, W. K., Oct 19 2017, In : Economies. 5, 4, 38.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Stochastic compositional gradient descent: algorithms for minimizing compositions of expected-value functions

Wang, M., Fang, E. X. & Liu, H., Jan 1 2017, In : Mathematical Programming. 161, 1-2, p. 419-449 31 p.

Research output: Contribution to journalArticle

25 Scopus citations

Stilt: Easy emulation of time series AR(1) computer model output in multidimensional parameter space

Olson, R., Ruckert, K. L., Chang, W., Keller, K., Haran, M. & An, S. I., Jan 1 2019, In : R Journal. 10, 2, p. 209-225 17 p.

Research output: Contribution to journalArticle

Open Access

Stephen elliott fienberg 1942-2016, founding editor of the annual review of statistics and its application

Carriquiry, A. L., Reid, N. & Slavković, A. B., Mar 7 2019, In : Annual Review of Statistics and Its Application. 6, p. 1-18 18 p.

Research output: Contribution to journalReview article

Open Access

"Stealth dissemination" of macrophage-tumor cell fusions cultured from blood of patients with pancreatic ductal adenocarcinoma

Clawson, G. A., Matters, G. L., Xin, P., McGovern, C., Wafula, E., DePamphilis, C., Meckley, M., Wong, J., Stewart, L., D’Jamoos, C., Altman, N., Kawasawa, Y. I., Du, Z., Honaas, L. & Abraham, T., Sep 2017, In : PloS one. 12, 9, e0184451.

Research output: Contribution to journalArticle

7 Scopus citations